mRNA_M-pyrifera_M_contig9993.22981.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9993.22981.1
Unique NamemRNA_M-pyrifera_M_contig9993.22981.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9993.22981.1 vs. uniprot
Match: D7FXV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV3_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 7.580e-88
Identity = 120/150 (80.00%), Postives = 135/150 (90.00%), Query Frame = 1 
Query:    1 MCDNCDIYRHESGGSKTIEYSDHERAKVTWRKPRLLGNEELRPFLTPDEAAFKIQQLHRNWRARETARDAMRAAWSRVYSPQEGRYFFFYKGRSPLILPITAKWVQPCRSIGGIWVWRPLLSEHVAALRIQNMWRNFLGRRGLKALVRQV 450
            MCD+CD YRH+SGG+KTIEY+DHERAKVTW KPRLLG EELRPFLT +EAAFK+QQLHRNW+ARE ARDAMR AW+RVYSPQE R+FFFYKG SPL+LP TA W QPCRSIGGIWVWRP+LSEHVAA+RIQN+WRNF GRR L+  VRQ+
Sbjct:    1 MCDSCDAYRHQSGGNKTIEYTDHERAKVTWSKPRLLGKEELRPFLTVNEAAFKMQQLHRNWKAREIARDAMRVAWNRVYSPQERRFFFFYKGESPLVLPTTASWTQPCRSIGGIWVWRPVLSEHVAAMRIQNLWRNFAGRRDLRERVRQM 150
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BLAST of mRNA_M-pyrifera_M_contig9993.22981.1 vs. uniprot
Match: A0A835YL39_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL39_9STRA)

HSP 1 Score: 176 bits (445), Expect = 4.250e-49
Identity = 80/142 (56.34%), Postives = 104/142 (73.24%), Query Frame = 1 
Query:   25 RHESGGSKTIEYSDHERAKVTWRKPRLLGNEELRPFLTPDEAAFKIQQLHRNWRARETARDAMRAAWSRVYSPQEGRYFFFYKGRSPLILPITAKWVQPCRSIGGIWVWRPLLSEHVAALRIQNMWRNFLGRRGLKALVRQV 450
            R+ S   +   Y      +V+W KPR+LG+EELRPFLT DEAAFK+QQLHRNWRARE AR+ +R  W R+YSP E R+++ YKG SPL+LP  A+W QPCR +G  W+WRPLL+E +AALR+Q  WR   GRR ++ +VR+V
Sbjct:  108 RYYSSQRRRHYYCFTRTGRVSWHKPRVLGSEELRPFLTRDEAAFKMQQLHRNWRARERARNLLRRYWDRIYSPAEKRFYYHYKGDSPLVLPQRARWSQPCRMMGREWIWRPLLTESMAALRVQTFWRAASGRREIRDIVRRV 249
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9993.22981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXV3_ECTSI7.580e-8880.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YL39_9STRA4.250e-4956.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9993contigM-pyrifera_M_contig9993:219..5704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size450
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9993.22981.1prot_M-pyrifera_M_contig9993.22981.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9993 219..5704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.6949005-CDS-M-pyrifera_M_contig9993:218..3421622816916.6949005-CDS-M-pyrifera_M_contig9993:218..342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9993 219..342 -
