mRNA_M-pyrifera_M_contig99990.22996.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99990.22996.1
Unique NamemRNA_M-pyrifera_M_contig99990.22996.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99990.22996.1 vs. uniprot
Match: A0A5A8D072_CAFRO (Fatty acid hydroxylase domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D072_CAFRO)

HSP 1 Score: 197 bits (500), Expect = 2.240e-56
Identity = 104/231 (45.02%), Postives = 136/231 (58.87%), Query Frame = 1
Query:    1 HKAINTIGQYHIHTRFIDRYPAWFEFLFNTPSHHRVHHGRNPYAIDKNYGGIFIIFDRLFGTFAAERDDEELHYGIVPPLESFDPVDNQLSYLERTWKRMFKIGGWQGLKLWFLAPNKVW----NRKEQAWKEIRNPLLGRRVNPWHKPFPSPPTPVVLYTLTHFTVALASYFLQVLDPKFATKPALLLSGT--YLVFALWGVGLLHDGSKYSQAFEVTRNLIIALACIGV 675
            HKA N + Q+ IHTR I + P   EF+FNTPSHHRVHHGRNP+ ID NYGG  II+DRLFGTF  ER+D+ + YGIVPPL+SF+P   QL +L    +RM +    +  K     P ++W    + K   WK+   P LG R NP   P  + PTP+ LYTL  F+VA A++    L P  A+ P +   G   ++  A+W +GLLHD S  + A E  R L+    C  V
Sbjct:  236 HKAFNLLFQFWIHTRHIPKLPWPIEFVFNTPSHHRVHHGRNPWCIDCNYGGTLIIWDRLFGTFCEEREDDAIVYGIVPPLKSFEPWAAQLHHLREIGRRMSRTPAPEAAKHIVAGPGRLWVAGKDGKAGRWKDFPVPELGHRANPVATPLRALPTPLALYTLLSFSVAGAAFLFLALQPSSASGPTMQAIGVAAFVGSAVWTIGLLHDRSPAAAAIEPARALVALAVCAWV 466          
BLAST of mRNA_M-pyrifera_M_contig99990.22996.1 vs. uniprot
Match: A0A5A8CYJ7_CAFRO (Fatty acid hydroxylase domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYJ7_CAFRO)

HSP 1 Score: 195 bits (495), Expect = 1.230e-55
Identity = 103/231 (44.59%), Postives = 135/231 (58.44%), Query Frame = 1
Query:    1 HKAINTIGQYHIHTRFIDRYPAWFEFLFNTPSHHRVHHGRNPYAIDKNYGGIFIIFDRLFGTFAAERDDEELHYGIVPPLESFDPVDNQLSYLERTWKRMFKIGGWQGLKLWFLAPNKVW----NRKEQAWKEIRNPLLGRRVNPWHKPFPSPPTPVVLYTLTHFTVALASYFLQVLDPKFATKPALLLSGT--YLVFALWGVGLLHDGSKYSQAFEVTRNLIIALACIGV 675
            H  +N + Q+ IHTR I + P   EF+FNTPSHHRVHHGRNP+ ID NYGG  II+DRLFGTF  ER+D+ + YGIVPPL+SF+P   QL +L    +RM +    +  K     P ++W    + K   WK+   P LG R NP   P  + PTP+ LYTL  F+VA A+     L P F  +P L+  G   ++  A+W +GLLHD S  + A E  R L+    C  V
Sbjct:  237 HMTVNLLFQFWIHTRHIPKLPWPIEFVFNTPSHHRVHHGRNPWCIDCNYGGTLIIWDRLFGTFCEEREDDAIVYGIVPPLKSFEPWAAQLHHLREIGRRMSRTPAPEAAKHIVAGPGRLWVAGKDGKAGRWKDFPVPELGHRANPVATPLRALPTPLALYTLLSFSVATAAVVSSSLGPAFEERPPLVSIGVAAFVGSAVWTIGLLHDRSPAAAAIEPARALVALAVCAWV 467          
BLAST of mRNA_M-pyrifera_M_contig99990.22996.1 vs. uniprot
Match: A0A819LW40_9BILA (Hypothetical protein n=2 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A819LW40_9BILA)

