mRNA_M-pyrifera_M_contig111009.2304.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111009.2304.1
Unique NamemRNA_M-pyrifera_M_contig111009.2304.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111009.2304.1 vs. uniprot
Match: A0A6H5L0A8_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A8_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 3.970e-41
Identity = 76/118 (64.41%), Postives = 96/118 (81.36%), Query Frame = 1 
Query:    1 TSGVQSIGRALKGALARLFKTSDARQVVDSEKSSIINACRARLRLTPLSLRVAQKGKYGATADRKVSVELSESGRKGLLRGLVPRLGAGKVEAEVTYLSNRWRICRVGGVTVAFRKNG 354
            +S  + +GR +KG  +  FKTSD RQVVD+  SS++NACRARLRLTPL+LRVA+KG Y  TA+RKV VE+  + +KGLLR ++P L AGKVEAEVTYLS++WRICR GGVT+AFRK+G
Sbjct:  336 SSSSRLLGRVIKGLFSGFFKTSDRRQVVDTGASSVLNACRARLRLTPLALRVAKKGSYRKTAERKVLVEMPPT-KKGLLRRVLPSLRAGKVEAEVTYLSDKWRICRAGGVTLAFRKSG 452
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BLAST of mRNA_M-pyrifera_M_contig111009.2304.1 vs. uniprot
Match: D8LNG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG7_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.940e-16
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  223 RKGLLRGLVPRLGAGKVEAEVTYLSNRWRICRVGGVTVAFRKNG 354
            +KGLLR ++P L AGKVEAEVTYLS++WR+CR GGVTVAFRKNG
Sbjct:    5 KKGLLRRVLPSLRAGKVEAEVTYLSDKWRVCRAGGVTVAFRKNG 48
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111009.2304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0A8_9PHAE3.970e-4164.41PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
D8LNG7_ECTSI2.940e-1677.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111009contigM-pyrifera_M_contig111009:82..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_003920.1
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.8793519-CDS-M-pyrifera_M_contig111009:81..4411622815621.8793519-CDS-M-pyrifera_M_contig111009:81..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111009 82..441 +
1692277491.7493758-CDS-M-pyrifera_M_contig111009:81..4411692277491.7493758-CDS-M-pyrifera_M_contig111009:81..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111009 82..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111009.2304.1prot_M-pyrifera_M_contig111009.2304.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111009 82..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111009.2304.1

>prot_M-pyrifera_M_contig111009.2304.1 ID=prot_M-pyrifera_M_contig111009.2304.1|Name=mRNA_M-pyrifera_M_contig111009.2304.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
TSGVQSIGRALKGALARLFKTSDARQVVDSEKSSIINACRARLRLTPLSL
RVAQKGKYGATADRKVSVELSESGRKGLLRGLVPRLGAGKVEAEVTYLSN
RWRICRVGGVTVAFRKNGD*
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mRNA from alignment at M-pyrifera_M_contig111009:82..441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111009.2304.1 ID=mRNA_M-pyrifera_M_contig111009.2304.1|Name=mRNA_M-pyrifera_M_contig111009.2304.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig111009:82..441+ (Macrocystis pyrifera P11B4 male)
ACGTCCGGGGTGCAGTCGATCGGACGCGCTCTCAAGGGAGCCCTGGCTCG
CCTCTTCAAGACCTCGGACGCCAGACAGGTCGTCGACTCGGAAAAGTCGA
GCATCATCAACGCGTGCCGCGCCCGCCTGAGGCTGACCCCGCTGTCCCTC
CGGGTGGCGCAGAAGGGCAAGTACGGGGCGACGGCGGACCGCAAGGTGTC
GGTGGAGCTGTCGGAGTCCGGGCGGAAGGGGCTGTTGCGGGGCCTCGTTC
CGAGGCTGGGGGCCGGGAAGGTGGAGGCGGAGGTGACGTACTTGTCGAAC
CGCTGGCGCATCTGCAGGGTCGGGGGCGTGACCGTGGCATTCCGGAAGAA
CGGGGATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111009:82..441+

>mRNA_M-pyrifera_M_contig111009.2304.1 ID=mRNA_M-pyrifera_M_contig111009.2304.1|Name=mRNA_M-pyrifera_M_contig111009.2304.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig111009:82..441+ (Macrocystis pyrifera P11B4 male)
ACGTCCGGGGTGCAGTCGATCGGACGCGCTCTCAAGGGAGCCCTGGCTCG
CCTCTTCAAGACCTCGGACGCCAGACAGGTCGTCGACTCGGAAAAGTCGA
GCATCATCAACGCGTGCCGCGCCCGCCTGAGGCTGACCCCGCTGTCCCTC
CGGGTGGCGCAGAAGGGCAAGTACGGGGCGACGGCGGACCGCAAGGTGTC
GGTGGAGCTGTCGGAGTCCGGGCGGAAGGGGCTGTTGCGGGGCCTCGTTC
CGAGGCTGGGGGCCGGGAAGGTGGAGGCGGAGGTGACGTACTTGTCGAAC
CGCTGGCGCATCTGCAGGGTCGGGGGCGTGACCGTGGCATTCCGGAAGAA
CGGGGATTAGACGTCCGGGGTGCAGTCGATCGGACGCGCTCTCAAGGGAG
CCCTGGCTCGCCTCTTCAAGACCTCGGACGCCAGACAGGTCGTCGACTCG
GAAAAGTCGAGCATCATCAACGCGTGCCGCGCCCGCCTGAGGCTGACCCC
GCTGTCCCTCCGGGTGGCGCAGAAGGGCAAGTACGGGGCGACGGCGGACC
GCAAGGTGTCGGTGGAGCTGTCGGAGTCCGGGCGGAAGGGGCTGTTGCGG
GGCCTCGTTCCGAGGCTGGGGGCCGGGAAGGTGGAGGCGGAGGTGACGTA
CTTGTCGAACCGCTGGCGCATCTGCAGGGTCGGGGGCGTGACCGTGGCAT
TCCGGAAGAACGGGGATTAG
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