1692278253.8426645-CDS-M-pyrifera_M_contig9993:218..3421692278253.8426645-CDS-M-pyrifera_M_contig9993:218..342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9993 219..342 -
1622816916.7082765-CDS-M-pyrifera_M_contig9993:1685..17651622816916.7082765-CDS-M-pyrifera_M_contig9993:1685..1765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9993 1686..1765 -
1692278253.8535116-CDS-M-pyrifera_M_contig9993:1685..17651692278253.8535116-CDS-M-pyrifera_M_contig9993:1685..1765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9993 1686..1765 -
1622816916.7209575-CDS-M-pyrifera_M_contig9993:3354..35191622816916.7209575-CDS-M-pyrifera_M_contig9993:3354..3519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9993 3355..3519 -
1692278253.863579-CDS-M-pyrifera_M_contig9993:3354..35191692278253.863579-CDS-M-pyrifera_M_contig9993:3354..3519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9993 3355..3519 -
1622816916.7328658-CDS-M-pyrifera_M_contig9993:5623..57041622816916.7328658-CDS-M-pyrifera_M_contig9993:5623..5704Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9993 5624..5704 -
1692278253.8738468-CDS-M-pyrifera_M_contig9993:5623..57041692278253.8738468-CDS-M-pyrifera_M_contig9993:5623..5704Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9993 5624..5704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9993.22981.1

>prot_M-pyrifera_M_contig9993.22981.1 ID=prot_M-pyrifera_M_contig9993.22981.1|Name=mRNA_M-pyrifera_M_contig9993.22981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MCDNCDIYRHESGGSKTIEYSDHERAKVTWRKPRLLGNEELRPFLTPDEA
AFKIQQLHRNWRARETARDAMRAAWSRVYSPQEGRYFFFYKGRSPLILPI
TAKWVQPCRSIGGIWVWRPLLSEHVAALRIQNMWRNFLGRRGLKALVRQV
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mRNA from alignment at M-pyrifera_M_contig9993:219..5704-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9993.22981.1 ID=mRNA_M-pyrifera_M_contig9993.22981.1|Name=mRNA_M-pyrifera_M_contig9993.22981.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5486bp|location=Sequence derived from alignment at M-pyrifera_M_contig9993:219..5704- (Macrocystis pyrifera P11B4 male)
