mRNA_M-pyrifera_M_contig111197.2335.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111197.2335.1
Unique NamemRNA_M-pyrifera_M_contig111197.2335.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111197.2335.1 vs. uniprot
Match: A0A059LEK3_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LEK3_9CHLO)

HSP 1 Score: 167 bits (423), Expect = 9.570e-51
Identity = 76/94 (80.85%), Postives = 87/94 (92.55%), Query Frame = 1 
Query:    1 STRHLDFALQVEKYTLKKAANLVLNVDGCIGALFLDLMESCAAFSREEMDEIVKIGYLNGLFVLGRSIGLIGHALDQKRLNQPLYRHPWDDVMY 282
            ST+HLDFA++VE YTL+KAANLVLNVDGCIGALFLDL+ SC  FSREE+D++VKIGYLNGLFVL R+IGLIGH LDQKRL QPLYRHPW+DV+Y
Sbjct:  109 STKHLDFAVRVESYTLQKAANLVLNVDGCIGALFLDLLSSCKLFSREEIDDVVKIGYLNGLFVLARTIGLIGHCLDQKRLGQPLYRHPWEDVLY 202
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BLAST of mRNA_M-pyrifera_M_contig111197.2335.1 vs. uniprot
Match: A0A7S4MH33_9EUKA (ATP citrate synthase n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MH33_9EUKA)

HSP 1 Score: 176 bits (445), Expect = 4.430e-50
Identity = 81/94 (86.17%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:    1 STRHLDFALQVEKYTLKKAANLVLNVDGCIGALFLDLMESCAAFSREEMDEIVKIGYLNGLFVLGRSIGLIGHALDQKRLNQPLYRHPWDDVMY 282
            ST+HL+FAL+VEK TL+KA+NLVLNVDGCIGALFLDLMESCAAFS +EMD+IVK+GYLN LFVLGR++GLIGHALDQKRLNQPLYRHPWDDVMY
Sbjct:  526 STKHLNFALEVEKCTLQKASNLVLNVDGCIGALFLDLMESCAAFSEQEMDDIVKVGYLNSLFVLGRTVGLIGHALDQKRLNQPLYRHPWDDVMY 619
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BLAST of mRNA_M-pyrifera_M_contig111197.2335.1 vs. uniprot
Match: A0A7S4P9V1_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4P9V1_9EUKA)

HSP 1 Score: 167 bits (423), Expect = 5.600e-49
Identity = 78/95 (82.11%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:    1 STRHLDFALQVEKYTLKKAANLVLNVDGCIGALFLDLMESCAAFSREEMDEIVKIGYLNGLFVLGRSIGLIGHALDQKRLNQPLYRHPWDDVMYM 285
            S RHLDFAL+VEK T+ KAANLVLNVDGCI ALFLDLMESCAAF+ +E +EIV+IGYLNGLF L R+IGL+GHALDQKRL QPLYRHPWDDVMYM
Sbjct:  258 SRRHLDFALEVEKITVSKAANLVLNVDGCIAALFLDLMESCAAFNEQEAEEIVEIGYLNGLFALARTIGLVGHALDQKRLKQPLYRHPWDDVMYM 352
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BLAST of mRNA_M-pyrifera_M_contig111197.2335.1 vs. uniprot
Match: A0A383VUY5_TETOB (ATP citrate synthase n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VUY5_TETOB)

HSP 1 Score: 160 bits (405), Expect = 2.360e-44
Identity = 72/93 (77.42%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    4 TRHLDFALQVEKYTLKKAANLVLNVDGCIGALFLDLMESCAAFSREEMDEIVKIGYLNGLFVLGRSIGLIGHALDQKRLNQPLYRHPWDDVMY 282
            T+HLD+A+ VE+YTL+KAANLVLNVDGCIGALFLDL+ S   FS+ EMD+I+ +GYLNGLFVL RSIGLIGHALDQKRL QPLYRHPW+DV+Y
Sbjct:  524 TKHLDYAISVEEYTLQKAANLVLNVDGCIGALFLDLLHSSGCFSQREMDDIISVGYLNGLFVLARSIGLIGHALDQKRLQQPLYRHPWEDVLY 616
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BLAST of mRNA_M-pyrifera_M_contig111197.2335.1 vs. uniprot
Match: I0YXK3_COCSC (ATP citrate synthase n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YXK3_COCSC)

