mRNA_M-pyrifera_M_contig110938.2296.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110938.2296.1
Unique NamemRNA_M-pyrifera_M_contig110938.2296.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110938.2296.1 vs. uniprot
Match: A0A2D6SVR4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SVR4_9PLAN)

HSP 1 Score: 109 bits (273), Expect = 2.410e-24
Identity = 70/194 (36.08%), Postives = 107/194 (55.15%), Query Frame = 1
Query:    1 LAKYPRDRWISSLTKFATGDFPRSHLSEEEQADVRRDALLALGRIGHPQLVSLLAEALEADAASVRETAFGLLIAQQDERSNQLAKEAALARIETEFPSHQILVLLERLPDVRAVPLLVKHLETSDQNRSNLIKTLARVGGAGIDRTLAQTFSSLKAREQAAVLNELTELKSDQAVALAGEAIRSEEAILFNAA 582
            LA+YPR  W  +L  F          S +  A VR +A+ AL R+GHP+++++L  AL +  A +R  AF  L+A+ D +S +LA E  L  ++T  P   +  LL R  D RAVPLL+KH   +  +RS LI  L ++G   +     + +  L   E+A+VL  L +L+S     LAGEA+ S+ + + +AA
Sbjct:  460 LAQYPRPLWSQALYDF----------SRDADAKVRLEAIRALVRVGHPEILTVLDTALNSGDAGLRTEAFNTLVARTDAKSEELALEFTLKALKTSPPDSPMTNLLTRTKDPRAVPLLLKHFSKNSGSRSTLINLLQQIGDESVAEVFIKEYPKLSEYEKASVLKGLFQLQSPAFKKLAGEALLSKNSSMVSAA 643          
BLAST of mRNA_M-pyrifera_M_contig110938.2296.1 vs. uniprot
Match: A0A3E0Q699_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q699_9BACT)

HSP 1 Score: 101 bits (252), Expect = 1.560e-21
Identity = 71/195 (36.41%), Postives = 110/195 (56.41%), Query Frame = 1
Query:    1 LAKYPRDRWISSLTK-FATGDFPRSHLSEEEQADVRRDALLALGRIGHPQLVSLLAEALEADAASVRETAFGLLIAQQDERSNQLAKEAALARIETEFPSHQILVLLERLPDVRAVPLLVKHLETSDQNRSNLIKTLARVGGAGIDRTLAQTFSSLKAREQAAVLNELTELKSDQAVALAGEAIRSEEAILFNAA 582
            LA++PR  W   L + F +GD             ++  AL AL RIGHP+L  +LA+ +E++   +R+ AF  L  + D  S++LA E AL  +E + P+  +  LL R  + RAVPLL+KHL+++D N S LI+ L  VGGA +   L   +   + +++  VL EL +++S  A  LA +A ++ E  L  AA
Sbjct:  462 LAQFPRPIWSDLLYQYFHSGDH-----------QLQLAALRALSRIGHPRLFEVLADGMESEHEDLRQEAFIRLSQRTDAPSDKLATEYALQLLEEKPPTGHVESLLTRTREPRAVPLLLKHLDSADTNHSALIRLLVVVGGADVIDELTDRYPDFEDQQKQEVLRELIKVRSPAARPLALQAFKANETALLPAA 645          
BLAST of mRNA_M-pyrifera_M_contig110938.2296.1 vs. uniprot
Match: A0A3B8KVU2_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8KVU2_9PLAN)