ATGTGCGACAACTGCGACATCTATAGGCACGAGAGCGGGGGCAGCAAAAC
CATCGAGTACTCGGATCACGAACGCGCGAAGGTGACAACATCTTCGACAG
AGTAAATTAAAAATTTACCGTAAATAGGGTTGAGTTGACACAGGGGGGAT
GACCGTCTTTCAGCGCAGCTCACTGTATCGACAACGGTATTGAGGGTGCC
ACAGTCGAACAATATTCTATATTCGGAACGCTCTCGACCAGATGTTTCCG
AAAAATCACCTCTTTCGGTATTTTAGCAACCTTCCTTCCCGTCCTTGAAG
AATCGAACGCGGTTGGAATACGCGTTGCACCTCCGTGCGGACTCGATCCT
CCTAGCGGAAAATATGGTAGGCGATTGGTTTAGTCTAACCTTTCACCAGT
AGCCTAACACACTACAGCAATAATACCTTCGGAGGGGTACGCAGCGATGA
TACTTATTGGTGTTGCAAGGGGAGCTACTGGTTAATTTGACAACACGATA
CGTAATCTAAACGTGGAAGAGTGGTGAGCTTAACCTTTATTTTTACCAAT
CCACCGGAGGATTAAAAAAAAACAAAAAACGAAGAAGCCCACAAGCTATG
CGAATTTACACTCGATGTCCTAGACGGTGCAGTATTTCAACAACCAACCC
TACCCCAGCCTTGAATTTATCATTGTTTCGTGCTCTCGGCTCCGCGGCGT
TCACAGGTCTCCACTCTAGACATTCCTTCGGCGGCGTTCAGGGTAAAGGG
GTTCATGCGATTCGTGTATCACCGAAAGCGCATGCGGGAAGAGGTCCGGC
GGCAGTACTCTCGCTTTTTCGACGGGCGTTCCAAGAGGCATTTCTACAGC
TTCCATAGAACGGAGGAGGTACATACCTGGTATATATAGTGTGTACGAAT
ATATACATATATTTGTGAAAAAAATTAAGCTGTGTGATGAGATCAAACTT
TCCCTCATAACTTTGTACATTGAAGATTGGTGTGATACTAGTGATACCAT
TAATAGTGATACTACAGTAGTGTTGTTGGTGATACTTTCTTCGAAGTGAT
CTACGAGGTGTGTAGGTATATATAGTACGAAGCGTGGGACTATCATACAT
GTAAGGCACCTGAAATATCATATGCAGTGTTTGGGTGAAACAACTACCAA
CCAACAGGTATACATAACTGGTTCGGTTTTGTATTTTGGAGACGAAAATA
TGTACCTGGTGTATATATATCACCAGGTATACATTAGGGGTGGGTATGGG
GTGAAATTAATCAATTGATGTCGTGAATTACTGTAGTATACATTCATTGC
TTATTATTGCCTCGACGCGGCTTAGAACTCAAGGGTAGAAGGTAAAGGAG
CGTGTAACGAGAAGGAAGGGGCAAGAGCAGCAATCGACGTAGACAGAGGT
TAAGCAGGAAGTGGGTACAGAAGAGGGAGTTAGACTTCGTGCATAGGTGT
CCTTTTTTTTTTTCTCTGAGTTTTTTCTGGGAATGTTTATGAGTGATCAA
TGTTGAAGCTACTGCAGTCGAATAGGCTATTGTAGTCCAATAGTCTATTG
TAGGCCAATAGGTTTCCTCTTTTCTTTTGGCTTTTCTCTTGGTTCCCTTC
TTTCGGGGGATGTTCACGAGTGACCAGCGTTGAAGCTCATGCTACCTGAA
CATTGAGGTCGGACGGTAAGCGCAACAATATTAAGGCCGTTGTTCGCGTA
CAGGCAAAAAAGTATCTCCATGCCGGGGTGCGTACAGGCTTCCATTATGT
TGATTGGCCTGTCTACTCATTTTTGCATCATCATTGATTCCGAGAGCTGT
ACGTCGCCGATTTCCGGTCACCCGGCGTCGAACGAAGAGAGCGAACTTGG
GCTAGCGTGTGAGGCTTGTTTCGTCGTACGCTGTCTCGAGATGGTCGCTG
TTGCCGGGCTGCTGTGGTTTTGGTGGCAGTGCGGCGGGATTCCATTTTTT
AACGCACACGGCCTGCGGCATGTATCAGGCAGCCTTGCCGCATGTACCTG
TCCACTAGGGCTAATGACAACAAAATTGTGATAAGGCTCTTTTTTCCCGT
GGTTTTCTTCTTTTGGAGTGATTATGGGTGATCAACGTTGAAGCTAATGC
TGTTTGCACATTAAGGTCGGATGGCAAGAGTAATACTATTACAAATATCC
AAAACAAAAACAATGATACATAAAACATAAAACAGGTGACCTGGAGGAAA
CCTCGGCTGCTGGGGAACGAAGAACTTCGGCCGTTTCTCACTCCAGACGA
