mRNA_M-pyrifera_M_contig99981.22990.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99981.22990.1
Unique NamemRNA_M-pyrifera_M_contig99981.22990.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99981.22990.1 vs. uniprot
Match: A0A517PVJ7_9PLAN (Transaldolase n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517PVJ7_9PLAN)

HSP 1 Score: 220 bits (561), Expect = 2.410e-69
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 1
Query:    1 NCGAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFTSAGVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASLTS 339
            NCGAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFT  GVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASLTS
Sbjct:  247 NCGAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFTREGVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASLTS 359          
BLAST of mRNA_M-pyrifera_M_contig99981.22990.1 vs. uniprot
Match: A0A518AD89_9PLAN (Transaldolase n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AD89_9PLAN)

HSP 1 Score: 187 bits (475), Expect = 2.160e-56
Identity = 93/113 (82.30%), Postives = 104/113 (92.04%), Query Frame = 1
Query:    1 NCGAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFTSAGVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASLTS 339
            N GAQMQRLLWASTG KDPNASD+LYI SLASPFTVNTMPEETLHAFADHGETG+LLADDGG+S ++LGEF SAGVD  A+AAKLQ+DGA+SFVDSW +LL +LA+KSASLTS
Sbjct:  247 NNGAQMQRLLWASTGTKDPNASDILYIKSLASPFTVNTMPEETLHAFADHGETGDLLADDGGDSTAVLGEFASAGVDSGAVAAKLQEDGAQSFVDSWNELLAELAAKSASLTS 359          
BLAST of mRNA_M-pyrifera_M_contig99981.22990.1 vs. uniprot
Match: UPI001E4EB4B1 (hypothetical protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI001E4EB4B1)

HSP 1 Score: 156 bits (395), Expect = 8.630e-46
Identity = 78/111 (70.27%), Postives = 93/111 (83.78%), Query Frame = 1
Query:    1 NCGAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFTSAGVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASL 333
            N GA+ QRLLWASTG+KDPNASDVLYITSLASPFTVNTMPE+TL AFADHG+ G+ L  DGG+  +LL +FT AGVD  ALAA+LQ++GAESFV SW +L+E + +KS SL
Sbjct:  121 NFGARPQRLLWASTGSKDPNASDVLYITSLASPFTVNTMPEQTLKAFADHGDLGDALPADGGDCETLLNDFTQAGVDNQALAARLQEEGAESFVKSWNELMEVITTKSESL 231          
BLAST of mRNA_M-pyrifera_M_contig99981.22990.1 vs. uniprot
Match: A0A518IBJ2_9PLAN (Transaldolase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IBJ2_9PLAN)

HSP 1 Score: 157 bits (398), Expect = 7.640e-45
Identity = 80/113 (70.80%), Postives = 91/113 (80.53%), Query Frame = 1
Query:    1 NCGAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFTSAGVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASLTS 339
            N GA+ QRLLWASTG KDPNASD LYITSLASPFTVNTMPE TL+AFADHGE G  L   GG+S S LGEF +AGVD  ALAAKLQKDGA+SFV SW +L++ + +KS SL +
Sbjct:  247 NFGARPQRLLWASTGVKDPNASDTLYITSLASPFTVNTMPENTLNAFADHGEVGNALPACGGDSESKLGEFETAGVDVQALAAKLQKDGADSFVQSWNELMDVITTKSESLAN 359          
BLAST of mRNA_M-pyrifera_M_contig99981.22990.1 vs. uniprot
Match: A0A517VKY9_9PLAN (Transaldolase n=11 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VKY9_9PLAN)

HSP 1 Score: 156 bits (395), Expect = 2.140e-44
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 1
Query:    1 NCGAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFTSAGVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASL 333
            N GA+ QRLLWASTG+KDPNASDVLYITSLASPFTVNTMPE+TL AF DHGE G+ L  +GG+S +LL EFT A VD  ALAA+LQK+GAESFV SW +L+E + +KS SL
Sbjct:  247 NFGARPQRLLWASTGSKDPNASDVLYITSLASPFTVNTMPEQTLQAFDDHGEVGDTLCVEGGDSEALLDEFTQASVDNQALAARLQKEGAESFVKSWNELMEVITTKSESL 357          
BLAST of mRNA_M-pyrifera_M_contig99981.22990.1 vs. uniprot
Match: A0A517X1V4_9PLAN (Transaldolase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X1V4_9PLAN)

HSP 1 Score: 155 bits (393), Expect = 4.250e-44
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 1
Query:    1 NCGAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFTSAGVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASLTS 339
            N GA+ QRLLWASTG KDPNASD+LYITSLASPFTVNTMPE TL+AFADHGE G  L  DGG+   +L EF  AG+D  ALA KLQ+DGAESFV+SW +L+E + +KS SL +
Sbjct:  247 NSGARPQRLLWASTGMKDPNASDILYITSLASPFTVNTMPENTLNAFADHGEVGPALPADGGDCEDVLNEFEKAGIDVQALATKLQEDGAESFVNSWNELMEVIITKSESLAN 359          
BLAST of mRNA_M-pyrifera_M_contig99981.22990.1 vs. uniprot
Match: UPI001A90C292 (transaldolase n=1 Tax=Methylacidimicrobium sp. B4 TaxID=2796139 RepID=UPI001A90C292)

