mRNA_M-pyrifera_M_contig9997.22987.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9997.22987.1
Unique NamemRNA_M-pyrifera_M_contig9997.22987.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9997.22987.1 vs. uniprot
Match: D7FQQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ3_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 2.400e-64
Identity = 97/117 (82.91%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:    4 TSFSDLFKLGKEVLRTDTFVLHEAQTRGQGQQGRKCLVKCLFVFGLTKVERAQVGEDVRTFRRAKHSCVLALQDVISEPEDRFCYMIYEHMPGGTLTEHLGTGRQFTEGEVRVMVSR 354
            +SFSDLFKLGKEVL+T+TFVLHE QTRG   +GRKCLVKCLFVFGLTK ERAQVGEDVRTFRRAKH  VLALQDVI+EPE+RF Y+IYEHMPGGTLTEHLGTGRQFTEGE + M +R
Sbjct:    8 SSFSDLFKLGKEVLKTETFVLHEGQTRGD--EGRKCLVKCLFVFGLTKAERAQVGEDVRTFRRAKHPAVLALQDVIAEPEERFWYLIYEHMPGGTLTEHLGTGRQFTEGEAKAMAAR 122
[Close]
BLAST of mRNA_M-pyrifera_M_contig9997.22987.1 vs. uniprot
Match: A0A6H5K5V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5V0_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 7.380e-58
Identity = 97/117 (82.91%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:    4 TSFSDLFKLGKEVLRTDTFVLHEAQTRGQGQQGRKCLVKCLFVFGLTKVERAQVGEDVRTFRRAKHSCVLALQDVISEPEDRFCYMIYEHMPGGTLTEHLGTGRQFTEGEVRVMVSR 354
            +SFSDLFKLGKEVL+T+TFVLHE QTRG   +GRKCLVKCLFVFGLTK ERAQVGEDVRTFRRAKH  VLALQDVI+EPE+RF Y+IYEHMPGGTLTEHLGTGRQFTEGE + M +R
Sbjct:    8 SSFSDLFKLGKEVLKTETFVLHEGQTRGD--EGRKCLVKCLFVFGLTKAERAQVGEDVRTFRRAKHPAVLALQDVIAEPEERFWYLIYEHMPGGTLTEHLGTGRQFTEGEAKAMAAR 122
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9997.22987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQQ3_ECTSI2.400e-6482.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5V0_9PHAE7.380e-5882.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9997contigM-pyrifera_M_contig9997:2758..3906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine-threonine/tyrosine-protein kinase catalytic domain
Ec32 orthologEc-01_000110.1
Exons3
Model size357
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9997.22987.1prot_M-pyrifera_M_contig9997.22987.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9997 2758..3906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.0165393-CDS-M-pyrifera_M_contig9997:2757..28571622816917.0165393-CDS-M-pyrifera_M_contig9997:2757..2857Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9997 2758..2857 +
1692278254.0380974-CDS-M-pyrifera_M_contig9997:2757..28571692278254.0380974-CDS-M-pyrifera_M_contig9997:2757..2857Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9997 2758..2857 +
1622816917.0297213-CDS-M-pyrifera_M_contig9997:3099..32421622816917.0297213-CDS-M-pyrifera_M_contig9997:3099..3242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9997 3100..3242 +
1692278254.0604684-CDS-M-pyrifera_M_contig9997:3099..32421692278254.0604684-CDS-M-pyrifera_M_contig9997:3099..3242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9997 3100..3242 +
1622816917.0421522-CDS-M-pyrifera_M_contig9997:3792..39061622816917.0421522-CDS-M-pyrifera_M_contig9997:3792..3906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9997 3793..3906 +
1692278254.071576-CDS-M-pyrifera_M_contig9997:3792..39061692278254.071576-CDS-M-pyrifera_M_contig9997:3792..3906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9997 3793..3906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9997.22987.1

>prot_M-pyrifera_M_contig9997.22987.1 ID=prot_M-pyrifera_M_contig9997.22987.1|Name=mRNA_M-pyrifera_M_contig9997.22987.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MTSFSDLFKLGKEVLRTDTFVLHEAQTRGQGQQGRKCLVKCLFVFGLTKV
ERAQVGEDVRTFRRAKHSCVLALQDVISEPEDRFCYMIYEHMPGGTLTEH
LGTGRQFTEGEVRVMVSR*
back to top

