mRNA_M-pyrifera_M_contig111225.2347.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111225.2347.1
Unique NamemRNA_M-pyrifera_M_contig111225.2347.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111225.2347.1 vs. uniprot
Match: A0A517T9Y2_9PLAN (Cadherin domain protein n=2 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517T9Y2_9PLAN)

HSP 1 Score: 64.3 bits (155), Expect = 1.270e-9
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:   16 SGLDAHHIVPG----KVKRAEASRKLLERYQVDINDAVNGVPLVGGKGAAKDVLPRHHRGNGLHTGDTGIQQLNDRLAQAVDGVEDWATGRQRIIQELEVIAKEILDGTF 333
            SG  AHHIV      K K A   R+LL+ +Q+DINDA NGV L              HRG  LH+   G+  +  +L  AV G++DW   R +I+ EL  IA +I    F
Sbjct: 2927 SGEHAHHIVAAGIEFKDKSAVKGRQLLDFFQIDINDAGNGVRLT----------KEQHRG-ALHS-KKGVALVYSKLTAAVKGIDDWDVARSKILDELADIADDIKSEEF 3024
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BLAST of mRNA_M-pyrifera_M_contig111225.2347.1 vs. uniprot
Match: A0A1C4DRA6_9GAMM (RHS repeat-associated core domain-containing protein (Fragment) n=5 Tax=Gilliamella TaxID=1193503 RepID=A0A1C4DRA6_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 1.260e-7
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:   28 AHHIVPGKVKRAEASRKLLERYQVDINDAVNGVPLVGGKGAAKDVLPRHHRGNGLHTGDTGIQQLNDRLAQAVDGVEDWATGRQRIIQELEVIA 309
            AHHIV    KRAE +RK+LE+Y +DIN A+NGV L   K  +K     H   NG H  D  I ++N RL  A     D    ++ I  EL+ IA
Sbjct:   54 AHHIVAESAKRAEPARKILEKYGIDINGAMNGVFLPTNKNTSKLPGIMH---NGRHPNDY-INEVNKRLRNA-----DKIGTKEAIEAELKNIA 138
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BLAST of mRNA_M-pyrifera_M_contig111225.2347.1 vs. uniprot
Match: UPI001F22DD48 (polymorphic toxin-type HINT domain-containing protein n=1 Tax=Nonomuraea antri TaxID=2730852 RepID=UPI001F22DD48)

HSP 1 Score: 57.8 bits (138), Expect = 2.250e-7
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   13 GSGLDAHHIVPGKVKRAEASRKLLERYQVDINDAVNGVPLVGG--KGAAKDVLPRHHRGNGLHTGDTGIQQLNDRLAQAVDGVEDWATGRQRIIQELEVIAKEILDG 327
            G G  AHHIV GK  RA  +RK L+++ +DINDAVNGV L GG  K      +P H R   +HT +T    +ND L+ A          R   I+ L  + +E+ DG
Sbjct:  396 GPGEAAHHIVAGKDLRAAPARKALDKFGIDINDAVNGVWLPGGSKKPNPGGSIP-HSR---VHT-NTYYDSVNDALSMA--------RSRSEAIEILAQLRRELRDG 489
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BLAST of mRNA_M-pyrifera_M_contig111225.2347.1 vs. uniprot
Match: A0A844X0D7_9GAMM (Uncharacterized protein n=1 Tax=Gilliamella sp. Pas-s25 TaxID=2687310 RepID=A0A844X0D7_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 6.150e-6
Identity = 38/94 (40.43%), Postives = 49/94 (52.13%), Query Frame = 1 
Query:   28 AHHIVPGKVKRAEASRKLLERYQVDINDAVNGVPLVGGKGAAKDVLPRHHRGNGLHTGDTGIQQLNDRLAQAVDGVEDWATGRQRIIQELEVIA 309
            AHHIV    K AE +RK+LE+Y +DIN A+NGV L   K  +      H   NG H  +  I  +NDRL  A     D    ++ I  EL+ IA
Sbjct:   25 AHHIVAEGAKNAEPARKILEKYGIDINGAMNGVFLPTNKNTSNLPGIMH---NGRHP-NAYIDAVNDRLKMA-----DKIGTKEAIEAELKNIA 109
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BLAST of mRNA_M-pyrifera_M_contig111225.2347.1 vs. uniprot
Match: UPI00201F3C51 (DUF6531 domain-containing protein n=1 Tax=Flavobacterium sp. B183 TaxID=907046 RepID=UPI00201F3C51)