HSP 1 Score: 152 bits (383), Expect = 1.310e-42
Identity = 75/109 (68.81%), Postives = 90/109 (82.57%), Query Frame = 1
Query:    7 GAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFTSAGVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASL 333
            GA+ QRLLWASTG KDP+ASD+LYI +LA+P T+NTMPEETL AFADHGE GELL  DGG++ +LL EF  AG+D  ALAA+LQ+DGAE+FV SWKDLL  L+ +SA L
Sbjct:  250 GARPQRLLWASTGTKDPHASDILYIRALAAPKTINTMPEETLLAFADHGEIGELLPADGGDASALLAEFHDAGIDVSALAAQLQRDGAEAFVSSWKDLLRSLSERSALL 358          
BLAST of mRNA_M-pyrifera_M_contig99981.22990.1 vs. uniprot
Match: A0A5E6M7I6_9BACT (Transaldolase n=1 Tax=Methylacidimicrobium cyclopophantes TaxID=1041766 RepID=A0A5E6M7I6_9BACT)

HSP 1 Score: 150 bits (380), Expect = 3.660e-42
Identity = 76/109 (69.72%), Postives = 88/109 (80.73%), Query Frame = 1
Query:    7 GAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFTSAGVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASL 333
            GA+ QRLLWASTG KDP+ASD+LYI +LA+P T+NTMPEETL AFADHGE GELL  DGG++  LL EF   GVD  ALAA+LQ+DGA+SFV SWKDLL  LA +SA L
Sbjct:  250 GARPQRLLWASTGTKDPSASDILYIRALAAPDTINTMPEETLLAFADHGEIGELLPADGGDAARLLAEFRDVGVDVAALAAQLQRDGADSFVSSWKDLLRSLAERSALL 358          
BLAST of mRNA_M-pyrifera_M_contig99981.22990.1 vs. uniprot
Match: A0A534U6C4_9DELT (Transaldolase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534U6C4_9DELT)

HSP 1 Score: 150 bits (378), Expect = 7.270e-42
Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 1
Query:    1 NCGAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFTSAGVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASL 333
            N GA+ QRLLWASTG KDP ASDVLYI +LA+PFTVNTMPE TL A ADHGE  E++++DGG+  + L +F  AG+D DALAAKLQ +GA+SFV+SW DL+  +ASKSA+L
Sbjct:  247 NAGARPQRLLWASTGTKDPKASDVLYIKALAAPFTVNTMPEGTLKALADHGELSEIMSNDGGDCEAALAQFAKAGIDIDALAAKLQDEGAKSFVNSWNDLMSVIASKSATL 357          
BLAST of mRNA_M-pyrifera_M_contig99981.22990.1 vs. uniprot
Match: A0A7R8L915_9BACT (Transaldolase n=1 Tax=Methylacidimicrobium sp. AP8 TaxID=2730359 RepID=A0A7R8L915_9BACT)

HSP 1 Score: 147 bits (372), Expect = 5.670e-41
Identity = 72/113 (63.72%), Postives = 90/113 (79.65%), Query Frame = 1
Query:    1 NCGAQMQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGELLADDGGESGSLLGEFTSAGVDCDALAAKLQKDGAESFVDSWKDLLEQLASKSASLTS 339
            + GA+ QRLLWASTG KDP ASD+LY+ +LA+P T+NTMPEETL AFA+HGE GELL  DGG++ ++L EF  AG+D  ALA +LQ+DGA++FV SWKDLL  LA +SA L S
Sbjct:  248 SAGARPQRLLWASTGTKDPQASDILYVRALAAPKTINTMPEETLLAFAEHGEIGELLPADGGDASAVLAEFREAGIDVPALAERLQRDGADAFVASWKDLLRSLAERSALLQS 360          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99981.22990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PVJ7_9PLAN2.410e-6998.23Transaldolase n=6 Tax=Gimesia TaxID=1649453 RepID=... [more]
A0A518AD89_9PLAN2.160e-5682.30Transaldolase n=2 Tax=Gimesia panareensis TaxID=25... [more]
UPI001E4EB4B18.630e-4670.27hypothetical protein n=1 Tax=Gimesia maris TaxID=1... [more]
A0A518IBJ2_9PLAN7.640e-4570.80Transaldolase n=2 Tax=Gimesia TaxID=1649453 RepID=... [more]
A0A517VKY9_9PLAN2.140e-4471.17Transaldolase n=11 Tax=Planctomycetaceae TaxID=126... [more]
A0A517X1V4_9PLAN4.250e-4468.14Transaldolase n=2 Tax=Gimesia aquarii TaxID=252796... [more]
UPI001A90C2921.310e-4268.81transaldolase n=1 Tax=Methylacidimicrobium sp. B4 ... [more]
A0A5E6M7I6_9BACT3.660e-4269.72Transaldolase n=1 Tax=Methylacidimicrobium cyclopo... [more]
A0A534U6C4_9DELT7.270e-4265.77Transaldolase n=1 Tax=Deltaproteobacteria bacteriu... [more]
A0A7R8L915_9BACT5.670e-4163.72Transaldolase n=1 Tax=Methylacidimicrobium sp. AP8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99981contigM-pyrifera_M_contig99981:2..343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score151.8
Seed ortholog evalue1.9e-34
Seed eggNOG ortholog344747.PM8797T_13922
Preferred nametal
KEGG rclassRC00001,RC00439,RC00539,RC00604
KEGG koko:K00033,ko:K00616
KEGG ReactionR01528,R01827,R10221
KEGG Pathwayko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00006,M00007
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
EggNOG OGs2IY2M@203682,COG0176@1,COG0176@2
EC1.1.1.343,1.1.1.44,2.2.1.2
COG Functional cat.H
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size342
Cds size327
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.1477094-UTR-M-pyrifera_M_contig99981:1..161622816917.1477094-UTR-M-pyrifera_M_contig99981:1..16Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99981 2..16 +
1692278254.1096299-UTR-M-pyrifera_M_contig99981:1..161692278254.1096299-UTR-M-pyrifera_M_contig99981:1..16Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99981 2..16 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.1601043-CDS-M-pyrifera_M_contig99981:16..3431622816917.1601043-CDS-M-pyrifera_M_contig99981:16..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99981 17..343 +
1692278254.1296155-CDS-M-pyrifera_M_contig99981:16..3431692278254.1296155-CDS-M-pyrifera_M_contig99981:16..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99981 17..343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99981.22990.1prot_M-pyrifera_M_contig99981.22990.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99981 17..343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99981.22990.1