HSP 1 Score: 159 bits (401), Expect = 8.080e-44
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 STRHLDFALQVEKYTLKKAANLVLNVDGCIGALFLDLMESCAAFSREEMDEIVKIGYLNGLFVLGRSIGLIGHALDQKRLNQPLYRHPWDDVMY 282
            STR+LD+AL VE+YTL KAANLVLNVDGCIGALFLDL+ S + FS+ E+ +IVKIGYLNGLFVL RSIGLIGHALDQKRL QPLYRHPWD+V+Y
Sbjct:  515 STRYLDYALTVERYTLTKAANLVLNVDGCIGALFLDLLHSSSMFSQVEIQDIVKIGYLNGLFVLARSIGLIGHALDQKRLQQPLYRHPWDEVLY 608
[Close]
BLAST of mRNA_M-pyrifera_M_contig111197.2335.1 vs. uniprot
Match: D3BQ18_POLPP (ATP citrate synthase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BQ18_POLPP)

HSP 1 Score: 157 bits (398), Expect = 2.540e-43
Identity = 68/94 (72.34%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 STRHLDFALQVEKYTLKKAANLVLNVDGCIGALFLDLMESCAAFSREEMDEIVKIGYLNGLFVLGRSIGLIGHALDQKRLNQPLYRHPWDDVMY 282
            S+++LD+AL+VEKYTL+KA NL+LNVDGCIG LFLDL+ SC  F +EE++EIV +GYLNG F++GRSIGLIGHALDQKR+ QPLYRHPW+DV+Y
Sbjct:  531 SSQYLDYALEVEKYTLQKANNLILNVDGCIGVLFLDLLHSCGLFKKEEIEEIVNVGYLNGFFIVGRSIGLIGHALDQKRMRQPLYRHPWEDVLY 624
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BLAST of mRNA_M-pyrifera_M_contig111197.2335.1 vs. uniprot
Match: A0A842SWS9_9ARCH (ATP citrate synthase n=1 Tax=Candidatus Micrarchaeota archaeon TaxID=2250274 RepID=A0A842SWS9_9ARCH)

HSP 1 Score: 157 bits (397), Expect = 3.040e-43
Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 STRHLDFALQVEKYTLKKAANLVLNVDGCIGALFLDLMESCAAFSREEMDEIVKIGYLNGLFVLGRSIGLIGHALDQKRLNQPLYRHPWDDVMY 282
            STR+LD+AL+VEKYTL+KA NL+LNVDGCIG LF+DLM S  AFS EEM  I+ IGYLNG+FVL RSIGLIGHALDQKRL QPLYRHPWDDV Y
Sbjct:  516 STRYLDYALEVEKYTLQKANNLILNVDGCIGVLFVDLMASSEAFSDEEMKSIIDIGYLNGMFVLARSIGLIGHALDQKRLKQPLYRHPWDDVKY 609
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BLAST of mRNA_M-pyrifera_M_contig111197.2335.1 vs. uniprot
Match: UPI000644A246 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A246)