HSP 1 Score: 164 bits (415), Expect = 1.670e-43
Identity = 87/220 (39.55%), Postives = 126/220 (57.27%), Query Frame = 1
Query:    1 HKAINTIGQYHIHTRFIDRYPAWFEFLFNTPSHHRVHHGRNPYAIDKNYGGIFIIFDRLFGTFAAERDDEELHYGIVPPLESFDPVDNQLSYLERTWKRMFKIGGWQGLKLWFLAPNKVWNRKEQAWKEIRNPLLGRRVNPWHKPFPSPPTPVVLYTLTHFTVALASYFLQVLDPKFATKPALLLSGTYLVFALWGVGLLHDGSKYSQAFEVTRNLIIAL 660
            H  +N + Q+ IHT  I      FE++ NTPSHHRVHHGRNPY IDKNY G+FI++DRLFGTFAAER+DE + YG++ P+++FDP+D QL +LE   K+ FK+ GW+  KL  +     W            P +   V  +H   P+  + + +YT +HF   L  Y   +   K  + PALL     L+F L   G + D  K++  +E  R +++ +
Sbjct:  181 HTQMNLLYQFWIHTDVISNLGP-FEYILNTPSHHRVHHGRNPYCIDKNYAGVFIVWDRLFGTFAAERNDEPIAYGLIHPIKTFDPIDTQLGHLEYICKQFFKVEGWEN-KLSLIWKGPGWQPGLPRLGSTNFPEVKFPVRVYH---PNVSSELSIYTFSHFLYVLMQYSAVLKYSKNYSTPALLFYTIILIFTLKTFGAIFDQKKHALYYERIRLILMLI 395          
BLAST of mRNA_M-pyrifera_M_contig99990.22996.1 vs. uniprot
Match: A0A813N142_ADIRI (Hypothetical protein n=4 Tax=Adineta ricciae TaxID=249248 RepID=A0A813N142_ADIRI)

HSP 1 Score: 157 bits (397), Expect = 3.360e-42
Identity = 86/214 (40.19%), Postives = 119/214 (55.61%), Query Frame = 1
Query:    1 HKAINTIGQYHIHTRFIDRYPAWFEFLFNTPSHHRVHHGRNPYAIDKNYGGIFIIFDRLFGTFAAERDDEELHYGIVPPLESFDPVDNQLSYLERTWKRMFKIGGWQGLKLWFLAPNKVWNRKEQAWKEIRNPLLGRRVNPWHKPFPSPPTPVVLYTLTHFTVALASYFLQVLDPKFATKPALLLSGTYLVFALWGVGLLHDGSKYSQAFEVTR 642
            H  +N + Q+ IHT  I      FE++ NTPSHHRVHHGRNPY IDKNY G+FI++DRLFGTFAAER++E++ YG++ P+ +FDP++ Q  +L+   ++ FKI GWQ  KL  L     W            P +   +  +    P+    +  YT  HF  AL  Y   + D K  +  ALLL    L+F L   G ++D  KY+   E  R
Sbjct:  181 HSQMNLLYQFWIHTDIISNLGP-FEYILNTPSHHRVHHGRNPYCIDKNYAGVFIVWDRLFGTFAAERENEQIAYGLIHPISTFDPIETQFCHLKYICQQFFKIEGWQN-KLAVLWKGPGWQPGLSRLGSDDFPAISYPIQVYD---PNVSIELGSYTFVHFMYALIQYSAVLQDSKDYSPLALLLYSIILLFTLTTFGAIYDQKKYALHLERLR 389          
BLAST of mRNA_M-pyrifera_M_contig99990.22996.1 vs. uniprot
Match: A0A816G0P0_9BILA (Hypothetical protein n=4 Tax=Rotaria TaxID=231623 RepID=A0A816G0P0_9BILA)

