mRNA_M-pyrifera_M_contig111189.2331.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111189.2331.1
Unique NamemRNA_M-pyrifera_M_contig111189.2331.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111189.2331.1 vs. uniprot
Match: A0A7S6MYS1_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Ignavibacteriales bacterium TaxID=2049428 RepID=A0A7S6MYS1_9BACT)

HSP 1 Score: 127 bits (320), Expect = 5.220e-31
Identity = 84/194 (43.30%), Postives = 113/194 (58.25%), Query Frame = 1
Query:    1 ISSLSELYWISLTESVWDSSFQQTVNIDAYETENWDSGMGFSPIGTTSVQFTGTYDGNGYTISGLTINRATKDKIGLFGDVGGASLTNIGLEDVNIIGKNSTGALAGIIDVQFDTLSVSVNYSTGNXXXXXXXXXX-IGDIYDSSAEVSITNNYSKASV-----AASGAYAGGLIGSSYP-AFSNSYATGNVSG 561
            +S+LS L WIS   S W  S++QT NIDA  T  W+ G GF PIG +   FTG YDG G+TIS LTINR++   IG+FG V G ++ N+GLE +   GK +TGAL G        ++V   +STG            IG+ Y  S   S+TN+YS A+V      ++ +YAGG IG++   + S  Y+TG VSG
Sbjct:   35 VSTLSHLLWISTNSSGWSYSYEQTANIDASVTSGWNGGEGFLPIGNSYPYFTGIYDGQGFTISNLTINRSSSYNIGMFGIVSGGTIKNLGLESIYSYGKGTTGALVGY----GSDMTVQNCFSTGLVRCEYDKAGGLIGENYYGSC--SVTNSYSSATVQGAYAGSNSSYAGGFIGNNNSGSISQCYSTGPVSG 222          
BLAST of mRNA_M-pyrifera_M_contig111189.2331.1 vs. uniprot
Match: A0A381TZ91_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381TZ91_9ZZZZ)

HSP 1 Score: 124 bits (312), Expect = 1.570e-29
Identity = 72/172 (41.86%), Postives = 105/172 (61.05%), Query Frame = 1
Query:    1 ISSLSELYWISLTESVWDSSFQQTVNIDAYETENWDSGMGFSPIGTTSVQFTGTYDGNGYTISGLTINRATKDKIGLFGDV-GGASLTNIGLEDVNIIGKNSTGALAGIIDVQFDTLSVSVN-YSTGNXXXXXXXXXXIGDIYDSSAEVSITNNYSKASVAASGAYAGGLIG 510
            I++L +L WI+     W++ + QT +IDA  T +WDSG GF+PIG  + +FTG YDG+G+TISGLTINR    ++GLFG    GA++ N+GL +V+I+G ++ GAL G    ++D  S+  N YSTG           +G IY     + + N+YS  +V  +  Y GGL G
Sbjct: 1194 IATLDDLNWITQNSGQWNAYYIQTADIDASSTSSWDSGSGFTPIGNGTTKFTGLYDGSGFTISGLTINRPEISQVGLFGSTTNGATIQNLGLTNVSIVGLDNVGALLGFN--RYDNQSIIRNCYSTGTVSGVDWVGGLVGRIYT----IDVMNSYSTCNVTGNEDYVGGLGG 1359          
BLAST of mRNA_M-pyrifera_M_contig111189.2331.1 vs. uniprot
Match: A0A382KGE3_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382KGE3_9ZZZZ)

HSP 1 Score: 120 bits (301), Expect = 7.100e-29
Identity = 63/126 (50.00%), Postives = 86/126 (68.25%), Query Frame = 1
Query:    1 ISSLSELYWISLTESVWDSSFQQTVNIDAYETENWDSGMGFSPIGTTSVQFTGTYDGNGYTISGLTINRATKDKIGLFGDVGGASLTNIGLEDVNIIGKNSTGALAGIIDVQFDTLSVSVNYSTGN 378
            IS+L  L+WI+  +  WDS++ QT NIDA+ T  WDS   FSPIG  S +FTG+YDG+GYTI+GLTI+R + + IGLFG   GA++ ++G+ +VNI GK   GAL GI        ++S  YSTG+
Sbjct:    1 ISTLDHLFWITENDDKWDSTYIQTANIDAFSTSGWDSDSVFSPIGNNSTKFTGSYDGDGYTINGLTIDRESTNYIGLFGYTDGATIQDLGVTNVNITGKYYVGALVGINKGS----TISNCYSTGS 122          
BLAST of mRNA_M-pyrifera_M_contig111189.2331.1 vs. uniprot
Match: A0A382U9Z8_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382U9Z8_9ZZZZ)

