mRNA_M-pyrifera_M_contig111031.2307.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: UPI0015D765CF (VCBS repeat-containing protein n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI0015D765CF) HSP 1 Score: 55.5 bits (132), Expect = 7.530e-7 Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 19 FVTSVATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDI 246
+ TSVA ADV+QDG++D+VVG + + +F NGDG F + + SV + D+DGDG PDI
Sbjct: 534 YPTSVALADVNQDGHIDMVVGVVNEPGNKEYIAVFPGNGDGTFGTSSKVSTG---SGYATESVVVEDFDGDGVPDI 606
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A1F3NDS7_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium RBG_13_42_15 TaxID=1797355 RepID=A0A1F3NDS7_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 7.900e-7 Identity = 32/84 (38.10%), Postives = 47/84 (55.95%), Query Frame = 1
Query: 19 FVTSVATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDILTQEWFTT 270
++ VA AD D DG +D+++ + G + I+ +NG+G F I ++G +G SV GDYD DGFPDIL + TT
Sbjct: 253 YMGCVAWADYDNDGYLDILLTGS--SSSGYISKIYHNNGEGNFTEQTSINLTG----VGYSSVAWGDYDNDGFPDILLTGYSTT 330
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A4Q2WW21_9GAMM (VCBS repeat-containing protein n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A4Q2WW21_9GAMM) HSP 1 Score: 53.5 bits (127), Expect = 3.610e-6 Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 19 FVTSVATADVDQDGNMDVVVGYADIEPEGALLY---IFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDI 246
F T++A+AD+D DG++D+VVG + Y + L+ G G++ P ++P+ + V+V +GD DGDG PDI
Sbjct: 78 FATTLASADLDDDGDIDLVVG-------NGMSYDVSVLLAEGVGRYAPALNLPLWA--TELSHVAVAVGDLDGDGHPDI 147
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A2V9KW16_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9KW16_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 4.680e-6 Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1
Query: 19 FVTSVATADVDQDGNMDVVVGYADIEPEGAL---LYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDI 246
+ +SVATAD + DG +D+ VGY + P L L + L NGDG F+ P SGP + V D +GDG D+
Sbjct: 330 YSSSVATADFNGDGKLDLAVGYYSVPPSHTLEGSLSVMLGNGDGTFQNPSTYTASGP-----VTGVLPMDLNGDGLLDL 403
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A2V8VE44_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8VE44_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 4.840e-6 Identity = 29/80 (36.25%), Postives = 42/80 (52.50%), Query Frame = 1
Query: 7 VGRGFVTSVATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDI 246
+ G +A AD+++DG D+V G +F+ GDG F P +PV+ G S+T+GD+DGDG PDI
Sbjct: 170 ISPGAPGFLAVADLNRDGRSDLVAG----------SQVFIGRGDGTFLPAFSVPVAS-----GFTSLTVGDFDGDGRPDI 234
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A2V9Z9N4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9Z9N4_9BACT) HSP 1 Score: 52.4 bits (124), Expect = 8.900e-6 Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 1
Query: 28 SVATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDILTQEW 261
S+A AD ++DGN+D+ VG G + +FL N DG F+ + PV P SV D +GDG+PD++T +
Sbjct: 301 SLAAADFNKDGNLDIAVGVVG----GKSVSVFLGNVDGTFQQAANFPVGNNPW-----SVASADVNGDGYPDLVTANY 369
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: UPI0019E6A31D (VCBS repeat-containing protein n=1 Tax=Oscillatoriales cyanobacterium LEGE 11467 TaxID=1828826 RepID=UPI0019E6A31D) HSP 1 Score: 50.4 bits (119), Expect = 4.310e-5 Identity = 32/81 (39.51%), Postives = 41/81 (50.62%), Query Frame = 1
Query: 28 SVATADVDQDGNMDVVVGYADIEPE------GALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDILT 252
S+ AD+D DG+ D+VV I+P G L I +NGDG F P + P SVT GD+DGDG D+ T
Sbjct: 147 SIVAADIDGDGDGDLVVANPGIDPSFVSPGTGNTLSILRNNGDGTFSVPTTVTTGVGP------SVTAGDFDGDGDIDLAT 221
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A4R8DWB9_9BACT (VCBS repeat protein n=1 Tax=Dinghuibacter silviterrae TaxID=1539049 RepID=A0A4R8DWB9_9BACT) HSP 1 Score: 50.1 bits (118), Expect = 6.030e-5 Identity = 30/84 (35.71%), Postives = 43/84 (51.19%), Query Frame = 1
Query: 31 VATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDILTQEWFTTYRKL 282
+A AD++ DG D+ + ++ G L +F NG G+F R PV P G + IGD++GDG PD+ T W KL
Sbjct: 632 LAIADLNGDGQKDLGIANTEV---GQLTVLF-GNGKGQFGKARSFPVYSKPHTHG---IAIGDFNGDGHPDLATDSWGLNRLKL 708
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A0L0DDP0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DDP0_THETB) HSP 1 Score: 50.1 bits (118), Expect = 6.240e-5 Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 1
Query: 31 VATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVT---IGDYDGDGFPDIL 249
+A AD D DG++D+VVG A ++P L+ +F NG G F + P G+VS+ +GD D D +PD++
Sbjct: 712 LAAADFDHDGDLDLVVGSASVDP---LVLLFNDNGRGGFGSQQQF------HPAGLVSINHIAVGDVDADSWPDVV 778 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig111031.2307.1 >prot_M-pyrifera_M_contig111031.2307.1 ID=prot_M-pyrifera_M_contig111031.2307.1|Name=mRNA_M-pyrifera_M_contig111031.2307.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp MDVGRGFVTSVATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRback to top mRNA from alignment at M-pyrifera_M_contig111031:280..561+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig111031.2307.1 ID=mRNA_M-pyrifera_M_contig111031.2307.1|Name=mRNA_M-pyrifera_M_contig111031.2307.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig111031:280..561+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig111031:280..561+ >mRNA_M-pyrifera_M_contig111031.2307.1 ID=mRNA_M-pyrifera_M_contig111031.2307.1|Name=mRNA_M-pyrifera_M_contig111031.2307.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig111031:280..561+ (Macrocystis pyrifera P11B4 male)back to top |