AGCAGCATTCAAGATACAGCAGCTGCATCGCAACTGGAGGGCTAGAGAAA
CGGCGAGGGACGCCATGCGCGCCGCCTGGTCAAGGGTCTATTCCCCACAG
GTACGACGAGGCCGTGTCTTGGCGCACTTTATCTGTCTGTCTGTCTGTCT
GTCAATATGTTATGCTTGCTTGTCTGTGTGTCTGTGTGTCTGTCTGTCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGTTTGTCTGTTTGGCTGTCTACCTGTCTGCTTGTCTGTCTGTCTGTCTA
TCAGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGTCTGTCTGGTTGTCTGTCTGTTTGACTGTCTGCCTGTTTGTCTATCTG
TCTATCTGTCTGTCTGTCTGTCTGTCTGTTTGTTTGACTGTCTTCCTGTC
TGTCTGCCTGTCTGTCTTCCTGTCTGCCTGTCTGTCGTCCTGTCTGCCTG
TCTGTCTGTATGTCTGTCTAGGCATTTGTCTGCATCTCCATATATCTGCT
TCACACGTGTGCGTCTCTTGCCTGCCTGTCTGCCTGCTCGCACTGGGTTT
CCACCTATCAGCCACTATCAACAATACTACGTCGTGGAGCATCATCTGCC
GGCAACTTACATATGTTCTAATGTTATCGCAGGCGCGAAAAACCGAGAAG
TGTACATAGCCAACATACAACGTTCCATGGCGACGGCAGTGTACATAATG
CAACTTTAGACCGGTGGTTTGTACGGTAGGGTACGTGCCTAAACCTGACG
AGACTCCCCGCCTGAGGAGCCCCATAGCTCACCCAACAGGGCCATCTACA
GTCCAGAAAAAACGCAATCTAAGCCCAACATTCAATCCCACACGGGCTAC
TGTAGGTATCTACGGAAAATTATTGTGAAATATATATCGGGTCCAAATAC
ATCAGGGTACTTTGAGAGTTGCCATGGTCGAGGAGCCCCAGTCAGTGATA
AACATTTGGGGTCAAAAGTGCAACTAAATCCAGCCGAAGCATGCCTATTT
ATGTGGGCAGTTTCAATACATCGGACAGATCAGATGGATCAGATCAGATC
CCCACTTTTTATGGTTTAGATCGTTCAGGGAAGATATATTCCTACCGTAG
TGTGTATGATTTACAGCAGCTCGTGCTGCCGGTTGAAAGCCGTGTAATCT
ACAGTGATCCGTTGGTGTCACCTTGGTATCATCTGTAACACACAGATCCC
GCAGATGATCTAGATCGTGATCTGTTTGGTGTGGGTTCAGCTTCCAATGC
ACCGAACGGACGAAAGAAAGCTTTCACCATATCGTATACTGTAACACGCA
AGACAACACGCCCCCCCCGGAACGAATTTCGAGGCCGGTTGTCTCTGAGC
GAGGGAGGGGGGGCACACACAACAAAAAATAGGTAGGTTTGCAAAGATCC
ACTCGGCGTTCGCATCTTCCCCATTATTTGAGAGAACCGGCTTGAAAACT
CATCTCAGGGGTAATGTTCTCCTCCGTGTTATGCCACATATGTACCCAGA
CCCCACAGCACCCCTGCCAAAGTAACGCACGGGTGTTACGTCACTTGTCC
CACGTTTTTGCTCGCGGTTTACGCCCTACCGCCGTGGATCGGGCGGGCCT
TGTCGCGCGCTCATCTGACCGCGGTTATTGTTTTGACAGGAGGGGAGATA
CTTCTTCTTTTACAAGGGGAGGAGCCCGCTGATACTACCGATCACGGCGA
AATGGGTGCAGCCGTGCCGGTCAGTTGACTTGCTAACTTGTCGTCGTTGT
TCTTGTACGCTGAAATGGCGTCGGTTGCGGCGACACAAATATTAGCCGTA
GCAGCGAATGGGGACGGTTGATGGTTGGGGGCAGCTGTGCTCCCGTCGGC
GCCAAGTGCGAAGGTGCTGAATGAGGGCCACAGGAGTGTCGATGATGAAC
TTGCTTTGGTACGGCAGGGGGGCTTTGTCTCCTCCTTGTCACTGCCGTGT
CTGGCCACTCGGGGTGAGCGGCTCTGTGCCTCGCTCAAAATTGGAGGGTT
GTTTTGAACATTATTCGACAAAATGGTAGACACATGCTGTGTACGAGACG
GATAAAACAAACCCTAACCTTGACCCTGACCCCAAGCCAATCAGAGCAAC
CCTAACCTGGGGAATGAGCCAATCAGAGCAACCCTAACCTTGAGAATGAG
CCAATCAGAGCAACCCTAACCCTAACCCTTGGTCAATCAGAGCAATCCTA