HSP 1 Score: 156 bits (395), Expect = 9.240e-42
Identity = 91/246 (36.99%), Postives = 132/246 (53.66%), Query Frame = 1
Query:    1 HKAINTIGQYHIHTRFIDRYPAWFEFLFNTPSHHRVHHGRNPYAIDKNYGGIFIIFDRLFGTFAAERDDEELHYGIVPPLESFDPVDNQLSYLERTWKRMFKIGGWQGLKLWFLAPNKVWNRKEQAWKEIRN------------------PLLGRR--------VNPWHKPFPSPPTPVVLYTLTHFTVALASYFLQVLDPKFATKPALLLSGTYLVFALWGVGLLHDGSKYSQAFEVTRNLIIAL 660
            H  +N + Q+ IHT  I      FE++ NTPSHHRVHHGRNPY IDKNY G+FI++DRLFGTFAAER+DE + YG++ P+++FDP+D QL +LE   K+ FK+ GW+  KL     + +W  K   W+ +                    P LG          V  +H   P+  + + +YT +HF   L  Y   +   K  + PALL     L+F L   G + D  K++  +E  R +++ +
Sbjct:  181 HTQMNLLYQFWIHTDVISNLGP-FEYILNTPSHHRVHHGRNPYCIDKNYAGVFIVWDRLFGTFAAERNDEPIAYGLIHPIKTFDPIDTQLGHLEYICKQFFKVEGWEN-KL-----SLIW--KGPGWQPVXXXXXXXXXXXXXXXXXXGLPRLGSTNFPEVKFPVRVYH---PNVSSELSIYTFSHFLYVLMQYSAVLKYSKNYSTPALLFYTIILIFTLKTFGAIFDQKKHALYYERIRLILMLI 414          
BLAST of mRNA_M-pyrifera_M_contig99990.22996.1 vs. uniprot
Match: A0A814HEU5_9BILA (Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814HEU5_9BILA)

HSP 1 Score: 153 bits (387), Expect = 9.710e-41
Identity = 85/220 (38.64%), Postives = 123/220 (55.91%), Query Frame = 1
Query:    1 HKAINTIGQYHIHTRFIDRYPAWFEFLFNTPSHHRVHHGRNPYAIDKNYGGIFIIFDRLFGTFAAERDDEELHYGIVPPLESFDPVDNQLSYLERTWKRMFKIGGWQGLKLWFLAPNKVWNRKEQAWKEIRNPLLGRRVNPWHKPFPSPPTPVVLYTLTHFTVALASYFLQVLDPKFATKPALLLSGTYLVFALWGVGLLHDGSKYSQAFEVTRNLIIAL 660
            H  +N + Q+ IHT  I      FE++ NTPSHHRVHHGRNPY IDKNY G+FII+DRLFGTFAAER DE++ YG++ P+++FDP++ Q  +L+  +K+  +  GWQ  KL  +     W          + P +   +  +H   P+  T + LYT  HF   L  Y   +   K  +  ALLL    L++ L   G + D  K +  +E  R +++ L
Sbjct:  181 HTQMNLLYQFWIHTEAISNLGP-FEYILNTPSHHRVHHGRNPYCIDKNYAGVFIIWDRLFGTFAAERKDEQIAYGLIHPIKTFDPLETQFVHLKYMFKQFLQRQGWQN-KLSVIWKGPGWAPGLPRLGSDKFPEVKHPIRVYH---PNVSTALSLYTFIHFAYVLIQYSAVLKYSKNYSVVALLLYSIILIYTLQTFGAIFDQKKNALHYERFRLILMLL 395          
BLAST of mRNA_M-pyrifera_M_contig99990.22996.1 vs. uniprot
Match: A0A813N2V6_9BILA (Hypothetical protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A813N2V6_9BILA)

HSP 1 Score: 152 bits (384), Expect = 2.220e-40
Identity = 83/220 (37.73%), Postives = 122/220 (55.45%), Query Frame = 1
Query:    1 HKAINTIGQYHIHTRFIDRYPAWFEFLFNTPSHHRVHHGRNPYAIDKNYGGIFIIFDRLFGTFAAERDDEELHYGIVPPLESFDPVDNQLSYLERTWKRMFKIGGWQGLKLWFLAPNKVWNRKEQAWKEIRNPLLGRRVNPWHKPFPSPPTPVVLYTLTHFTVALASYFLQVLDPKFATKPALLLSGTYLVFALWGVGLLHDGSKYSQAFEVTRNLIIAL 660
            H+ +N + Q+ IHT  I      FE++ NTPSHHRVHHGRNPY IDKNY G+FII+DRLFGTFAAER DEE+ YG++ P+ +FDP++ Q ++ +  +K+ FK  GW   KL  +     W          + P +   +  +H   P+  T + +YT  HF   +  Y   +   K  +  ALLL    L++ L   G + D  K +   E  R +++ +
Sbjct:  171 HEQMNLLYQFWIHTDVISNLGP-FEYILNTPSHHRVHHGRNPYCIDKNYAGVFIIWDRLFGTFAAERKDEEIAYGLIHPINTFDPLETQFNHFKYIFKQFFKTEGWSN-KLSVIWKGPGWQPGLPRLGSDKFPKVKYPIRVYH---PNISTELSVYTFVHFMYVIIQYSAVLKYSKNYSVLALLLYSIMLLYTLQTFGAIFDQKKNALHLERIRLILMLI 385          
BLAST of mRNA_M-pyrifera_M_contig99990.22996.1 vs. uniprot
Match: A0A815TWV3_9BILA (Hypothetical protein (Fragment) n=2 Tax=Adineta steineri TaxID=433720 RepID=A0A815TWV3_9BILA)

