mRNA_M-pyrifera_M_contig99962.22986.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig99962.22986.1 vs. uniprot
Match: UPI0007AE5146 (helix-turn-helix domain-containing protein n=2 Tax=Pseudovibrio TaxID=258255 RepID=UPI0007AE5146) HSP 1 Score: 243 bits (619), Expect = 3.500e-78 Identity = 123/204 (60.29%), Postives = 148/204 (72.55%), Query Frame = 1 Query: 1 FTNKELACAANITAQTASAHLKHLQSAGLTMSLRSGRHIYHRIANTEVAGVLEAVAGLSPTDHLHRNTNGGRTGTEMFRARSCYDHIAGRLGVLLTERLIALNVLQLANGSISVGGKTGGFFEEFGLAIPCASGPGKPIVKLCLDWTERRHHISGPLATALMQHSLSARWLKRQRDSRVLRITPLGYDVFGRVFGLSREEIDAT 612 FTNKELACAA I+AQTAS HLK LQ+AGLT S+RSGR +YHRIA+ +VA VLEA+AGLSPTDHLHR N RARSCY+HIAGRLGVL+T RL+AL +L++ +++ FF + + +P S KP VKLCLDWTERRHHISGPLATALM+ +L WL+R SR L IT LGY++F R FG+ R ID T Sbjct: 32 FTNKELACAAKISAQTASVHLKQLQAAGLTSSIRSGRCVYHRIASEDVACVLEALAGLSPTDHLHRAKNQKLPEANTLRARSCYNHIAGRLGVLITNRLVALGILRIQGEVVAIDAAGEAFFNKLEIDVPNLSTSKKPTVKLCLDWTERRHHISGPLATALMEKALKMNWLERHAGSRALAITTLGYEIFERDFGIVRNLIDGT 235
BLAST of mRNA_M-pyrifera_M_contig99962.22986.1 vs. uniprot
Match: A0A327LWY6_9RHOB (Transcriptional regulator n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A327LWY6_9RHOB) HSP 1 Score: 240 bits (613), Expect = 2.670e-77 Identity = 125/202 (61.88%), Postives = 150/202 (74.26%), Query Frame = 1 Query: 1 FTNKELACAANITAQTASAHLKHLQSAGLTMSLRSGRHIYHRIANTEVAGVLEAVAGLSPTDHLHRNTNGGRTGTEMFRARSCYDHIAGRLGVLLTERLIALNVLQLANGSISVGGKTGGFFEEFGLAIPCASGPGKPIVKLCLDWTERRHHISGPLATALMQHSLSARWLKRQRDSRVLRITPLGYDVFGRVFGLSREEID 606 FTNKELACAAN++ QTASAHLK L+ AGLT SLR+GRH+YHRIAN EVA +LE +A LSPTDHL R G+ GT+ +ARSCY+HIAGRLGVL+T+RLIALNVL + + +I G + F +E G+ P S GKP K CLDWTERRHHISGPLATA+MQ L A WL+R+ SR L IT G DV FGL++ +ID Sbjct: 32 FTNKELACAANVSPQTASAHLKQLEQAGLTASLRNGRHVYHRIANAEVAAILEGLAQLSPTDHLSRP---GQIGTDTRQARSCYNHIAGRLGVLMTDRLIALNVLMVRDDTICAGPRYHAFLDEIGIEAPLGS-LGKPPAKFCLDWTERRHHISGPLATAIMQKFLEAHWLERRTGSRALNITAEGLDVLECQFGLTQVDID 229
BLAST of mRNA_M-pyrifera_M_contig99962.22986.1 vs. uniprot
Match: A0A166ASN6_9HYPH (Helix-turn-helix domain protein n=4 Tax=Pseudovibrio TaxID=258255 RepID=A0A166ASN6_9HYPH) HSP 1 Score: 240 bits (612), Expect = 4.310e-77 Identity = 120/202 (59.41%), Postives = 148/202 (73.27%), Query Frame = 1 Query: 1 FTNKELACAANITAQTASAHLKHLQSAGLTMSLRSGRHIYHRIANTEVAGVLEAVAGLSPTDHLHRNTNGGRTGTEMFRARSCYDHIAGRLGVLLTERLIALNVLQLANGSISVGGKTGGFFEEFGLAIPCASGPGKPIVKLCLDWTERRHHISGPLATALMQHSLSARWLKRQRDSRVLRITPLGYDVFGRVFGLSREEID 606 FTNKELACAAN+TAQTASAHLK L++AGLT SLRSGR++YHRI++ EVA +LE +AGLSPTDHLHR N + + RARSCY+HIAGRLGVL+T++LI L L S SV + FF + + + KP VKLCLDWTERRHHIS PLATALM SL +WL+R + SR L+IT LGY+ F R FG+S + ++ Sbjct: 32 FTNKELACAANVTAQTASAHLKQLEAAGLTASLRSGRNVYHRISSAEVASILETLAGLSPTDHLHRAKNRNKPEVDALRARSCYNHIAGRLGVLITDQLITKGALLLQGDSASVTPEGVAFFHAIDINVLNINNTKKPAVKLCLDWTERRHHISAPLATALMDRSLEKKWLERCKASRALKITALGYEAFDRDFGISHDSLE 233
