mRNA_M-pyrifera_M_contig101071.231.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101071.231.1
Unique NamemRNA_M-pyrifera_M_contig101071.231.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101071.231.1 vs. uniprot
Match: UPI00160102B7 (uncharacterized protein LOC118427567 isoform X1 n=3 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160102B7)

HSP 1 Score: 60.8 bits (146), Expect = 1.220e-9
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 QCFCGDTFDAHGKINESDCSSPCEGDSADTCGGRWALSVYSSM 129
            +CFCGD+F   G   ES+CS+PC G SADTCGG W  S+Y ++
Sbjct:  386 ECFCGDSFGQFGAAPESECSTPCTGSSADTCGGNWRNSIYRTV 428          
BLAST of mRNA_M-pyrifera_M_contig101071.231.1 vs. uniprot
Match: UPI001459189B (uncharacterized protein LOC117321161 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001459189B)

HSP 1 Score: 59.3 bits (142), Expect = 4.250e-9
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1
Query:    1 QCFCGDTFDAHGKINESDCSSPCEGDSADTCGGRWALSVYSS 126
            QC+CGD  D H   +ESDC++PC G+S + CGG W +SVY +
Sbjct:   88 QCYCGDNHDRHSMASESDCNTPCAGNSKEICGGTWRISVYGT 129          
BLAST of mRNA_M-pyrifera_M_contig101071.231.1 vs. uniprot
Match: A0A0M8MUP5_9HYPO (WSC domain-containing protein 2 n=1 Tax=Escovopsis weberi TaxID=150374 RepID=A0A0M8MUP5_9HYPO)

HSP 1 Score: 59.3 bits (142), Expect = 4.260e-9
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 QCFCGDTFDAHGKINESDCSSPCEGDSADTCGGRWALSVYSS 126
            QCFCGD      KI+ES+CS PCEGD+++ CGG  ALS+YSS
Sbjct:  496 QCFCGDKLVGSSKIDESECSMPCEGDASEICGGGSALSMYSS 537          
BLAST of mRNA_M-pyrifera_M_contig101071.231.1 vs. uniprot
Match: A0A5N5MU30_9PEZI (Putative WSC domain protein n=2 Tax=Coniochaeta sp. 2T2.1 TaxID=1571157 RepID=A0A5N5MU30_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 1.090e-8
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    1 QCFCGDTFDAHGKINESDCSSPCEGDSADTCGGRWALSVYS 123
            QC+CG++      I+ES+C  PCEG++ +TCGG WALSVYS
Sbjct:  547 QCYCGNSLTGSEPIDESECDMPCEGETKETCGGGWALSVYS 587          
BLAST of mRNA_M-pyrifera_M_contig101071.231.1 vs. uniprot
Match: A0A420YJ70_9PEZI (WSC domain-containing protein n=1 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420YJ70_9PEZI)

HSP 1 Score: 56.6 bits (135), Expect = 3.810e-8
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 1
Query:    1 QCFCGDTFDAHGKINESDCSSPCEGDSADTCGGRWALSVYSS 126
            QC+CGD      ++ ES+C   CE D A TCGG WALSVYS+
Sbjct:  548 QCYCGDALTGSSQLEESECDLACEDDKAQTCGGGWALSVYSA 589          
BLAST of mRNA_M-pyrifera_M_contig101071.231.1 vs. uniprot
Match: M1W1I2_CLAP2 (WSC domain-containing protein n=1 Tax=Claviceps purpurea (strain 20.1) TaxID=1111077 RepID=M1W1I2_CLAP2)

HSP 1 Score: 56.6 bits (135), Expect = 3.810e-8
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 QCFCGDTFDAHGKINESDCSSPCEGDSADTCGGRWALSVYS 123
            QC+CG+      K+++S+C   CEGD ADTCGG WALSV+S
Sbjct:  528 QCYCGNELIGSQKLDDSECHVACEGDEADTCGGSWALSVFS 568          
BLAST of mRNA_M-pyrifera_M_contig101071.231.1 vs. uniprot
Match: A0A1J7K0T4_9PEZI (WSC-domain-containing protein n=1 Tax=Coniochaeta ligniaria NRRL 30616 TaxID=1408157 RepID=A0A1J7K0T4_9PEZI)

HSP 1 Score: 56.6 bits (135), Expect = 3.810e-8
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 QCFCGDTFDAHGKINESDCSSPCEGDSADTCGGRWALSVYSS 126
            QC+CG++      + ES C++PCEG+ ++TCGG WALSVYS+
Sbjct:  487 QCYCGNSLAGSELLEESACATPCEGEGSETCGGGWALSVYSA 528          
BLAST of mRNA_M-pyrifera_M_contig101071.231.1 vs. uniprot
Match: A0A0B4IDZ2_METMF (WSC domain-containing protein (Fragment) n=8 Tax=Metarhizium TaxID=5529 RepID=A0A0B4IDZ2_METMF)