HSP 1 Score: 116 bits (290), Expect = 8.200e-29
Identity = 63/129 (48.84%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 ISSLSELYWISLTESVWDSSFQQTVNIDAYETENWDSGMGFSPIGTTSVQFTGTYDGNGYTISGLTINRATKDKIGLFGDVGGASLTNIGLEDVNIIGKNSTGALAGIIDV---QFDTLSVSVNYSTGN 378
            IS+L  L WI+  +  WD  + QT NIDA+ T + +   GFSPIG  S QFTG+YDG+GYTI+GLTI R+T  +IGLFG + GA + ++G+ +VNI G +  GAL GI+D    + D  ++S  YSTG+
Sbjct:   40 ISTLEHLLWITEYDDEWDKHYIQTANIDAFSTSSLNDSSGFSPIGNNSTQFTGSYDGDGYTINGLTIARSTS-RIGLFGYIDGAIIQDLGVTNVNITGWHYVGALVGIVDNINGEIDGSTISNCYSTGS 167          
BLAST of mRNA_M-pyrifera_M_contig111189.2331.1 vs. uniprot
Match: A0A0S2I4Y6_9BACT (HYR domain-containing protein n=1 Tax=Salinivirga cyanobacteriivorans TaxID=1307839 RepID=A0A0S2I4Y6_9BACT)

HSP 1 Score: 119 bits (298), Expect = 1.080e-27
Identity = 70/184 (38.04%), Postives = 98/184 (53.26%), Query Frame = 1
Query:    1 ISSLSELYWISLTESVWDSSFQQTVNIDAYETENWDSGMGFSPIGTTSVQFTGTYDGNGYTISGLTINRATKDKIGLFGDVGGASLTNIGLEDVNIIGKNSTGALAGIIDVQFDTLSVSVNYSTGNXXXXXXXXXXIGDIYDSSAEVSITNNYSKASVAASGAYAGGLIGSSYPAFSNSYATGN 552
            I SL  LYW+S   ++W+  ++Q  NIDA  TE WD G GF PIG    +F+G+Y+G GY I  LTINR     IG FG V    L ++GL +VNIIG  + G L G +       SVS  ++TGN                 + + ++  +YS A V +S    GGL+G ++   S+ YA G+
Sbjct:   44 IESLDNLYWLSQDTTLWELHYEQVANIDASATETWDDGAGFFPIGNNDKEFSGSYNGGGYVIYNLTINRGAVGNIGFFGRVNEGQLDSVGLSNVNIIGAVNVGGLIGYLPAG----SVSYCFTTGNVTSVTPNNYSAAGGLIGNCKDTLKYSYSMADVTSSNQIGGGLVGVNHSLISDCYARGS 223          
BLAST of mRNA_M-pyrifera_M_contig111189.2331.1 vs. uniprot
Match: A0A7V1TSC6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7V1TSC6_9BACT)