HSP 1 Score: 156 bits (394), Expect = 8.890e-43
Identity = 67/94 (71.28%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 STRHLDFALQVEKYTLKKAANLVLNVDGCIGALFLDLMESCAAFSREEMDEIVKIGYLNGLFVLGRSIGLIGHALDQKRLNQPLYRHPWDDVMY 282
            S+ +L++AL+VEKYTL+KA NL+LNVDGCIG LFLDL+ SC  F +EE++EIV++GYLNG F++GRSIGLIGHALDQKR+ QPLYRHPW+DV+Y
Sbjct:  525 SSNYLEYALEVEKYTLQKANNLILNVDGCIGVLFLDLLHSCGLFKKEEIEEIVQVGYLNGFFIVGRSIGLIGHALDQKRMRQPLYRHPWEDVLY 618
[Close]
BLAST of mRNA_M-pyrifera_M_contig111197.2335.1 vs. uniprot
Match: A0A151Z2I7_9MYCE (ATP citrate synthase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z2I7_9MYCE)

HSP 1 Score: 155 bits (393), Expect = 1.210e-42
Identity = 68/94 (72.34%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:    1 STRHLDFALQVEKYTLKKAANLVLNVDGCIGALFLDLMESCAAFSREEMDEIVKIGYLNGLFVLGRSIGLIGHALDQKRLNQPLYRHPWDDVMY 282
            S+++LD+AL+VEKYTL+KA NL+LNVDGCIG LFLDL+ SC  FS EE+ EI+ +GYLNG F++GRSIGLIGHALDQKR+ QPLYRHPW+DV+Y
Sbjct:  521 SSQYLDYALEVEKYTLQKANNLILNVDGCIGVLFLDLLHSCQLFSMEEIKEIIDVGYLNGFFIVGRSIGLIGHALDQKRMRQPLYRHPWEDVLY 614
[Close]
BLAST of mRNA_M-pyrifera_M_contig111197.2335.1 vs. uniprot
Match: A0A1L2FUX8_9MYCE (ATP citrate synthase n=1 Tax=Synstelium polycarpum TaxID=361085 RepID=A0A1L2FUX8_9MYCE)

HSP 1 Score: 155 bits (393), Expect = 1.660e-42
Identity = 67/94 (71.28%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 STRHLDFALQVEKYTLKKAANLVLNVDGCIGALFLDLMESCAAFSREEMDEIVKIGYLNGLFVLGRSIGLIGHALDQKRLNQPLYRHPWDDVMY 282
            S+++L++AL+VEKYTL+KA NL+LNVDGCIG LFLDL+ SC  F +EE++EIV +GYLNG F++GRSIGLIGHALDQKR+ QPLYRHPW+DV+Y
Sbjct:  559 SSKYLNYALEVEKYTLQKANNLILNVDGCIGVLFLDLLHSCGLFKQEEIEEIVNVGYLNGFFIVGRSIGLIGHALDQKRMRQPLYRHPWEDVLY 652
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111197.2335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059LEK3_9CHLO9.570e-5180.85Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]
A0A7S4MH33_9EUKA4.430e-5086.17ATP citrate synthase n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4P9V1_9EUKA5.600e-4982.11Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A383VUY5_TETOB2.360e-4477.42ATP citrate synthase n=2 Tax=Scenedesmaceae TaxID=... [more]
I0YXK3_COCSC8.080e-4479.79ATP citrate synthase n=2 Tax=Coccomyxa TaxID=41891... [more]
D3BQ18_POLPP2.540e-4372.34ATP citrate synthase n=1 Tax=Polysphondylium palli... [more]
A0A842SWS9_9ARCH3.040e-4378.72ATP citrate synthase n=1 Tax=Candidatus Micrarchae... [more]
UPI000644A2468.890e-4371.28hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A151Z2I7_9MYCE1.210e-4272.34ATP citrate synthase n=1 Tax=Tieghemostelium lacte... [more]
A0A1L2FUX8_9MYCE1.660e-4271.28ATP citrate synthase n=1 Tax=Synstelium polycarpum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111197contigM-pyrifera_M_contig111197:305..592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score162.2
Seed ortholog evalue1.2e-37
Seed eggNOG ortholog248742.XP_005647666.1
Preferred nameACLB-1
KEGG rclassRC00004,RC00067
KEGG koko:K01648
KEGG ReactionR00352
KEGG Pathwayko00020,ko00720,ko01100,ko01110,ko01120,ko01130,map00020,map00720,map01100,map01110,map01120,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003878,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006084,GO:0006085,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009346,GO:0009987,GO:0016020,GO:0016740,GO:0016746,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0046912,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Citrate synthase, C-terminal domain
EggNOG OGs34KCZ@3041,37M9Y@33090,COG0045@1,KOG1254@2759
EC2.3.3.8
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Exons1
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.6403868-CDS-M-pyrifera_M_contig111197:304..5921622815623.6403868-CDS-M-pyrifera_M_contig111197:304..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111197 305..592 -
1692277492.5814853-CDS-M-pyrifera_M_contig111197:304..5921692277492.5814853-CDS-M-pyrifera_M_contig111197:304..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111197 305..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111197.2335.1prot_M-pyrifera_M_contig111197.2335.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111197 305..592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111197.2335.1