HSP 1 Score: 100 bits (250), Expect = 2.800e-21
Identity = 66/194 (34.02%), Postives = 104/194 (53.61%), Query Frame = 1
Query:    1 LAKYPRDRWISSLTKFATGDFPRSHLSEEEQADVRRDALLALGRIGHPQLVSLLAEALEADAASVRETAFGLLIAQQDERSNQLAKEAALARIETEFPSHQILVLLERLPDVRAVPLLVKHLETSDQNRSNLIKTLARVGGAGIDRTLAQTFSSLKAREQAAVLNELTELKSDQAVALAGEAIRSEEAILFNAA 582
            +A+YPR  +  ++ +FAT             A +   A+ AL +IGHP+L+++L EA+     + R+TA  +L+ + D +S QLA E  L R+ET  P + +  LL +  D RA+P+L+KHL +S  NRS L+ TL  +G   I   L + +    + E+A VL  +          LA +A+ S  + L NAA
Sbjct:  270 MAQYPRPAFADAIHRFAT--------DAGADATLSLVAMKALAQIGHPELMTVLDEAVRGSHPARRDTALTILVTRPDRKSQQLAMEHVLKRLETAPPDNTMNSLLLKTRDPRAIPMLLKHLTSSTGNRSTLVSTLVTIGDQDIAAKLLEHYPKFSSTERATVLRAIGNSDIKTFRKLAPDALASNNSSLINAA 455          
BLAST of mRNA_M-pyrifera_M_contig110938.2296.1 vs. uniprot
Match: A0A3D2TZL2_9PLAN (Uncharacterized protein (Fragment) n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D2TZL2_9PLAN)

HSP 1 Score: 100 bits (250), Expect = 2.910e-21
Identity = 66/194 (34.02%), Postives = 104/194 (53.61%), Query Frame = 1
Query:    1 LAKYPRDRWISSLTKFATGDFPRSHLSEEEQADVRRDALLALGRIGHPQLVSLLAEALEADAASVRETAFGLLIAQQDERSNQLAKEAALARIETEFPSHQILVLLERLPDVRAVPLLVKHLETSDQNRSNLIKTLARVGGAGIDRTLAQTFSSLKAREQAAVLNELTELKSDQAVALAGEAIRSEEAILFNAA 582
            +A+YPR  +  ++ +FAT             A +   A+ AL +IGHP+L+++L EA+     + R+TA  +L+ + D +S QLA E  L R+ET  P + +  LL +  D RA+P+L+KHL +S  NRS L+ TL  +G   I   L + +    + E+A VL  +          LA +A+ S  + L NAA
Sbjct:  484 MAQYPRPAFADAIHRFAT--------DAGADATLSLVAMKALAQIGHPELMTVLDEAVRGSHPARRDTALTILVTRPDRKSQQLAMEHVLKRLETAPPDNTMNSLLLKTRDPRAIPMLLKHLTSSTGNRSTLVSTLVTIGDQDIAAKLLEHYPKFSSTERATVLRAIGNSDIKTFRKLAPDALASNNSSLINAA 669          
BLAST of mRNA_M-pyrifera_M_contig110938.2296.1 vs. uniprot
Match: A0A518CST5_9PLAN (TPR repeat-containing protein YrrB n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CST5_9PLAN)

HSP 1 Score: 97.1 bits (240), Expect = 6.280e-20
Identity = 64/194 (32.99%), Postives = 103/194 (53.09%), Query Frame = 1
Query:    1 LAKYPRDRWISSLTKFATGDFPRSHLSEEEQADVRRDALLALGRIGHPQLVSLLAEALEADAASVRETAFGLLIAQQDERSNQLAKEAALARIETEFPSHQILVLLERLPDVRAVPLLVKHLETSDQNRSNLIKTLARVGGAGIDRTLAQTFSSLKAREQAAVLNELTELKSDQAVALAGEAIRSEEAILFNAA 582
            L++ PR  W  ++ +F         L+EE   D   +AL AL RIGHPQL+ +L ++L+     ++  AF +L  + D  S  LA    L  ++T+ P+ ++  LL +     A+P L+ +LE  +  R N+++TLA++G   +   L + +  L  +EQA  L  L EL S  AV L+ +A+ S E  L  AA
Sbjct:  475 LSQNPRPIWSETIYQF---------LTEETDNDYHSEALQALNRIGHPQLLDVLEKSLQNRDEEIQRIAFLILANRNDPESETLALNYTLQHLQTDPPTPEMHELLIQTKSQEAIPHLLPYLEKRNPERRNILRTLAQIGDQNVASKLTEIYPKLDTQEQAIALASLWELSSPAAVELSKQALASNEHSLMRAA 659          
BLAST of mRNA_M-pyrifera_M_contig110938.2296.1 vs. uniprot
Match: UPI00029A76A8 (hypothetical protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029A76A8)