HSP 1 Score: 112 bits (281), Expect = 1.590e-27
Identity = 73/192 (38.02%), Postives = 101/192 (52.60%), Query Frame = 1
Query:    1 ISSLSELYWISLTESVWDSSFQQTVNIDAYETENWDSGMGFSPIGTTSVQFTGTYDGNGYTISGLTINRATKDKIGLFGDVGGASLTNIGLEDVNIIGKNSTGALAGIIDVQFDTLSVSVNYSTGNXXXXXXXXXXIGDIYDSSAEVSITNNYSKASVAASGAYAGGLIGS----SYPAFSNSYATGNVSGT 564
            I+SL  LYW++   S W   F+QT NIDA  +  W SG GFSPIG     FTGTYDGN YTIS L INR + + +G+FG+   A++ N+GL +VNI G    G L G +     + +++  Y+TG+          +G I +S+   S            SG + GG +G     S    ++    GNVSGT
Sbjct:   38 IASLENLYWVTQNASSWSKYFKQTANIDASNSSGWASGSGFSPIGNAGTAFTGTYDGNHYTISNLYINRPSTNYVGMFGNSTTATIKNLGLVNVNITGNLQVGGLIGSLG---GSATITNCYTTGSVAGDSLVGGLVGLISNSTG--SXXXXXXXXXXXGSGQFIGGFVGKMDNISSTTVNSXXXXGNVSGT 224          
BLAST of mRNA_M-pyrifera_M_contig111189.2331.1 vs. uniprot
Match: A0A7Y5GMX3_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Ignavibacteriaceae bacterium TaxID=2651163 RepID=A0A7Y5GMX3_9BACT)

HSP 1 Score: 109 bits (273), Expect = 2.550e-24
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 ISSLSELYWISLTESVWDSSFQQTVNIDAYETENWDSGMGFSPIGTTSVQFTGTYDGNGYTISGLTINRATKDKIGLFGDVGGASLTNIGLEDVNIIGKNSTGALAG 321
            ISS+  LYW++   S W+  F+QT NI A  T  W+SG G+ PIG +S  FTG YDGNGY I  L INR +   IGLFG V G +L N+GL +VN+ G + TGAL G
Sbjct:  807 ISSIDNLYWLTNNPSAWNKQFRQTANIRASATRYWNSGAGWQPIGASSPYFTGVYDGNGYAIDSLYINRPSTVVIGLFGYVIGGTLKNLGLTNVNVTGLDFTGALCG 913          
BLAST of mRNA_M-pyrifera_M_contig111189.2331.1 vs. uniprot
Match: A0A1B6YCU7_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. EhC07 TaxID=1849360 RepID=A0A1B6YCU7_9BACT)

HSP 1 Score: 109 bits (272), Expect = 3.620e-24
Identity = 78/206 (37.86%), Postives = 114/206 (55.34%), Query Frame = 1
Query:    1 ISSLSELYWISLTESVWDSSFQQTVNIDAYETENWDSGMGFSPIGTTSVQFTGTYDGNGYTISGLTINRATKDKIGLFGDVGGASLTNIGLEDVNIIGKNSTGALAGIIDVQFDTLSVSVNYSTGNXXXXXXXXXXIGDIYDSSAEVSITNNYSKA-----SVAASGAYAGGLIG-------SSYPAFSNSYATGNVSGTSYVGGL 582
            I +L +L  IS   S W+    QT NI+A ET +W+SG GF P+GT   +FTG Y+G  YTI+GL I+R +    G FG   GA+++N+ L+ V+I G +  G L G    Q     +S  + +G+          +GD+     EVS++N+ S A     S++   + AGGLIG       S+    S S+ATGNV+G ++VGGL
Sbjct:  819 IKNLIQLRLISADTSFWNEHLIQTANINASETSSWNSGSGFVPLGTAFNEFTGAYNGQNYTITGLYISRGSGT--GFFGRTNGANISNVILDQVDITGSSQVGGLIG----QGKKTVISNAHVSGSITGTILIGGLVGDLV---TEVSVSNSSSSATXXXXSLSNQSSLAGGLIGRASDLSDSTLYFISTSHATGNVTGENFVGGL 1015          
BLAST of mRNA_M-pyrifera_M_contig111189.2331.1 vs. uniprot
Match: B3QTX4_CHLT3 (Filamentous haemagglutinin family outer membrane protein n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) TaxID=517418 RepID=B3QTX4_CHLT3)

HSP 1 Score: 107 bits (266), Expect = 2.240e-23
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    1 ISSLSELYWISLTESVWDSS--FQQTVNIDAYETENWDSGMGFSPIGTTSV---QFTGTYDGNGYTISGLTINRATKDKIGLFGDVGGASLTNIGLEDVNIIGKNSTGALAG 321
            I++++ LYW+S T++ W+S   ++QT +IDA  T + D G G++PIG   V   +FTG YDG GYTI GLTINR T++  GLFG+  GA + NI L +V + GKNSTG L G
Sbjct:   41 IANINNLYWLSQTKTEWNSEHYYKQTADIDASGTSSLDGGKGWTPIGEDGVFAKKFTGHYDGQGYTIDGLTINRPTENTTGLFGEAKGAEIKNIALTNVTVSGKNSTGGLVG 152          
BLAST of mRNA_M-pyrifera_M_contig111189.2331.1 vs. uniprot
Match: A0A382GEI4_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382GEI4_9ZZZZ)