ACCCTGACCCTGAGCCAATCATGCCAAATCTCGAATGAGTGGCAAGCTTT
ACTGCAAAAGTGGACTCGGAAATATGTTCTTTCGCGCAGGCAGCAGCGTA
AGAAACGATCCCTCTGCTGCTCGTCCATGAAGGATAAACCACTGAGCTCG
TACTCGGTCAGCGCTGACTGACTGAGTGGCTCAGCGGCTAGTCCTTCATA
AACGAACAAAAAAGCACCTTTTGAGCTCTCGCTCGCGGCGGTGCATATCG
CGAAGCCGAAGAGCACGAAAGCCCTTATAGATGCACATAAGTAGTGTACG
TAGCCAATCCCGGCCAAGTGGGTCTGTGCGACTTAACATAGAGGACGTAA
AGGTTGACGTCCTGCCGCAGCACCAGTCTGATGGAAAGGGCACGCTTCTT
CTTCTTGCTCATCTCCTCGAGAGGTTCGATGAGAGCAGAAGGGGAACAAA
AATGATTGGGTGGGACTGTGTTCCACCAAGACCAAGCCCACCTAACCCCT
GCAAAGTAGCGCCTACAGACATGTAAGATTTTTCGGAGGACGTCATTTTC
CTACAAGAGATATAATTTCCCTGTCTTTACGTAGCTAGTAACGCCCATTC
ATTGCCTTCGCCCTTCGTTTCTCCCTCCCTCCTGTTCGTAACTCAGGTCA
TCCGGGGTCGCATGGCAGGGTCTCCTCCTCCCTAACCACGACGGGTCGTG
TGTCTTTGGCATTTTTCATCGCGAGAATACCTCAGGCTTTTCTTACCTCG
TCGACTGTCGCCGAATTACGCCCACCCACTTTTAGGTGCGCTCGACATTT
GCTTACTGATTTGCACGACTTCTGGCTTTCGCCACCGTCGATCGGCGTCG
ACCACGGAACAGGTCAATCGGAGGAATTTGGGTGTGGCGTCCGTTGCTTT
CGGAACACGTCGCGGCCCTCAGAATCCAGAACATGTGGAGAAATTTCCTC
GGGCGCAGGGGGTTGAAAGCTCTCGTGCGACAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9993:219..5704-

>mRNA_M-pyrifera_M_contig9993.22981.1 ID=mRNA_M-pyrifera_M_contig9993.22981.1|Name=mRNA_M-pyrifera_M_contig9993.22981.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig9993:219..5704- (Macrocystis pyrifera P11B4 male)
ATGTGCGACAACTGCGACATCTATAGGCACGAGAGCGGGGGCAGCAAAAC
CATCGAGTACTCGGATCACGAACGCGCGAAGATGTGCGACAACTGCGACA
TCTATAGGCACGAGAGCGGGGGCAGCAAAACCATCGAGTACTCGGATCAC
GAACGCGCGAAGGTGACCTGGAGGAAACCTCGGCTGCTGGGGAACGAAGA
ACTTCGGCCGTTTCTCACTCCAGACGAAGCAGCATTCAAGATACAGCAGC
TGCATCGCAACTGGAGGGCTAGAGAAACGGCGAGGGACGCCATGCGCGCC
GCCTGGTCAAGGGTCTATTCCCCACAGGTGACCTGGAGGAAACCTCGGCT
GCTGGGGAACGAAGAACTTCGGCCGTTTCTCACTCCAGACGAAGCAGCAT
TCAAGATACAGCAGCTGCATCGCAACTGGAGGGCTAGAGAAACGGCGAGG
GACGCCATGCGCGCCGCCTGGTCAAGGGTCTATTCCCCACAGGAGGGGAG
ATACTTCTTCTTTTACAAGGGGAGGAGCCCGCTGATACTACCGATCACGG
CGAAATGGGTGCAGCCGTGCCGGAGGGGAGATACTTCTTCTTTTACAAGG
GGAGGAGCCCGCTGATACTACCGATCACGGCGAAATGGGTGCAGCCGTGC
CGGTCAATCGGAGGAATTTGGGTGTGGCGTCCGTTGCTTTCGGAACACGT
CGCGGCCCTCAGAATCCAGAACATGTGGAGAAATTTCCTCGGGCGCAGGG
GGTTGAAAGCTCTCGTGCGACAGGTGGTCAATCGGAGGAATTTGGGTGTG
GCGTCCGTTGCTTTCGGAACACGTCGCGGCCCTCAGAATCCAGAACATGT
GGAGAAATTTCCTCGGGCGCAGGGGGTTGAAAGCTCTCGTGCGACAGGTG
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