HSP 1 Score: 150 bits (380), Expect = 4.680e-40
Identity = 84/222 (37.84%), Postives = 118/222 (53.15%), Query Frame = 1
Query:    1 HKAINTIGQYHIHTRFIDRYPAWFEFLFNTPSHHRVHHGRNPYAIDKNYGGIFIIFDRLFGTFAAERDDEELHYGIVPPLESFDPVDNQLSYLERTWKRMFKIGGWQGLKLWFLAPNKVWNRKEQAWKEIRNPLLGRRVNPWHKPFPSPPTPVVL--YTLTHFTVALASYFLQVLDPKFATKPALLLSGTYLVFALWGVGLLHDGSKYSQAFEVTRNLIIAL 660
            H  +N + Q+ +HT  I +     EF+ NTPSHHRVHHGRNPY IDKNY G+ +I+DRLFGTFAAER DEE+ YG+V    SFDP+  Q  Y +  +++ FK+ GW+  KL  +     W        + + PL+   V      F  P   ++L  YT  HF   L  Y   + D    +   LL    +++F L   G + D  KY+   E  R +++ L
Sbjct:  181 HLQMNLLFQFWVHTEIISKLGP-LEFILNTPSHHRVHHGRNPYCIDKNYAGVLVIWDRLFGTFAAERKDEEIAYGLVYSFASFDPLKTQFGYYQYMFEQFFKLEGWKN-KLSLIWKGPSWQPGLPRLGDHQYPLVKYPVE-----FHDPNISMILSIYTFAHFLFVLGQYSAVLQDLNNCSVLVLLFYSIFMLFTLTTFGAIFDNRKYALRLERIRLVLMLL 395          
BLAST of mRNA_M-pyrifera_M_contig99990.22996.1 vs. uniprot
Match: A0A813NYD7_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A813NYD7_9BILA)

HSP 1 Score: 154 bits (388), Expect = 6.920e-40
Identity = 85/220 (38.64%), Postives = 123/220 (55.91%), Query Frame = 1
Query:    1 HKAINTIGQYHIHTRFIDRYPAWFEFLFNTPSHHRVHHGRNPYAIDKNYGGIFIIFDRLFGTFAAERDDEELHYGIVPPLESFDPVDNQLSYLERTWKRMFKIGGWQGLKLWFLAPNKVWNRKEQAWKEIRNPLLGRRVNPWHKPFPSPPTPVVLYTLTHFTVALASYFLQVLDPKFATKPALLLSGTYLVFALWGVGLLHDGSKYSQAFEVTRNLIIAL 660
            H  +N + Q+ IHT  I      FE++ NTPSHHRVHHGRNPY IDKNY G+FII+DRLFGTFAAER DE++ YG++ P+++FDP++ Q  +L+  +K+  +  GWQ  KL  +     W          + P +   +  +H   P+  T + LYT  HF   L  Y   +   K  +  ALLL    L++ L   G + D  K +  +E  R +++ L
Sbjct:  181 HTQMNLLYQFWIHTEAISNLGP-FEYILNTPSHHRVHHGRNPYCIDKNYAGVFIIWDRLFGTFAAERKDEQIAYGLIHPIKTFDPLETQFVHLKYMFKQFLQRQGWQN-KLSVIWKGPGWAPGLPRLGSDKFPKVKHPIRVYH---PNVSTALSLYTFIHFAYVLIQYSAVLKYSKNYSVVALLLYSIILIYTLQTFGAIFDQKKNALHYERFRLILMLL 395          
BLAST of mRNA_M-pyrifera_M_contig99990.22996.1 vs. uniprot
Match: A0A813BU35_9DINO (AGMO protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BU35_9DINO)