HSP 1 Score: 105 bits (262), Expect = 3.040e-23
Identity = 53/125 (42.40%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 ISSLSELYWISLTESVWDSSFQQTVNIDAYETENWDSGMGFSPIGTTSVQFTGTYDGNGYTISGLTINRATKDKIGLFGDVGGASLTNIGLEDVNIIGKNSTGALAGIIDVQFDTLSVSVNYSTG 375
            + +L+ LYW++     WD  + QT +IDA  T  WD G+GF+ IG +S +FTG+Y+G GYTI+GL INR + +  GLFG   G+++ ++G+ +VNI G + TG LAG I       +++  Y+TG
Sbjct:   36 VGTLNNLYWMTENSGEWDKYYIQTSDIDASSTATWDDGLGFTSIGNSSTKFTGSYEGGGYTINGLNINRPSTNYTGLFGYTIGSTIKDLGVINVNIAGADRTGGLAGWIK---SNTTINNCYTTG 157          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111189.2331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6MYS1_9BACT5.220e-3143.30T9SS type A sorting domain-containing protein n=1 ... [more]
A0A381TZ91_9ZZZZ1.570e-2941.86Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A382KGE3_9ZZZZ7.100e-2950.00Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A382U9Z8_9ZZZZ8.200e-2948.84Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A0S2I4Y6_9BACT1.080e-2738.04HYR domain-containing protein n=1 Tax=Salinivirga ... [more]
A0A7V1TSC6_9BACT1.590e-2738.02Uncharacterized protein (Fragment) n=1 Tax=Ignavib... [more]
A0A7Y5GMX3_9BACT2.550e-2452.34T9SS type A sorting domain-containing protein n=1 ... [more]
A0A1B6YCU7_9BACT3.620e-2437.86Uncharacterized protein n=1 Tax=Balneola sp. EhC07... [more]
B3QTX4_CHLT32.240e-2350.00Filamentous haemagglutinin family outer membrane p... [more]
A0A382GEI4_9ZZZZ3.040e-2342.40Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111189contigM-pyrifera_M_contig111189:12..593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.2
Seed ortholog evalue3.5e-23
Seed eggNOG ortholog517418.Ctha_1865
KEGG koko:K14645
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,COG5184@2,COG5492@1,COG5492@2
COG Functional cat.DZ
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110
Exons1
Model size582
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.5070987-CDS-M-pyrifera_M_contig111189:11..5931622815623.5070987-CDS-M-pyrifera_M_contig111189:11..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111189 12..593 +
1692277492.5286493-CDS-M-pyrifera_M_contig111189:11..5931692277492.5286493-CDS-M-pyrifera_M_contig111189:11..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111189 12..593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111189.2331.1prot_M-pyrifera_M_contig111189.2331.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111189 12..593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111189.2331.1

