mRNA_M-pyrifera_M_contig101110.236.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig101110.236.1
Unique Name	mRNA_M-pyrifera_M_contig101110.236.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot
Match: A0A218X821_PUNGR (Ribulose bisphosphate carboxylase large chain n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218X821_PUNGR)

HSP 1 Score: 208 bits (530), Expect = 6.180e-67
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 1

Query:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRYYHIEPVAGEESQF 312
            MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTP+YETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGR YHIEPVAGEE+Q+
Sbjct:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEENQY 104

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BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot
Match: A0A251N629_PRUPE (Ribulose bisphosphate carboxylase large chain n=1 Tax=Prunus persica TaxID=3760 RepID=A0A251N629_PRUPE)

HSP 1 Score: 206 bits (524), Expect = 2.480e-66
Identity = 98/104 (94.23%), Postives = 103/104 (99.04%), Query Frame = 1

Query:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRYYHIEPVAGEESQF 312
            MSCREGLMSPQTET+AS+GFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWT+GL++LDRYKGR YHIEPVAGEESQF
Sbjct:    1 MSCREGLMSPQTETEASIGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTEGLSNLDRYKGRCYHIEPVAGEESQF 104

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BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot
Match: A0A6D2JYW9_9BRAS (Ribulose bisphosphate carboxylase large chain n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JYW9_9BRAS)

HSP 1 Score: 205 bits (521), Expect = 4.960e-66
Identity = 98/104 (94.23%), Postives = 102/104 (98.08%), Query Frame = 1

Query:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRYYHIEPVAGEESQF 312
            M+CREGLMSPQTETKASVGFKAGVK+YKLTYYTP+YETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGR YHIEPV GEE+QF
Sbjct:    1 MTCREGLMSPQTETKASVGFKAGVKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGEETQF 104

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BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot
Match: A0A1R3L168_9ROSI (Ribulose bisphosphate carboxylase large chain n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3L168_9ROSI)

HSP 1 Score: 203 bits (517), Expect = 2.150e-65
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 1

Query:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRYYHIEPVAGEESQF 312
            MSCREGLMSPQTETKASVGFKAGVK+YKLTYYTP+Y+ KDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGR YHIEPVAGEE Q+
Sbjct:    1 MSCREGLMSPQTETKASVGFKAGVKEYKLTYYTPEYQVKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEEDQY 104

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BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot
Match: A0A0S2GIT6_9LAMI (Ribulose bisphosphate carboxylase large chain (Fragment) n=3 Tax=Salvia incertae sedis TaxID=2291027 RepID=A0A0S2GIT6_9LAMI)

HSP 1 Score: 200 bits (509), Expect = 5.250e-65
Identity = 95/104 (91.35%), Postives = 100/104 (96.15%), Query Frame = 1

Query:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRYYHIEPVAGEESQF 312
            MSCREG MSPQTETKASVGFKAGVK+YKLTYYTP+YETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLT+LDRYKGR YHIEPV GE+ Q+
Sbjct:    1 MSCREGFMSPQTETKASVGFKAGVKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTNLDRYKGRCYHIEPVPGEKDQY 104

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BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot
Match: UPI00090153A4 (uncharacterized protein LOC109132455 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090153A4)

HSP 1 Score: 205 bits (521), Expect = 9.230e-65
Identity = 98/104 (94.23%), Postives = 102/104 (98.08%), Query Frame = 1

Query:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRYYHIEPVAGEESQF 312
            M+CREGLMSPQTETKASVGFKAGVK+YKLTYYTP+YETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGR YHIEPV GEE+QF
Sbjct:    1 MTCREGLMSPQTETKASVGFKAGVKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGEETQF 104

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BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot
Match: A0A6G9J8K8_9ASPA (Ribulose bisphosphate carboxylase large chain (Fragment) n=5 Tax=Petrosaviidae TaxID=1437197 RepID=A0A6G9J8K8_9ASPA)

HSP 1 Score: 204 bits (518), Expect = 1.010e-64
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 1

Query:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRYYHIEPVAGEESQF 312
            MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGR YHIE V GE++Q+
Sbjct:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEVVVGEDNQY 104

[Close]

BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot
Match: A0A1R3K0P8_9ROSI (Ribulose bisphosphate carboxylase large chain n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3K0P8_9ROSI)

HSP 1 Score: 200 bits (509), Expect = 1.390e-64
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 1

Query:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRYYHIEPVAGEESQF 312
            MSCREGLMSPQTETKASVGFKAGVK+YKLTYYT +Y+ KDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGR YHIEPVAGEE Q+
Sbjct:    1 MSCREGLMSPQTETKASVGFKAGVKEYKLTYYTSEYQVKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEEDQY 104

[Close]

BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot
Match: A0A6G9J8M7_9ASPA (Ribulose bisphosphate carboxylase large chain (Fragment) n=3 Tax=Petrosaviidae TaxID=1437197 RepID=A0A6G9J8M7_9ASPA)

HSP 1 Score: 202 bits (515), Expect = 2.880e-64
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 1

Query:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRYYHIEPVAGEESQF 312
            MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTP YETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGR YHIE V GEE+Q+
Sbjct:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPHYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEAVVGEENQY 104

[Close]

BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot
Match: A0A6G9J756_9ASPA (Ribulose bisphosphate carboxylase large chain (Fragment) n=14 Tax=Epidendroideae TaxID=158332 RepID=A0A6G9J756_9ASPA)

HSP 1 Score: 202 bits (515), Expect = 2.880e-64
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 1

