prot_M-pyrifera_M_contig111223.2346.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig111223.2346.1
Unique Nameprot_M-pyrifera_M_contig111223.2346.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length54
Homology
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A5A8CXW1_CAFRO (AP complex subunit sigma n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CXW1_CAFRO)

HSP 1 Score: 77.8 bits (190), Expect = 7.000e-17
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0
Query:    2 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 53
            IRFFLLQNR GKTRLSKWYV  EE EKRK+E E FKL++ RD KFTNFVE +
Sbjct:    2 IRFFLLQNRAGKTRLSKWYVTVEEPEKRKIETEVFKLISARDGKFTNFVEFK 53          
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A813AR36_9DINO (AP complex subunit sigma (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AR36_9DINO)

HSP 1 Score: 76.6 bits (187), Expect = 1.810e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0
Query:    2 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVRN 54
            IRFFLLQNRQGKTRLSKWYV  EE EKRK+E E  +++T RD K+TNFVE +N
Sbjct:    1 IRFFLLQNRQGKTRLSKWYVDVEEAEKRKIEGEVHRMITMRDGKYTNFVEFQN 53          
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A7S0TMX3_HEMAN (AP complex subunit sigma n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0TMX3_HEMAN)

HSP 1 Score: 76.3 bits (186), Expect = 3.860e-16
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0
Query:    2 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVRN 54
            IRF LLQNRQGKTRLSKWYVP E+ EK+ +++E  K+VT+R++KFTNFVE RN
Sbjct:   19 IRFLLLQNRQGKTRLSKWYVPYEDSEKQSIQVECHKIVTQREAKFTNFVEWRN 71          
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: L1JN93_GUITC (AP complex subunit sigma n=3 Tax=Geminigeraceae TaxID=589343 RepID=L1JN93_GUITC)

HSP 1 Score: 74.3 bits (181), Expect = 1.480e-15
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 0
Query:    2 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 53
            IRF LLQNRQGKTRLSKWYVP ++ EK+ ++LE  K+VT+R+SKFTNFVE R
Sbjct:    2 IRFLLLQNRQGKTRLSKWYVPYDDTEKQSIQLECHKVVTQRESKFTNFVEWR 53          
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A817BF67_BRANA (AP complex subunit sigma n=2 Tax=Brassica TaxID=3705 RepID=A0A817BF67_BRANA)

HSP 1 Score: 74.7 bits (182), Expect = 1.640e-15
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0
Query:    1 QIRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 53
            QIRF LLQNRQGKTRL+K+YVP EE EK KVE E  +LV  RD+KFTNFVE R
Sbjct:   24 QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFR 76          
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A0D3CNZ5_BRAOL (AP complex subunit sigma n=3 Tax=Brassica TaxID=3705 RepID=A0A0D3CNZ5_BRAOL)

HSP 1 Score: 74.7 bits (182), Expect = 1.680e-15
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0
Query:    1 QIRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 53
            QIRF LLQNRQGKTRL+K+YVP EE EK KVE E  +LV  RD+KFTNFVE R
Sbjct:   25 QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFR 77          
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A2G9HCV7_9LAMI (Clat_adaptor_s domain-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HCV7_9LAMI)

HSP 1 Score: 71.6 bits (174), Expect = 2.480e-15
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0
Query:    2 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEV 52
            IRF LLQNRQGKTRL+K+Y+P EE EK KVE E  +LV  RD KFTNFVEV
Sbjct:    2 IRFILLQNRQGKTRLAKYYIPLEESEKHKVEYEVHRLVVNRDPKFTNFVEV 52          
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A5A7V4V8_CUCME (AP-2 complex subunit sigma n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7V4V8_CUCME)

HSP 1 Score: 72.8 bits (177), Expect = 3.450e-15
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    2 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 53
            IRF LLQNRQGKTRL+K+YVP EE EK KVE E  +LV  RD KFTNFVE+R
Sbjct:   53 IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVELR 104          
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A835F7V8_9POAL (AP complex subunit sigma n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835F7V8_9POAL)

HSP 1 Score: 73.2 bits (178), Expect = 3.660e-15
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 0
Query:    1 QIRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 53
            QIRF LLQNRQGKTRL+K+YVP E+ EK KVE E  +LV  RD KFTNFVE R
Sbjct:    2 QIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEFEVHRLVVNRDPKFTNFVEFR 54          
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A2I0AFK9_9ASPA (AP complex subunit sigma n=2 Tax=Orchidaceae TaxID=4747 RepID=A0A2I0AFK9_9ASPA)

HSP 1 Score: 73.9 bits (180), Expect = 3.790e-15
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 0
Query:    1 QIRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 53
            QIRF LLQNRQGKTRL+K+YVP EE EK KVE E  +LV  RD KFTNFVE R
Sbjct:   31 QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFR 83          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CXW1_CAFRO7.000e-1775.00AP complex subunit sigma n=1 Tax=Cafeteria roenber... [more]
A0A813AR36_9DINO1.810e-1671.70AP complex subunit sigma (Fragment) n=1 Tax=Symbio... [more]
A0A7S0TMX3_HEMAN3.860e-1669.81AP complex subunit sigma n=3 Tax=Hemiselmis TaxID=... [more]
L1JN93_GUITC1.480e-1571.15AP complex subunit sigma n=3 Tax=Geminigeraceae Ta... [more]
A0A817BF67_BRANA1.640e-1573.58AP complex subunit sigma n=2 Tax=Brassica TaxID=37... [more]
A0A0D3CNZ5_BRAOL1.680e-1573.58AP complex subunit sigma n=3 Tax=Brassica TaxID=37... [more]
A0A2G9HCV7_9LAMI2.480e-1572.55Clat_adaptor_s domain-containing protein n=1 Tax=H... [more]
A0A5A7V4V8_CUCME3.450e-1573.08AP-2 complex subunit sigma n=1 Tax=Cucumis melo va... [more]
A0A835F7V8_9POAL3.660e-1571.70AP complex subunit sigma n=1 Tax=Digitaria exilis ... [more]
A0A2I0AFK9_9ASPA3.790e-1573.58AP complex subunit sigma n=2 Tax=Orchidaceae TaxID... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..54
e-value: 1.3E-12
score: 47.9
NoneNo IPR availableGENE3D3.30.450.60coord: 1..54
e-value: 4.5E-13
score: 51.1
NoneNo IPR availablePANTHERPTHR11753:SF44AP-2 COMPLEX SUBUNIT SIGMAcoord: 2..53
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 2..53
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 2..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111223contigM-pyrifera_M_contig111223:167..328 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111223.2346.1mRNA_M-pyrifera_M_contig111223.2346.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig111223 167..328 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig111223.2346.1 ID=prot_M-pyrifera_M_contig111223.2346.1|Name=mRNA_M-pyrifera_M_contig111223.2346.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
QIRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFV
EVRN
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR016635AP_complex_ssu
IPR011012Longin-like_dom_sf