HSP 1 Score: 52.4 bits (124), Expect = 1.890e-5
Identity = 36/107 (33.64%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   19 GLDAHHIVPGKVKRAEASRKLLERYQVDINDAVNGVPLVGGKGAAKDVLPR------HHRGNGLHTGDTGIQQLNDRLAQAVDGVEDWATGRQRIIQELEVIAKEIL 321
            G  AHH+V G   RA+ +R++LE++Q+DIN A NG+ L       K + P       +HR   +HT D   + +N R+  A     D   G+Q ++ EL  I+ ++L
Sbjct: 1303 GSAAHHMVAGDDVRADPARRILEKHQIDINSAENGIYL-------KHIDPNSIQPGAYHRV--IHT-DKYYENINQRIIDA-----DALGGKQGVLDELNSISDDLL 1394
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BLAST of mRNA_M-pyrifera_M_contig111225.2347.1 vs. uniprot
Match: A0A2S6WDS0_9ACTN (DUF6531 domain-containing protein n=1 Tax=Streptomyces sp. 46 TaxID=1777322 RepID=A0A2S6WDS0_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 2.590e-5
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 GIAEGSGLDAHHIVPGKVKRAEA--SRKLLERYQVDINDAVNGVPL 132
            G  +G G  A HIVP  +KR  A  SR LLERY VDINDAVNG+PL
Sbjct: 1385 GRGKGVGEAAAHIVPSGMKRNRAAESRALLERYGVDINDAVNGIPL 1430
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111225.2347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A517T9Y2_9PLAN1.270e-939.09Cadherin domain protein n=2 Tax=Calycomorphotria h... [more]
A0A1C4DRA6_9GAMM1.260e-742.55RHS repeat-associated core domain-containing prote... [more]
UPI001F22DD482.250e-740.19polymorphic toxin-type HINT domain-containing prot... [more]
A0A844X0D7_9GAMM6.150e-640.43Uncharacterized protein n=1 Tax=Gilliamella sp. Pa... [more]
UPI00201F3C511.890e-533.64DUF6531 domain-containing protein n=1 Tax=Flavobac... [more]
A0A2S6WDS0_9ACTN2.590e-563.04DUF6531 domain-containing protein n=1 Tax=Streptom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111225contigM-pyrifera_M_contig111225:190..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.3542178-CDS-M-pyrifera_M_contig111225:189..5311622815624.3542178-CDS-M-pyrifera_M_contig111225:189..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111225 190..531 -
1692277493.0308518-CDS-M-pyrifera_M_contig111225:189..5311692277493.0308518-CDS-M-pyrifera_M_contig111225:189..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111225 190..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111225.2347.1prot_M-pyrifera_M_contig111225.2347.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111225 190..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111225.2347.1

>prot_M-pyrifera_M_contig111225.2347.1 ID=prot_M-pyrifera_M_contig111225.2347.1|Name=mRNA_M-pyrifera_M_contig111225.2347.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
GIAEGSGLDAHHIVPGKVKRAEASRKLLERYQVDINDAVNGVPLVGGKGA
AKDVLPRHHRGNGLHTGDTGIQQLNDRLAQAVDGVEDWATGRQRIIQELE
VIAKEILDGTFPH*
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mRNA from alignment at M-pyrifera_M_contig111225:190..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111225.2347.1 ID=mRNA_M-pyrifera_M_contig111225.2347.1|Name=mRNA_M-pyrifera_M_contig111225.2347.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig111225:190..531- (Macrocystis pyrifera P11B4 male)
GGAATTGCGGAAGGCTCTGGACTGGATGCACATCACATTGTACCGGGAAA
AGTTAAACGGGCAGAGGCGTCCAGAAAACTGTTGGAACGCTACCAAGTCG
ACATCAATGATGCAGTGAATGGTGTCCCGCTCGTGGGCGGAAAGGGTGCC
GCAAAAGATGTCTTACCTAGGCATCATCGTGGTAATGGACTACATACGGG
CGACACAGGTATCCAACAGCTCAACGATCGATTGGCTCAAGCAGTAGATG
GAGTGGAGGATTGGGCAACTGGCCGCCAAAGAATCATCCAAGAATTGGAA
GTTATTGCCAAAGAGATTCTCGATGGCACATTTCCACATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111225:190..531-

>mRNA_M-pyrifera_M_contig111225.2347.1 ID=mRNA_M-pyrifera_M_contig111225.2347.1|Name=mRNA_M-pyrifera_M_contig111225.2347.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig111225:190..531- (Macrocystis pyrifera P11B4 male)
GGAATTGCGGAAGGCTCTGGACTGGATGCACATCACATTGTACCGGGAAA
AGTTAAACGGGCAGAGGCGTCCAGAAAACTGTTGGAACGCTACCAAGTCG
ACATCAATGATGCAGTGAATGGTGTCCCGCTCGTGGGCGGAAAGGGTGCC
GCAAAAGATGTCTTACCTAGGCATCATCGTGGTAATGGACTACATACGGG
CGACACAGGTATCCAACAGCTCAACGATCGATTGGCTCAAGCAGTAGATG
GAGTGGAGGATTGGGCAACTGGCCGCCAAAGAATCATCCAAGAATTGGAA
GTTATTGCCAAAGAGATTCTCGATGGCACATTTCCACATTGAGGAATTGC
GGAAGGCTCTGGACTGGATGCACATCACATTGTACCGGGAAAAGTTAAAC
GGGCAGAGGCGTCCAGAAAACTGTTGGAACGCTACCAAGTCGACATCAAT
GATGCAGTGAATGGTGTCCCGCTCGTGGGCGGAAAGGGTGCCGCAAAAGA
TGTCTTACCTAGGCATCATCGTGGTAATGGACTACATACGGGCGACACAG
GTATCCAACAGCTCAACGATCGATTGGCTCAAGCAGTAGATGGAGTGGAG
GATTGGGCAACTGGCCGCCAAAGAATCATCCAAGAATTGGAAGTTATTGC
CAAAGAGATTCTCGATGGCACATTTCCACATTGA
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