HSP 1 Score: 95.5 bits (236), Expect = 2.150e-19
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 1
Query:    1 LAKYPRDRWISSLTKFATGDFPRSHLSEEEQADVRRDALLALGRIGHPQLVSLLAEALEADAASVRETAFGLLIAQQDERSNQLAKEAALARIETEFPSHQILVLLERLPDVRAVPLLVKHLETSDQNRSNLIKTLARVGGAGIDRTLAQTFSSLKAREQAAVLNELTELKSDQAVALAGEAIRSEEAILFNAA 582
            LAKYPR  W  +L +F T        +    AD   D++ AL ++GHPQLV +L  +L++    +R+ AF  L  + DERS +LA   AL  +E   P   ++ LL R  D RA+P+L+K L+ S+ +R N+I  L ++G   +   L Q +SSL   E+  +L  L   +  +   L GEA+ + +  L  AA
Sbjct:  467 LAKYPRSIWSDTLYEFVT--------NSSGGADA--DSIRALIQVGHPQLVDVLERSLKSAEKPIRDQAFQELSKRSDERSEKLAVGYALKALEAGPPDDAVVQLLSRTKDPRAIPMLLKQLD-SNHDRVNVINLLMQLGDQEVADRLVQKYSSLNNNEKVQILQGLKAFRHPKFRELCGEALLTNDNQLVTAA 649          
BLAST of mRNA_M-pyrifera_M_contig110938.2296.1 vs. uniprot
Match: A0A2E8FHG1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8FHG1_9PLAN)

HSP 1 Score: 90.5 bits (223), Expect = 1.180e-17
Identity = 65/194 (33.51%), Postives = 100/194 (51.55%), Query Frame = 1
Query:    1 LAKYPRDRWISSLTKFATGDFPRSHLSEEEQADVRRDALLALGRIGHPQLVSLLAEALEADAASVRETAFGLLIAQQDERSNQLAKEAALARIETEFPSHQILVLLERLPDVRAVPLLVKHLETSDQNRSNLIKTLARVGGAGIDRTLAQTFSSLKAREQAAVLNELTELKSDQAVALAGEAIRSEEAILFNAA 582
            LA++PR  +  ++  FA    P           V   AL AL  IGHPQL+ +LA AL++     R+ A  +L  + D  S +LA +  L R+E   P + +  LL R  D RA+P+L+KH+  S  NRS LI TL ++G   +   L + +  L  +++A VLN +  +       LA +A+ S  + L +AA
Sbjct:  473 LARHPRPAFADAIFDFANDPDP----------GVGAAALQALSGIGHPQLLPILAVALQSSHTVRRDAALAILSKRTDRASEKLALDHVLERLENTPPDNIMNSLLIRTRDPRAIPMLLKHVVNSPANRSILINTLVQIGDQDVAAKLIEHYPKLPNKDRAVVLNAVARIDITVFRKLAADALASNYSSLVSAA 656          
BLAST of mRNA_M-pyrifera_M_contig110938.2296.1 vs. uniprot
Match: A0A3N5QXK5_9PLAN (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3N5QXK5_9PLAN)

HSP 1 Score: 54.3 bits (129), Expect = 2.960e-5
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  217 LIAQQDERSNQLAKEAALARIETEFPSHQILVLLERLPDVRAVPLLVKHLETSDQNRSNLIKTLARVGGAGIDRTLAQTFSSLKAREQAAVLNELTELKSDQAVALAGEAIRS 555
            L+ + D  S  +A    LA I+ + P   +LVLL R+ D RA+PLL++    + QN+  +I+TLA +G     + L + + +L+  E+  V+  L  L   +   LAG+A+ S
Sbjct:  198 LVNRPDAESEGIALTFTLAHIQEKEPLPTMLVLLNRVKDRRALPLLLERFPMA-QNKQPMIQTLALIGDQETSQFLVEKYPALQNHEKGEVIRALVRLDKPKFRELAGQALLS 309          
BLAST of mRNA_M-pyrifera_M_contig110938.2296.1 vs. uniprot
Match: A0A3N5RX39_9PLAN (HEAT repeat domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3N5RX39_9PLAN)