BLAST of mRNA_M-pyrifera_M_contig99962.22986.1 vs. uniprot
Match: UPI001EF5C190 (ArsR family transcriptional regulator n=1 Tax=Ruegeria sp. Ofav3-42 TaxID=2917759 RepID=UPI001EF5C190) HSP 1 Score: 239 bits (610), Expect = 1.020e-76 Identity = 120/204 (58.82%), Postives = 153/204 (75.00%), Query Frame = 1 Query: 1 FTNKELACAANITAQTASAHLKHLQSAGLTMSLRSGRHIYHRIANTEVAGVLEAVAGLSPTDHLHRNTNGGRTGTEMFRARSCYDHIAGRLGVLLTERLIALNVLQLANGSISVGGKTGGFFEEFGLAIPCASGPGKPIVKLCLDWTERRHHISGPLATALMQHSLSARWLKRQRDSRVLRITPLGYDVFGRVFGLSREEIDAT 612 FTNKELACAAN++ QTAS HLK L+ AGLT SLRSGRH+YHR+A+ +VA VLE +A LSPTDHL R G+ T+ RARSCY+HIAGRLGVL++ERL+AL+VL L +++ G + F ++ G+ +P S GKP KLCLDWTERRHHISGPLATA MQ +L+ +WL+R+ SR L +T GYD R FGL+++ +D T Sbjct: 41 FTNKELACAANVSPQTASVHLKQLELAGLTSSLRSGRHVYHRVASADVAEVLERLATLSPTDHLSRP---GQIATDTQRARSCYNHIAGRLGVLMSERLVALDVLTLRENAMTFGSRYQAFVDDIGIEVPPVSS-GKPPAKLCLDWTERRHHISGPLATAFMQKALAVKWLQRRTGSRALTVTVDGYDALERWFGLTKKTVDGT 240
BLAST of mRNA_M-pyrifera_M_contig99962.22986.1 vs. uniprot
Match: A0A7V1BEJ4_9RHOB (ArsR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A7V1BEJ4_9RHOB) HSP 1 Score: 239 bits (609), Expect = 1.080e-76 Identity = 123/202 (60.89%), Postives = 149/202 (73.76%), Query Frame = 1 Query: 1 FTNKELACAANITAQTASAHLKHLQSAGLTMSLRSGRHIYHRIANTEVAGVLEAVAGLSPTDHLHRNTNGGRTGTEMFRARSCYDHIAGRLGVLLTERLIALNVLQLANGSISVGGKTGGFFEEFGLAIPCASGPGKPIVKLCLDWTERRHHISGPLATALMQHSLSARWLKRQRDSRVLRITPLGYDVFGRVFGLSREEID 606 FTNKELACAAN++ QTASAHLK L+ AGLT SLRSGRH+YHRIAN +VA LE +A LSPTDHL R G+ G +M RARSCY+HIAGRLGVL+ +RLIAL+VL + + S G + F ++ + +P G GKP KLCLDWTERRHHISGPLATA+MQ L A WL+R+ SR L +T G+D R FGL+R +ID Sbjct: 32 FTNKELACAANVSPQTASAHLKQLERAGLTASLRSGRHVYHRIANADVAATLEGLAQLSPTDHLSRP---GQPGADMPRARSCYNHIAGRLGVLMADRLIALDVLNIQGDAFSSGPRYQAFLDDIDIEVPLG-GTGKPPAKLCLDWTERRHHISGPLATAIMQKFLEANWLERRTGSRALIVTADGFDALERWFGLNRLDID 229
BLAST of mRNA_M-pyrifera_M_contig99962.22986.1 vs. uniprot
Match: A0A165MRV1_9HYPH (Helix-turn-helix domain protein n=1 Tax=Pseudovibrio sp. W74 TaxID=1735584 RepID=A0A165MRV1_9HYPH) HSP 1 Score: 233 bits (595), Expect = 1.640e-74 Identity = 123/206 (59.71%), Postives = 151/206 (73.30%), Query Frame = 1 Query: 1 FTNKELACAANITAQTASAHLKHLQSAGLTMSLRSGRHIYHRIANTEVAGVLEAVAGLSPTDHLHRNTNGGRTGTEMFRARSCYDHIAGRLGVLLTERLIALNVLQLAN--GSISVGGKTGGFFEEFGLAIPCASGPGKPIVKLCLDWTERRHHISGPLATALMQHSLSARWLKRQRDSRVLRITPLGYDVFGRVFGLSREEIDAT 