HSP 1 Score: 145 bits (367), Expect = 2.590e-39
Identity = 71/145 (48.97%), Postives = 91/145 (62.76%), Query Frame = 1
Query:    1 HKAINTIGQYHIHTRFIDRYPAWFEFLFNTPSHHRVHHGRNPYAIDKNYGGIFIIFDRLFGTFAAERDDEELHYGIVPPLESFDPVDNQLSYLERTWKRMFKIGGWQGLKLWFLAPNKVW----NRKEQAWKEIRNPLLGRRVNP 423
            H  +N + Q+ IHTR I + P   EF+FNTPSHHRVHHGRNP+ ID NYGG  II+DRLFGTF  ER+D+ + YGIVPPL+SF+P   QL +L    +RM +    +  K     P ++W    + K   WK+   P LG R NP
Sbjct:  133 HLTVNLLFQFWIHTRHIPKLPWPIEFVFNTPSHHRVHHGRNPWCIDCNYGGTLIIWDRLFGTFCEEREDDAIVYGIVPPLKSFEPWAAQLHHLREIGRRMSRTPAPEAAKHIVAGPGRLWVAGKDGKAGRWKDFPVPELGHRANP 277          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99990.22996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D072_CAFRO2.240e-5645.02Fatty acid hydroxylase domain-containing protein n... [more]
A0A5A8CYJ7_CAFRO1.230e-5544.59Fatty acid hydroxylase domain-containing protein n... [more]
A0A819LW40_9BILA1.670e-4339.55Hypothetical protein n=2 Tax=Rotaria magnacalcarat... [more]
A0A813N142_ADIRI3.360e-4240.19Hypothetical protein n=4 Tax=Adineta ricciae TaxID... [more]
A0A816G0P0_9BILA9.240e-4236.99Hypothetical protein n=4 Tax=Rotaria TaxID=231623 ... [more]
A0A814HEU5_9BILA9.710e-4138.64Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 ... [more]
A0A813N2V6_9BILA2.220e-4037.73Hypothetical protein n=3 Tax=Rotaria sordida TaxID... [more]
A0A815TWV3_9BILA4.680e-4037.84Hypothetical protein (Fragment) n=2 Tax=Adineta st... [more]
A0A813NYD7_9BILA6.920e-4038.64Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A813BU35_9DINO2.590e-3948.97AGMO protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99990contigM-pyrifera_M_contig99990:8..682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score131.3
Seed ortholog evalue5.5e-28
Seed eggNOG ortholog984262.SGRA_2392
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Fatty acid hydroxylase
EggNOG OGs1IPCD@117747,4NFWX@976,COG3000@1,COG3000@2
COG Functional cat.I
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size675
Cds size675
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.3980913-CDS-M-pyrifera_M_contig99990:7..6821622816917.3980913-CDS-M-pyrifera_M_contig99990:7..682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99990 8..682 -
1692278254.222517-CDS-M-pyrifera_M_contig99990:7..6821692278254.222517-CDS-M-pyrifera_M_contig99990:7..682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99990 8..682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99990.22996.1prot_M-pyrifera_M_contig99990.22996.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99990 8..682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99990.22996.1

>prot_M-pyrifera_M_contig99990.22996.1 ID=prot_M-pyrifera_M_contig99990.22996.1|Name=mRNA_M-pyrifera_M_contig99990.22996.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=225bp
HKAINTIGQYHIHTRFIDRYPAWFEFLFNTPSHHRVHHGRNPYAIDKNYG
GIFIIFDRLFGTFAAERDDEELHYGIVPPLESFDPVDNQLSYLERTWKRM
FKIGGWQGLKLWFLAPNKVWNRKEQAWKEIRNPLLGRRVNPWHKPFPSPP
TPVVLYTLTHFTVALASYFLQVLDPKFATKPALLLSGTYLVFALWGVGLL
HDGSKYSQAFEVTRNLIIALACIGV
back to top

