prot_M-pyrifera_M_contig111352.2366.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig111352.2366.1
Unique Nameprot_M-pyrifera_M_contig111352.2366.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length176
Homology
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BLAST of mRNA_M-pyrifera_M_contig111352.2366.1 vs. uniprot
Match: A0A5A8DEP8_CAFRO (USP domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DEP8_CAFRO)

HSP 1 Score: 109 bits (273), Expect = 1.480e-24
Identity = 61/175 (34.86%), Postives = 85/175 (48.57%), Query Frame = 0 
Query:    1 PSRIVIRLHAEAPLWELRAGFAAKLGVDATRVRLAFGGKTLGDEDSGKTLAEANIRDGVTVNASYAPAPRKWRFPLAQDDKAELRNARLTAPAERALMLVFSRFCNEDGLMSKSDIRSYFRACGITDARNLGDERLRQIFSGVNTTPDGAMTPYGFSQFYAHAALQRVEKAYDDF 175
            P++  +RL   A + E+R   A  LG      RLA  GK    E + ++L +  I+   TV  S           LA    ++ R+A+LT  AE+ +M +F RFCNEDGLM     R + R  G++D +NL D RL ++F      P G +   GF QFY  AA  R      DF
Sbjct: 1257 PAKFRLRLPGAATVSEMRGVLAEFLGFSPAVFRLAVAGKVWSPEQNSRSLTQMGIKTADTVLLSLKIQRETTAPLLANPSVSDQRSAKLTPAAEKVVMHIFHRFCNEDGLMGIPHFRDFCRGAGVSDEQNLSDSRLGEVFRNAELDPSGMLALKGFIQFYTEAAFTRPGNVLSDF 1431
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111352.2366.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8DEP8_CAFRO1.480e-2434.86USP domain-containing protein n=5 Tax=Cafeteria ro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 3..62
e-value: 4.5E-6
score: 28.4
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..61
score: 10.615
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 4..62
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 89..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111352contigM-pyrifera_M_contig111352:14..541 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111352.2366.1mRNA_M-pyrifera_M_contig111352.2366.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig111352 14..541 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig111352.2366.1 ID=prot_M-pyrifera_M_contig111352.2366.1|Name=mRNA_M-pyrifera_M_contig111352.2366.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
PSRIVIRLHAEAPLWELRAGFAAKLGVDATRVRLAFGGKTLGDEDSGKTL
AEANIRDGVTVNASYAPAPRKWRFPLAQDDKAELRNARLTAPAERALMLV
FSRFCNEDGLMSKSDIRSYFRACGITDARNLGDERLRQIFSGVNTTPDGA
MTPYGFSQFYAHAALQRVEKAYDDFV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-like_domsf
IPR011992EF-hand-dom_pair