612 FTNKELACAA I+AQTAS HLK LQ+AGLT +RSGR IYHRIA+ +VAGVLE +AGLSPTDHL+R N + RARSCY+HIAGRLGVL+T RL+AL +L++ +SV G+ FF + + +P S KP VKLCLDWTERR HISGPLATALM+ +L WL+R+ SR L IT LGY++F R FG+ R+ I+ T Sbjct: 32 FTNKELACAAEISAQTASVHLKQLQAAGLTSCIRSGRCIYHRIASEDVAGVLEVLAGLSPTDHLYRARNRKLPEANIMRARSCYNHIAGRLGVLITNRLVALGLLRIQGEVAVLSVAGEA--FFRKLEVDVPNQSTSQKPAVKLCLDWTERRQHISGPLATALMEKALKINWLERRTGSRELSITALGYEIFERDFGIPRDLINRT 235
BLAST of mRNA_M-pyrifera_M_contig99962.22986.1 vs. uniprot
Match: UPI001E3624C1 (ArsR family transcriptional regulator n=1 Tax=Seohaeicola saemankumensis TaxID=481181 RepID=UPI001E3624C1) HSP 1 Score: 232 bits (592), Expect = 2.690e-74 Identity = 122/202 (60.40%), Postives = 146/202 (72.28%), Query Frame = 1 Query: 1 FTNKELACAANITAQTASAHLKHLQSAGLTMSLRSGRHIYHRIANTEVAGVLEAVAGLSPTDHLHRNTNGGRTGTEMFRARSCYDHIAGRLGVLLTERLIALNVLQLANGSISVGGKTGGFFEEFGLAIPCASGPGKPIVKLCLDWTERRHHISGPLATALMQHSLSARWLKRQRDSRVLRITPLGYDVFGRVFGLSREEID 606 FTNKELACAA I+ QTASAHLK L+ AGLT SLRSGRH+YHRIAN +VA +LE +A LSPTDHL R GR ARSCY+HIAGRLGVL+T+RLIA NVL + N +I G + F +E + +P G GKP+ LCLDWTERRHHISGPLATA+MQ L A+WL+R+ SR L +T G+D R F L R++ID Sbjct: 19 FTNKELACAACISPQTASAHLKQLEGAGLTASLRSGRHVYHRIANADVAAILEGLAQLSPTDHLSRP---GRPDANTSCARSCYNHIAGRLGVLMTDRLIARNVLTVRNDAIRAGPRYQTFLDEIRIEVPLG-GTGKPLAMLCLDWTERRHHISGPLATAIMQKFLEAKWLERRTGSRALIVTEDGFDALERRFCLHRQDID 216
BLAST of mRNA_M-pyrifera_M_contig99962.22986.1 vs. uniprot
Match: UPI001671C87B (helix-turn-helix domain-containing protein n=1 Tax=Pseudovibrio japonicus TaxID=366534 RepID=UPI001671C87B) HSP 1 Score: 232 bits (591), Expect = 6.630e-74 Identity = 121/204 (59.31%), Postives = 147/204 (72.06%), Query Frame = 1 Query: 1 FTNKELACAANITAQTASAHLKHLQSAGLTMSLRSGRHIYHRIANTEVAGVLEAVAGLSPTDHLHRNTNGGRTGTEMFRARSCYDHIAGRLGVLLTERLIALNVLQLANGSISVGGKTGGFFEEFGLAIPCASGPGKPIVKLCLDWTERRHHISGPLATALMQHSLSARWLKRQRDSRVLRITPLGYDVFGRVFGLSREEIDAT 612 +TNKELA AA I+AQTAS HLK LQ+AGLT S+RSGR +YHRIA+ +VA VLEA+A LSPTDHL+R N RARSCY+HIAGRLGVL+T RLIAL VL++ + +G FF + + +P S KP +KLCLDWTERR HISGPLATALM+ +L WL+R+ SR L IT LGY+VF FG++RE ID T Sbjct: 32 YTNKELASAAEISAQTASVHLKQLQAAGLTSSIRSGRCVYHRIASEDVASVLEALASLSPTDHLYRAKNRYLPEANTMRARSCYNHIAGRLGVLITNRLIALGVLRIQGEVVEIGAMGEAFFSKLEIDVPNLSISLKPPLKLCLDWTERRQHISGPLATALMEKTLKMNWLERRTGSRALLITELGYEVFEHDFGIARELIDGT 235
BLAST of mRNA_M-pyrifera_M_contig99962.22986.1 vs. uniprot