mRNA from alignment at M-pyrifera_M_contig99990:8..682-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99990.22996.1 ID=mRNA_M-pyrifera_M_contig99990.22996.1|Name=mRNA_M-pyrifera_M_contig99990.22996.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=675bp|location=Sequence derived from alignment at M-pyrifera_M_contig99990:8..682- (Macrocystis pyrifera P11B4 male)
CACAAAGCAATCAACACTATTGGACAGTATCACATCCACACCCGCTTTAT TGATCGATACCCAGCATGGTTCGAATTCTTGTTCAACACCCCTTCCCATC ATCGAGTTCATCATGGACGCAATCCCTATGCCATTGACAAGAACTATGGC GGCATTTTCATCATCTTTGATCGTCTCTTTGGAACATTTGCTGCAGAACG CGATGATGAAGAACTTCACTATGGCATTGTCCCACCACTCGAGTCCTTCG ATCCAGTAGACAACCAGCTTTCCTACCTTGAACGCACTTGGAAGCGTATG TTCAAGATTGGTGGATGGCAAGGATTGAAGCTGTGGTTTCTCGCCCCAAA CAAAGTGTGGAATCGCAAAGAACAAGCGTGGAAAGAAATTCGCAACCCAC TTCTTGGAAGGCGTGTCAACCCTTGGCACAAACCATTCCCATCCCCACCT ACTCCTGTCGTCCTCTACACTCTCACTCACTTCACTGTTGCCCTTGCCTC TTATTTCCTCCAAGTGCTAGACCCCAAATTTGCTACAAAACCAGCGTTGC TCCTCTCTGGGACTTATCTCGTCTTTGCTTTATGGGGTGTGGGCCTTCTT CATGATGGATCTAAGTACTCGCAAGCATTTGAAGTCACACGCAATCTCAT CATTGCACTGGCTTGCATTGGTGTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig99990:8..682-

>mRNA_M-pyrifera_M_contig99990.22996.1 ID=mRNA_M-pyrifera_M_contig99990.22996.1|Name=mRNA_M-pyrifera_M_contig99990.22996.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1350bp|location=Sequence derived from alignment at M-pyrifera_M_contig99990:8..682- (Macrocystis pyrifera P11B4 male)
CACAAAGCAATCAACACTATTGGACAGTATCACATCCACACCCGCTTTAT
TGATCGATACCCAGCATGGTTCGAATTCTTGTTCAACACCCCTTCCCATC
ATCGAGTTCATCATGGACGCAATCCCTATGCCATTGACAAGAACTATGGC
GGCATTTTCATCATCTTTGATCGTCTCTTTGGAACATTTGCTGCAGAACG
CGATGATGAAGAACTTCACTATGGCATTGTCCCACCACTCGAGTCCTTCG
ATCCAGTAGACAACCAGCTTTCCTACCTTGAACGCACTTGGAAGCGTATG
TTCAAGATTGGTGGATGGCAAGGATTGAAGCTGTGGTTTCTCGCCCCAAA
CAAAGTGTGGAATCGCAAAGAACAAGCGTGGAAAGAAATTCGCAACCCAC
TTCTTGGAAGGCGTGTCAACCCTTGGCACAAACCATTCCCATCCCCACCT
ACTCCTGTCGTCCTCTACACTCTCACTCACTTCACTGTTGCCCTTGCCTC
TTATTTCCTCCAAGTGCTAGACCCCAAATTTGCTACAAAACCAGCGTTGC
TCCTCTCTGGGACTTATCTCGTCTTTGCTTTATGGGGTGTGGGCCTTCTT
CATGATGGATCTAAGTACTCGCAAGCATTTGAAGTCACACGCAATCTCAT
CATTGCACTGGCTTGCATTGGTGTCCACAAAGCAATCAACACTATTGGAC
AGTATCACATCCACACCCGCTTTATTGATCGATACCCAGCATGGTTCGAA
TTCTTGTTCAACACCCCTTCCCATCATCGAGTTCATCATGGACGCAATCC
CTATGCCATTGACAAGAACTATGGCGGCATTTTCATCATCTTTGATCGTC
TCTTTGGAACATTTGCTGCAGAACGCGATGATGAAGAACTTCACTATGGC
ATTGTCCCACCACTCGAGTCCTTCGATCCAGTAGACAACCAGCTTTCCTA
CCTTGAACGCACTTGGAAGCGTATGTTCAAGATTGGTGGATGGCAAGGAT
TGAAGCTGTGGTTTCTCGCCCCAAACAAAGTGTGGAATCGCAAAGAACAA
GCGTGGAAAGAAATTCGCAACCCACTTCTTGGAAGGCGTGTCAACCCTTG
GCACAAACCATTCCCATCCCCACCTACTCCTGTCGTCCTCTACACTCTCA
CTCACTTCACTGTTGCCCTTGCCTCTTATTTCCTCCAAGTGCTAGACCCC
AAATTTGCTACAAAACCAGCGTTGCTCCTCTCTGGGACTTATCTCGTCTT
TGCTTTATGGGGTGTGGGCCTTCTTCATGATGGATCTAAGTACTCGCAAG
CATTTGAAGTCACACGCAATCTCATCATTGCACTGGCTTGCATTGGTGTC
back to top