>prot_M-pyrifera_M_contig111189.2331.1 ID=prot_M-pyrifera_M_contig111189.2331.1|Name=mRNA_M-pyrifera_M_contig111189.2331.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
ISSLSELYWISLTESVWDSSFQQTVNIDAYETENWDSGMGFSPIGTTSVQ
FTGTYDGNGYTISGLTINRATKDKIGLFGDVGGASLTNIGLEDVNIIGKN
STGALAGIIDVQFDTLSVSVNYSTGNVSGNHHVGGLIGDIYDSSAEVSIT
NNYSKASVAASGAYAGGLIGSSYPAFSNSYATGNVSGTSYVGGL
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mRNA from alignment at M-pyrifera_M_contig111189:12..593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111189.2331.1 ID=mRNA_M-pyrifera_M_contig111189.2331.1|Name=mRNA_M-pyrifera_M_contig111189.2331.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig111189:12..593+ (Macrocystis pyrifera P11B4 male)
ATCTCTTCCCTTTCAGAATTATACTGGATCAGTTTGACCGAAAGCGTTTG GGACTCCAGTTTTCAACAAACGGTGAATATCGATGCCTATGAAACCGAAA ACTGGGATTCCGGCATGGGCTTTTCCCCTATCGGAACAACTTCTGTGCAA TTCACCGGAACGTACGATGGCAATGGCTACACAATTAGTGGCTTGACCAT CAATCGCGCAACTAAAGATAAGATTGGCTTATTTGGAGATGTTGGAGGAG CTTCCCTCACAAATATTGGTCTGGAAGACGTCAATATAATTGGCAAAAAT TCCACTGGTGCCCTGGCAGGAATTATTGATGTACAATTCGATACACTTAG CGTTTCGGTAAATTATTCAACGGGAAACGTGAGCGGTAACCATCATGTAG GAGGACTTATTGGCGATATATATGATTCCAGCGCTGAGGTTAGCATCACG AATAACTATTCCAAAGCTTCCGTAGCCGCTTCAGGGGCATACGCAGGGGG GCTTATAGGAAGCTCCTATCCCGCCTTTTCCAATAGTTACGCTACCGGGA ATGTAAGCGGCACTTCTTATGTCGGGGGCCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111189:12..593+

>mRNA_M-pyrifera_M_contig111189.2331.1 ID=mRNA_M-pyrifera_M_contig111189.2331.1|Name=mRNA_M-pyrifera_M_contig111189.2331.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig111189:12..593+ (Macrocystis pyrifera P11B4 male)
ATCTCTTCCCTTTCAGAATTATACTGGATCAGTTTGACCGAAAGCGTTTG
GGACTCCAGTTTTCAACAAACGGTGAATATCGATGCCTATGAAACCGAAA
ACTGGGATTCCGGCATGGGCTTTTCCCCTATCGGAACAACTTCTGTGCAA
TTCACCGGAACGTACGATGGCAATGGCTACACAATTAGTGGCTTGACCAT
CAATCGCGCAACTAAAGATAAGATTGGCTTATTTGGAGATGTTGGAGGAG
CTTCCCTCACAAATATTGGTCTGGAAGACGTCAATATAATTGGCAAAAAT
TCCACTGGTGCCCTGGCAGGAATTATTGATGTACAATTCGATACACTTAG
CGTTTCGGTAAATTATTCAACGGGAAACGTGAGCGGTAACCATCATGTAG
GAGGACTTATTGGCGATATATATGATTCCAGCGCTGAGGTTAGCATCACG
AATAACTATTCCAAAGCTTCCGTAGCCGCTTCAGGGGCATACGCAGGGGG
GCTTATAGGAAGCTCCTATCCCGCCTTTTCCAATAGTTACGCTACCGGGA
ATGTAAGCGGCACTTCTTATGTCGGGGGCCTTATCTCTTCCCTTTCAGAA
TTATACTGGATCAGTTTGACCGAAAGCGTTTGGGACTCCAGTTTTCAACA
AACGGTGAATATCGATGCCTATGAAACCGAAAACTGGGATTCCGGCATGG
GCTTTTCCCCTATCGGAACAACTTCTGTGCAATTCACCGGAACGTACGAT
GGCAATGGCTACACAATTAGTGGCTTGACCATCAATCGCGCAACTAAAGA
TAAGATTGGCTTATTTGGAGATGTTGGAGGAGCTTCCCTCACAAATATTG
GTCTGGAAGACGTCAATATAATTGGCAAAAATTCCACTGGTGCCCTGGCA
GGAATTATTGATGTACAATTCGATACACTTAGCGTTTCGGTAAATTATTC
AACGGGAAACGTGAGCGGTAACCATCATGTAGGAGGACTTATTGGCGATA
TATATGATTCCAGCGCTGAGGTTAGCATCACGAATAACTATTCCAAAGCT
TCCGTAGCCGCTTCAGGGGCATACGCAGGGGGGCTTATAGGAAGCTCCTA
TCCCGCCTTTTCCAATAGTTACGCTACCGGGAATGTAAGCGGCACTTCTT
ATGTCGGGGGCCTT
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