Match: A0A849G0Y1_9RHOB (Winged helix-turn-helix transcriptional regulator n=2 Tax=Silicimonas sp. TaxID=2058390 RepID=A0A849G0Y1_9RHOB) HSP 1 Score: 231 bits (590), Expect = 2.300e-73 Identity = 121/202 (59.90%), Postives = 148/202 (73.27%), Query Frame = 1 Query: 1 FTNKELACAANITAQTASAHLKHLQSAGLTMSLRSGRHIYHRIANTEVAGVLEAVAGLSPTDHLHRNTNGGRTGTEMFRARSCYDHIAGRLGVLLTERLIALNVLQLANGSISVGGKTGGFFEEFGLAIPCASGPGKPIVKLCLDWTERRHHISGPLATALMQHSLSARWLKRQRDSRVLRITPLGYDVFGRVFGLSREEID 606 FTNKELA AA I+ QT SAHLK L+ AGLT SLRSGRHIYHR+A+ +VA VLE +A LSPTDHL+R GRT T+ RARSCY+HIAGRLGVL+TERL+AL VL L N ++S G F + G+ P S G P +LCLDWTERRHHISGPLATA++Q SL+A WL+R+ SR L +T G+D R FGL++ ++ Sbjct: 64 FTNKELASAAEISPQTTSAHLKQLELAGLTASLRSGRHIYHRVASADVARVLEGLATLSPTDHLYRR---GRTATDTHRARSCYNHIAGRLGVLMTERLVALGVLSLRNEAMSSGPCYQDFLNDIGIETPHVSS-GMPPARLCLDWTERRHHISGPLATAILQKSLTANWLERRTGSRALTVTADGFDALERWFGLNKATVN 261
BLAST of mRNA_M-pyrifera_M_contig99962.22986.1 vs. uniprot
Match: UPI0013A667D2 (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Yoonia maritima TaxID=1435347 RepID=UPI0013A667D2) HSP 1 Score: 228 bits (581), Expect = 1.920e-72 Identity = 121/202 (59.90%), Postives = 146/202 (72.28%), Query Frame = 1 Query: 1 FTNKELACAANITAQTASAHLKHLQSAGLTMSLRSGRHIYHRIANTEVAGVLEAVAGLSPTDHLHRNTNGGRTGTEMFRARSCYDHIAGRLGVLLTERLIALNVLQLANGSISVGGKTGGFFEEFGLAIPCASGPGKPIVKLCLDWTERRHHISGPLATALMQHSLSARWLKRQRDSRVLRITPLGYDVFGRVFGLSREEID 606 FTNKELACAA I+ QTASAHLK L+ AGLT SLRSGRH+YHRIAN +VA LE +A LSPTDHL R GR + RARSCY+HIAG+LGVL+T+ L+A +VL + + +I G F ++ G+ IP G GKP KLCLDWTERRHHISGPLATA+MQ L A WL+R+ SR L +T G+D R FGL+R +ID Sbjct: 32 FTNKELACAACISPQTASAHLKQLEGAGLTASLRSGRHVYHRIANADVAATLEGLAQLSPTDHLSRP---GRHDADTPRARSCYNHIAGKLGVLMTDHLVARDVLTVRDDAIIAGPHYQVFLDDIGIEIPFG-GMGKPPAKLCLDWTERRHHISGPLATAIMQKFLEANWLERRTGSRALIVTDDGFDALERWFGLNRLDID 229 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99962.22986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig99962.22986.1 >prot_M-pyrifera_M_contig99962.22986.1 ID=prot_M-pyrifera_M_contig99962.22986.1|Name=mRNA_M-pyrifera_M_contig99962.22986.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=206bp FTNKELACAANITAQTASAHLKHLQSAGLTMSLRSGRHIYHRIANTEVAGback to top mRNA from alignment at M-pyrifera_M_contig99962:2..619+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig99962.22986.1 ID=mRNA_M-pyrifera_M_contig99962.22986.1|Name=mRNA_M-pyrifera_M_contig99962.22986.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig99962:2..619+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig99962:2..619+ >mRNA_M-pyrifera_M_contig99962.22986.1 ID=mRNA_M-pyrifera_M_contig99962.22986.1|Name=mRNA_M-pyrifera_M_contig99962.22986.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1236bp|location=Sequence derived from alignment at M-pyrifera_M_contig99962:2..619+ (Macrocystis pyrifera P11B4 male)back to top |