mRNA_M-pyrifera_M_contig111195.2334.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111195.2334.1
Unique NamemRNA_M-pyrifera_M_contig111195.2334.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111195.2334.1 vs. uniprot
Match: A0A356VJN7_9GAMM (Uncharacterized protein n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A356VJN7_9GAMM)

HSP 1 Score: 111 bits (277), Expect = 1.660e-26
Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 1 
Query:    1 KLADWDGEHYRAVQPIKDAVANDSTGTQRIAILYAQDQAALAQRMRFHLLPTVRVEHARRLSEGYVKHAGLKYDYVVLLSAPGRDPRSEPMFRAAGDRERLKHWRVMSVQGPVVLYATNRA 363
            KLADWDGE+YR V+ IK+  +N    T  + ILY +   A+AQRMRFHLLP +        +   +++A  ++DYVVLLS  G  P S+P+FR   +     +W ++ + GPV LYATNRA
Sbjct:  281 KLADWDGEYYRGVESIKELASNH---TNDVIILYQEGHGAMAQRMRFHLLPQIMARKLHTANASSIRNANKEFDYVVLLSESGSTPYSQPVFRTVLEFMSAANWSMVWMHGPVALYATNRA 398
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111195.2334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A356VJN7_9GAMM1.660e-2644.63Uncharacterized protein n=1 Tax=Halieaceae bacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111195contigM-pyrifera_M_contig111195:3..386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.6058397-CDS-M-pyrifera_M_contig111195:2..3861622815623.6058397-CDS-M-pyrifera_M_contig111195:2..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111195 3..386 +
1692277492.5676715-CDS-M-pyrifera_M_contig111195:2..3861692277492.5676715-CDS-M-pyrifera_M_contig111195:2..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111195 3..386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111195.2334.1prot_M-pyrifera_M_contig111195.2334.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111195 3..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111195.2334.1

>prot_M-pyrifera_M_contig111195.2334.1 ID=prot_M-pyrifera_M_contig111195.2334.1|Name=mRNA_M-pyrifera_M_contig111195.2334.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
KLADWDGEHYRAVQPIKDAVANDSTGTQRIAILYAQDQAALAQRMRFHLL
PTVRVEHARRLSEGYVKHAGLKYDYVVLLSAPGRDPRSEPMFRAAGDRER
LKHWRVMSVQGPVVLYATNRAHSRGKS*
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mRNA from alignment at M-pyrifera_M_contig111195:3..386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111195.2334.1 ID=mRNA_M-pyrifera_M_contig111195.2334.1|Name=mRNA_M-pyrifera_M_contig111195.2334.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig111195:3..386+ (Macrocystis pyrifera P11B4 male)
AAGTTGGCCGACTGGGATGGTGAGCACTACCGCGCGGTTCAGCCAATCAA
GGACGCTGTTGCCAACGACAGCACCGGCACACAGCGCATAGCAATTCTCT
ATGCGCAGGATCAGGCTGCGCTGGCACAGAGAATGCGCTTTCATTTGCTG
CCAACCGTACGGGTGGAGCACGCGCGCCGGCTCAGCGAAGGCTACGTCAA
ACATGCCGGCCTGAAATATGATTACGTGGTTTTATTATCGGCGCCGGGCA
GGGATCCCCGCTCGGAACCCATGTTCAGAGCAGCAGGGGACCGGGAACGT
CTCAAGCACTGGCGCGTAATGTCTGTGCAGGGACCGGTAGTTTTGTATGC
CACGAACCGGGCGCACAGCAGGGGGAAATCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111195:3..386+

>mRNA_M-pyrifera_M_contig111195.2334.1 ID=mRNA_M-pyrifera_M_contig111195.2334.1|Name=mRNA_M-pyrifera_M_contig111195.2334.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig111195:3..386+ (Macrocystis pyrifera P11B4 male)
AAGTTGGCCGACTGGGATGGTGAGCACTACCGCGCGGTTCAGCCAATCAA
GGACGCTGTTGCCAACGACAGCACCGGCACACAGCGCATAGCAATTCTCT
ATGCGCAGGATCAGGCTGCGCTGGCACAGAGAATGCGCTTTCATTTGCTG
CCAACCGTACGGGTGGAGCACGCGCGCCGGCTCAGCGAAGGCTACGTCAA
ACATGCCGGCCTGAAATATGATTACGTGGTTTTATTATCGGCGCCGGGCA
GGGATCCCCGCTCGGAACCCATGTTCAGAGCAGCAGGGGACCGGGAACGT
CTCAAGCACTGGCGCGTAATGTCTGTGCAGGGACCGGTAGTTTTGTATGC
CACGAACCGGGCGCACAGCAGGGGGAAATCATGAAAGTTGGCCGACTGGG
ATGGTGAGCACTACCGCGCGGTTCAGCCAATCAAGGACGCTGTTGCCAAC
GACAGCACCGGCACACAGCGCATAGCAATTCTCTATGCGCAGGATCAGGC
TGCGCTGGCACAGAGAATGCGCTTTCATTTGCTGCCAACCGTACGGGTGG
AGCACGCGCGCCGGCTCAGCGAAGGCTACGTCAAACATGCCGGCCTGAAA
TATGATTACGTGGTTTTATTATCGGCGCCGGGCAGGGATCCCCGCTCGGA
ACCCATGTTCAGAGCAGCAGGGGACCGGGAACGTCTCAAGCACTGGCGCG
TAATGTCTGTGCAGGGACCGGTAGTTTTGTATGCCACGAACCGGGCGCAC
AGCAGGGGGAAATCATGA
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