HSP 1 Score: 56.2 bits (134), Expect = 5.210e-8
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    1 QCFCGDTFDAHGKINESDCSSPCEGDSADTCGGRWALSVYS 123
            QC+CG+      K+++S+C+  CEGD +DTCGG WAL+VYS
Sbjct:  556 QCYCGNELVGSEKLDDSECNIACEGDKSDTCGGGWALTVYS 596          
BLAST of mRNA_M-pyrifera_M_contig101071.231.1 vs. uniprot
Match: A0A2T3ZEH4_9HYPO (WSC domain-containing protein n=5 Tax=Trichoderma TaxID=5543 RepID=A0A2T3ZEH4_9HYPO)

HSP 1 Score: 56.2 bits (134), Expect = 5.210e-8
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 QCFCGDTFDAHGKINESDCSSPCEGDSADTCGGRWALSVYS 123
            QC+CG+      K+ ES C++PCEG+S + CGG WA+SVYS
Sbjct:  552 QCYCGNELVGSSKLAESQCATPCEGNSKEVCGGGWAISVYS 592          
BLAST of mRNA_M-pyrifera_M_contig101071.231.1 vs. uniprot
Match: R8BFI0_PHAM7 (Putative wsc domain protein n=1 Tax=Phaeoacremonium minimum (strain UCR-PA7) TaxID=1286976 RepID=R8BFI0_PHAM7)

HSP 1 Score: 56.2 bits (134), Expect = 5.210e-8
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    1 QCFCGDTFDAHGKINESDCSSPCEGDSADTCGGRWALSVYSS 126
            QCFCG+      ++ ES C + CEGDSADTCGG W+L++YSS
Sbjct:  498 QCFCGNELVGSEQLAESLCDAACEGDSADTCGGDWSLTLYSS 539          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101071.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00160102B71.220e-955.81uncharacterized protein LOC118427567 isoform X1 n=... [more]
UPI001459189B4.250e-952.38uncharacterized protein LOC117321161 n=1 Tax=Pecte... [more]
A0A0M8MUP5_9HYPO4.260e-961.90WSC domain-containing protein 2 n=1 Tax=Escovopsis... [more]
A0A5N5MU30_9PEZI1.090e-856.10Putative WSC domain protein n=2 Tax=Coniochaeta sp... [more]
A0A420YJ70_9PEZI3.810e-854.76WSC domain-containing protein n=1 Tax=Coniochaeta ... [more]
M1W1I2_CLAP23.810e-856.10WSC domain-containing protein n=1 Tax=Claviceps pu... [more]
A0A1J7K0T4_9PEZI3.810e-852.38WSC-domain-containing protein n=1 Tax=Coniochaeta ... [more]
A0A0B4IDZ2_METMF5.210e-853.66WSC domain-containing protein (Fragment) n=8 Tax=M... [more]
A0A2T3ZEH4_9HYPO5.210e-853.66WSC domain-containing protein n=5 Tax=Trichoderma ... [more]
R8BFI0_PHAM75.210e-857.14Putative wsc domain protein n=1 Tax=Phaeoacremoniu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101071contigM-pyrifera_M_contig101071:3..134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815508.0698345-CDS-M-pyrifera_M_contig101071:2..1341622815508.0698345-CDS-M-pyrifera_M_contig101071:2..134Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101071 3..134 +
1692277442.893989-CDS-M-pyrifera_M_contig101071:2..1341692277442.893989-CDS-M-pyrifera_M_contig101071:2..134Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101071 3..134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101071.231.1prot_M-pyrifera_M_contig101071.231.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101071 3..134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101071.231.1

>prot_M-pyrifera_M_contig101071.231.1 ID=prot_M-pyrifera_M_contig101071.231.1|Name=mRNA_M-pyrifera_M_contig101071.231.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
QCFCGDTFDAHGKINESDCSSPCEGDSADTCGGRWALSVYSSM*
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mRNA from alignment at M-pyrifera_M_contig101071:3..134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101071.231.1 ID=mRNA_M-pyrifera_M_contig101071.231.1|Name=mRNA_M-pyrifera_M_contig101071.231.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig101071:3..134+ (Macrocystis pyrifera P11B4 male)
CAGTGTTTCTGCGGCGACACATTCGACGCCCACGGAAAAATCAACGAGTC GGACTGCAGCTCCCCTTGCGAAGGCGACTCCGCCGACACGTGTGGTGGGA GATGGGCTCTCAGCGTTTACTCGTCTATGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101071:3..134+

>mRNA_M-pyrifera_M_contig101071.231.1 ID=mRNA_M-pyrifera_M_contig101071.231.1|Name=mRNA_M-pyrifera_M_contig101071.231.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig101071:3..134+ (Macrocystis pyrifera P11B4 male)
CAGTGTTTCTGCGGCGACACATTCGACGCCCACGGAAAAATCAACGAGTC
GGACTGCAGCTCCCCTTGCGAAGGCGACTCCGCCGACACGTGTGGTGGGA
GATGGGCTCTCAGCGTTTACTCGTCTATGTAGCAGTGTTTCTGCGGCGAC
ACATTCGACGCCCACGGAAAAATCAACGAGTCGGACTGCAGCTCCCCTTG
CGAAGGCGACTCCGCCGACACGTGTGGTGGGAGATGGGCTCTCAGCGTTT
ACTCGTCTATGTAG
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