mRNA from alignment at M-pyrifera_M_contig9997:2758..3906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9997.22987.1 ID=mRNA_M-pyrifera_M_contig9997.22987.1|Name=mRNA_M-pyrifera_M_contig9997.22987.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at M-pyrifera_M_contig9997:2758..3906+ (Macrocystis pyrifera P11B4 male)
ATGACTTCGTTCTCGGATCTGTTCAAGCTTGGCAAGGAAGTGCTGAGGAC
AGATACCTTCGTTTTGCATGAGGCCCAGACACGCGGACAAGGACAACAAG
GTGTGCTTTCGCGCGCGACTGGCTCTCTACACATGACATCACGTTTTCCT
CCCTGATGGCGGCCCATGCATTGGACACGGCGAGCTGCGTGAGGCACGCT
CCAGATGCCTTGGTTCAGAGTCGAGACAGCACGATGCTTCCGTTACTTGT
GTTGGCGAGAGCTTGATCTAATGCCATCGTCAAACTTGAACGTATTGTCT
CTTTTGTCTTTTTCCTTGTGATCTGCAACTTTCGTTCGGCAGGCCGCAAA
TGCTTGGTGAAATGTCTTTTCGTGTTCGGTCTCACGAAGGTGGAGCGAGC
CCAAGTCGGCGAGGATGTGCGCACGTTCCGCAGGGCCAAGCACTCTTGTG
TATTGGCGCTGCAAGACGTGATTTCCGAGCCGGAGGTAAGAAGCGGACGA
ATCTCTCCTCCTTGCATCGTGCTATTAATAATCACCGGTACCGCGGTACC
CCTCCCCTGACGCTTTTTGAAATGCTGTGCTTGCCCACCTTTATTCGAGG
TAGCCGCATGTGTAAAAATATCATCTTTGTCTTCGGGAGCGGGGCGCTGC
CGACAGCAGGAAGAACAGATGGCTGCTGGTACCGGTATGTATCGTTGCAC
GTATGAGAAAATGTGCACTAATTATCCTGGCAGGATGGGTGTACAACAGC
AGCAGTTTACCTACAGCACCGAGCAATGACAGGATGGAGAGCAAGATAGG
ACATGGTGCATTGCTTTGTTTTCCGGTAGGTGGCGTCCTTGCATACTATC
AATACTGCTGTCTGCAGTTTGTGGAAACATAACAATTCTATCTGATATTT
TACTCGCAAGTTTGAGTTTGGCTGTTCGTTTTGGTGGTGGGACCCTATCA
TCCCGACAGACGCGAAAAAGACAAACGCAAAACGAAGTTAACATTTTCAT
GGTTCGCAAACGCCGGTCGATGGCGCGATGTCTAGGACCGGTTCTGCTAC
ATGATCTACGAGCACATGCCTGGAGGCACTCTGACGGAACACTTGGGGAC
GGGGCGGCAGTTCACAGAGGGAGAAGTCAGGGTCATGGTCAGCCGGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9997:2758..3906+

>mRNA_M-pyrifera_M_contig9997.22987.1 ID=mRNA_M-pyrifera_M_contig9997.22987.1|Name=mRNA_M-pyrifera_M_contig9997.22987.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig9997:2758..3906+ (Macrocystis pyrifera P11B4 male)
ATGACTTCGTTCTCGGATCTGTTCAAGCTTGGCAAGGAAGTGCTGAGGAC
AGATACCTTCGTTTTGCATGAGGCCCAGACACGCGGACAAGGACAACAAG
ATGACTTCGTTCTCGGATCTGTTCAAGCTTGGCAAGGAAGTGCTGAGGAC
AGATACCTTCGTTTTGCATGAGGCCCAGACACGCGGACAAGGACAACAAG
GCCGCAAATGCTTGGTGAAATGTCTTTTCGTGTTCGGTCTCACGAAGGTG
GAGCGAGCCCAAGTCGGCGAGGATGTGCGCACGTTCCGCAGGGCCAAGCA
CTCTTGTGTATTGGCGCTGCAAGACGTGATTTCCGAGCCGGAGGCCGCAA
ATGCTTGGTGAAATGTCTTTTCGTGTTCGGTCTCACGAAGGTGGAGCGAG
CCCAAGTCGGCGAGGATGTGCGCACGTTCCGCAGGGCCAAGCACTCTTGT
GTATTGGCGCTGCAAGACGTGATTTCCGAGCCGGAGGACCGGTTCTGCTA
CATGATCTACGAGCACATGCCTGGAGGCACTCTGACGGAACACTTGGGGA
CGGGGCGGCAGTTCACAGAGGGAGAAGTCAGGGTCATGGTCAGCCGGTGA
GACCGGTTCTGCTACATGATCTACGAGCACATGCCTGGAGGCACTCTGAC
GGAACACTTGGGGACGGGGCGGCAGTTCACAGAGGGAGAAGTCAGGGTCA
TGGTCAGCCGGTGA
back to top