>prot_M-pyrifera_M_contig111197.2335.1 ID=prot_M-pyrifera_M_contig111197.2335.1|Name=mRNA_M-pyrifera_M_contig111197.2335.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
STRHLDFALQVEKYTLKKAANLVLNVDGCIGALFLDLMESCAAFSREEMD
EIVKIGYLNGLFVLGRSIGLIGHALDQKRLNQPLYRHPWDDVMYM*
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mRNA from alignment at M-pyrifera_M_contig111197:305..592-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111197.2335.1 ID=mRNA_M-pyrifera_M_contig111197.2335.1|Name=mRNA_M-pyrifera_M_contig111197.2335.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig111197:305..592- (Macrocystis pyrifera P11B4 male)
TCAACCAGGCACCTCGATTTCGCCCTCCAGGTTGAGAAGTACACTCTGAA
GAAGGCAGCCAACCTCGTGCTCAACGTCGACGGTTGCATTGGTGCCCTCT
TCCTCGACCTCATGGAGAGCTGCGCAGCTTTCTCCCGCGAGGAGATGGAC
GAGATTGTCAAGATTGGCTACCTGAATGGCCTGTTCGTTCTGGGCCGTTC
CATCGGTCTCATTGGCCACGCTCTGGACCAGAAGCGCCTCAACCAGCCTC
TCTACCGCCACCCCTGGGACGATGTCATGTACATGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111197:305..592-

>mRNA_M-pyrifera_M_contig111197.2335.1 ID=mRNA_M-pyrifera_M_contig111197.2335.1|Name=mRNA_M-pyrifera_M_contig111197.2335.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig111197:305..592- (Macrocystis pyrifera P11B4 male)
TCAACCAGGCACCTCGATTTCGCCCTCCAGGTTGAGAAGTACACTCTGAA
GAAGGCAGCCAACCTCGTGCTCAACGTCGACGGTTGCATTGGTGCCCTCT
TCCTCGACCTCATGGAGAGCTGCGCAGCTTTCTCCCGCGAGGAGATGGAC
GAGATTGTCAAGATTGGCTACCTGAATGGCCTGTTCGTTCTGGGCCGTTC
CATCGGTCTCATTGGCCACGCTCTGGACCAGAAGCGCCTCAACCAGCCTC
TCTACCGCCACCCCTGGGACGATGTCATGTACATGTAGTCAACCAGGCAC
CTCGATTTCGCCCTCCAGGTTGAGAAGTACACTCTGAAGAAGGCAGCCAA
CCTCGTGCTCAACGTCGACGGTTGCATTGGTGCCCTCTTCCTCGACCTCA
TGGAGAGCTGCGCAGCTTTCTCCCGCGAGGAGATGGACGAGATTGTCAAG
ATTGGCTACCTGAATGGCCTGTTCGTTCTGGGCCGTTCCATCGGTCTCAT
TGGCCACGCTCTGGACCAGAAGCGCCTCAACCAGCCTCTCTACCGCCACC
CCTGGGACGATGTCATGTACATGTAG
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