Query:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRYYHIEPVAGEESQF 312
            MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTP YETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGR YHIE V GEE+Q+
Sbjct:    1 MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPHYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEAVVGEENQY 104

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig101110.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A218X821_PUNGR	6.180e-67	96.15	Ribulose bisphosphate carboxylase large chain n=1 ...	[more]
A0A251N629_PRUPE	2.480e-66	94.23	Ribulose bisphosphate carboxylase large chain n=1 ...	[more]
A0A6D2JYW9_9BRAS	4.960e-66	94.23	Ribulose bisphosphate carboxylase large chain n=1 ...	[more]
A0A1R3L168_9ROSI	2.150e-65	93.27	Ribulose bisphosphate carboxylase large chain n=1 ...	[more]
A0A0S2GIT6_9LAMI	5.250e-65	91.35	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
UPI00090153A4	9.230e-65	94.23	uncharacterized protein LOC109132455 n=1 Tax=Camel...	[more]
A0A6G9J8K8_9ASPA	1.010e-64	94.23	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
A0A1R3K0P8_9ROSI	1.390e-64	92.31	Ribulose bisphosphate carboxylase large chain n=1 ...	[more]
A0A6G9J8M7_9ASPA	2.880e-64	94.23	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
A0A6G9J756_9ASPA	2.880e-64	94.23	Ribulose bisphosphate carboxylase large chain (Fra...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig101110	contig	M-pyrifera_M_contig101110:362..673 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	207.6
Seed ortholog evalue	2.8e-51
Seed eggNOG ortholog	102107.XP_008245779.1
Preferred name	rbcL
KEGG rclass	RC00172,RC00859
KEGG ko	ko:K01601
KEGG Reaction	R00024,R03140
KEGG Pathway	ko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200
KEGG Module	M00165,M00166,M00532
Hectar predicted targeting category	other localisation
GOs	GO:0000312,GO:0000313,GO:0000314,GO:0001101,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009547,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009737,GO:0009941,GO:0010033,GO:0010035,GO:0010038,GO:0010287,GO:0015935,GO:0016020,GO:0022626,GO:0030312,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033993,GO:0034357,GO:0042221,GO:0042651,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0055035,GO:0071944,GO:0097305,GO:1901700,GO:1990904
EggNOG free text desc.	Ribulose bisphosphate carboxylase, large chain
EggNOG OGs	2QTI9@2759,37HQX@33090,3GDC3@35493,4JS2T@91835,COG1850@1
EC	4.1.1.39
COG Functional cat.	C
Best tax level	fabids
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Exons	1
Model size	312
Cds size	312
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815508.6759386-CDS-M-pyrifera_M_contig101110:361..673	1622815508.6759386-CDS-M-pyrifera_M_contig101110:361..673	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig101110 362..673 +
1692277443.3115666-CDS-M-pyrifera_M_contig101110:361..673	1692277443.3115666-CDS-M-pyrifera_M_contig101110:361..673	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig101110 362..673 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig101110.236.1	prot_M-pyrifera_M_contig101110.236.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig101110 362..673 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig101110:362..673+
coding sequence from alignment at M-pyrifera_M_contig101110:362..673+

protein sequence of mRNA_M-pyrifera_M_contig101110.236.1

>prot_M-pyrifera_M_contig101110.236.1 ID=prot_M-pyrifera_M_contig101110.236.1|Name=mRNA_M-pyrifera_M_contig101110.236.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVT
PQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRYYHIEPVAGE
ESQF

mRNA from alignment at M-pyrifera_M_contig101110:362..673+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig101110.236.1 ID=mRNA_M-pyrifera_M_contig101110.236.1|Name=mRNA_M-pyrifera_M_contig101110.236.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig101110:362..673+ (Macrocystis pyrifera P11B4 male)
ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAG
TGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTC
CTGACTATGAAACCAAAGATACTGATATCTTGGCAGCATTTCGAGTAACT
CCTCAACCTGGAGTTCCACCTGAAGAAGCAGGGGCAGCGGTAGCTGCTGA
ATCTTCTACTGGTACATGGACAACTGTATGGACTGACGGGCTTACTAGTC
TTGATCGTTACAAAGGTCGATACTACCACATCGAGCCCGTTGCTGGAGAA
GAAAGTCAATTT

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101110:362..673+

>mRNA_M-pyrifera_M_contig101110.236.1 ID=mRNA_M-pyrifera_M_contig101110.236.1|Name=mRNA_M-pyrifera_M_contig101110.236.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig101110:362..673+ (Macrocystis pyrifera P11B4 male)
ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAG
TGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTC
CTGACTATGAAACCAAAGATACTGATATCTTGGCAGCATTTCGAGTAACT
CCTCAACCTGGAGTTCCACCTGAAGAAGCAGGGGCAGCGGTAGCTGCTGA
ATCTTCTACTGGTACATGGACAACTGTATGGACTGACGGGCTTACTAGTC
TTGATCGTTACAAAGGTCGATACTACCACATCGAGCCCGTTGCTGGAGAA
GAAAGTCAATTTATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGA
GACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGA
CTTATTATACTCCTGACTATGAAACCAAAGATACTGATATCTTGGCAGCA
TTTCGAGTAACTCCTCAACCTGGAGTTCCACCTGAAGAAGCAGGGGCAGC
GGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTATGGACTGACG
GGCTTACTAGTCTTGATCGTTACAAAGGTCGATACTACCACATCGAGCCC
GTTGCTGGAGAAGAAAGTCAATTT