>prot_M-pyrifera_M_contig99981.22990.1 ID=prot_M-pyrifera_M_contig99981.22990.1|Name=mRNA_M-pyrifera_M_contig99981.22990.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MQRLLWASTGAKDPNASDVLYITSLASPFTVNTMPEETLHAFADHGETGE
LLADDGGESGSLLGEFTSAGVDCDALAAKLQKDGAESFVDSWKDLLEQLA
SKSASLTS*
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mRNA from alignment at M-pyrifera_M_contig99981:2..343+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99981.22990.1 ID=mRNA_M-pyrifera_M_contig99981.22990.1|Name=mRNA_M-pyrifera_M_contig99981.22990.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig99981:2..343+ (Macrocystis pyrifera P11B4 male)
AACTGTGGTGCGCAGATGCAGCGTCTGCTCTGGGCCAGTACCGGGGCGAA AGATCCCAACGCTTCTGACGTTCTTTATATCACATCACTGGCCTCCCCCT TCACCGTGAATACGATGCCCGAAGAAACGTTGCACGCGTTTGCCGATCAC GGCGAGACCGGAGAACTGCTGGCAGACGATGGCGGTGAAAGCGGCTCCCT GTTAGGTGAGTTCACCAGCGCAGGCGTCGACTGCGATGCCCTCGCCGCAA AACTGCAGAAAGATGGCGCCGAGTCGTTCGTCGATTCCTGGAAAGATCTA CTCGAACAGCTGGCCTCCAAGAGTGCTTCGCTGACCAGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99981:2..343+

>mRNA_M-pyrifera_M_contig99981.22990.1 ID=mRNA_M-pyrifera_M_contig99981.22990.1|Name=mRNA_M-pyrifera_M_contig99981.22990.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig99981:2..343+ (Macrocystis pyrifera P11B4 male)
ATGCAGCGTCTGCTCTGGGCCAGTACCGGGGCGAAAGATCCCAACGCTTC
TGACGTTCTTTATATCACATCACTGGCCTCCCCCTTCACCGTGAATACGA
TGCCCGAAGAAACGTTGCACGCGTTTGCCGATCACGGCGAGACCGGAGAA
CTGCTGGCAGACGATGGCGGTGAAAGCGGCTCCCTGTTAGGTGAGTTCAC
CAGCGCAGGCGTCGACTGCGATGCCCTCGCCGCAAAACTGCAGAAAGATG
GCGCCGAGTCGTTCGTCGATTCCTGGAAAGATCTACTCGAACAGCTGGCC
TCCAAGAGTGCTTCGCTGACCAGTTGAATGCAGCGTCTGCTCTGGGCCAG
TACCGGGGCGAAAGATCCCAACGCTTCTGACGTTCTTTATATCACATCAC
TGGCCTCCCCCTTCACCGTGAATACGATGCCCGAAGAAACGTTGCACGCG
TTTGCCGATCACGGCGAGACCGGAGAACTGCTGGCAGACGATGGCGGTGA
AAGCGGCTCCCTGTTAGGTGAGTTCACCAGCGCAGGCGTCGACTGCGATG
CCCTCGCCGCAAAACTGCAGAAAGATGGCGCCGAGTCGTTCGTCGATTCC
TGGAAAGATCTACTCGAACAGCTGGCCTCCAAGAGTGCTTCGCTGACCAG
TTGA
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