HSP 1 Score: 54.3 bits (129), Expect = 3.100e-5
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  217 LIAQQDERSNQLAKEAALARIETEFPSHQILVLLERLPDVRAVPLLVKHLETSDQNRSNLIKTLARVGGAGIDRTLAQTFSSLKAREQAAVLNELTELKSDQAVALAGEAIRS 555
            L+ + D  S  +A    LA I+ + P   +LVLL R+ D RA+PLL++    + QN+  +I+TLA +G     + L + + +L+  E+  V+  L  L   +   LAG+A+ S
Sbjct:  385 LVNRPDAESEGIALTFTLAHIQEKEPLPTMLVLLNRVKDRRALPLLLERFPMA-QNKQPMIQTLALIGDQETSQFLVEKYPALQNHEKGEVIRALVRLDKPKFRELAGQALLS 496          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110938.2296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2D6SVR4_9PLAN2.410e-2436.08Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3E0Q699_9BACT1.560e-2136.41Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3B8KVU2_9PLAN2.800e-2134.02Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A3D2TZL2_9PLAN2.910e-2134.02Uncharacterized protein (Fragment) n=2 Tax=Plancto... [more]
A0A518CST5_9PLAN6.280e-2032.99TPR repeat-containing protein YrrB n=1 Tax=Polysty... [more]
UPI00029A76A82.150e-1935.05hypothetical protein n=1 Tax=Schlesneria paludicol... [more]
A0A2E8FHG1_9PLAN1.180e-1733.51Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3N5QXK5_9PLAN2.960e-532.74Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A3N5RX39_9PLAN3.100e-532.74HEAT repeat domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110938contigM-pyrifera_M_contig110938:6..587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score95.1
Seed ortholog evalue3.8e-17
Seed eggNOG ortholog1123242.JH636435_gene1560
Preferred namecpeY
KEGG koko:K05385
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs2J1RH@203682,COG0457@1,COG0457@2,COG1413@1,COG1413@2
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size582
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.422781-CDS-M-pyrifera_M_contig110938:5..5871622815621.422781-CDS-M-pyrifera_M_contig110938:5..587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110938 6..587 +
1692277491.4744387-CDS-M-pyrifera_M_contig110938:5..5871692277491.4744387-CDS-M-pyrifera_M_contig110938:5..587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110938 6..587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110938.2296.1prot_M-pyrifera_M_contig110938.2296.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110938 6..587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110938.2296.1

>prot_M-pyrifera_M_contig110938.2296.1 ID=prot_M-pyrifera_M_contig110938.2296.1|Name=mRNA_M-pyrifera_M_contig110938.2296.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
LAKYPRDRWISSLTKFATGDFPRSHLSEEEQADVRRDALLALGRIGHPQL
VSLLAEALEADAASVRETAFGLLIAQQDERSNQLAKEAALARIETEFPSH
QILVLLERLPDVRAVPLLVKHLETSDQNRSNLIKTLARVGGAGIDRTLAQ
TFSSLKAREQAAVLNELTELKSDQAVALAGEAIRSEEAILFNAA
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mRNA from alignment at M-pyrifera_M_contig110938:6..587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110938.2296.1 ID=mRNA_M-pyrifera_M_contig110938.2296.1|Name=mRNA_M-pyrifera_M_contig110938.2296.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig110938:6..587+ (Macrocystis pyrifera P11B4 male)
CTGGCAAAGTATCCGCGAGACCGATGGATCAGCTCTCTGACGAAGTTCGC GACAGGAGACTTTCCCCGAAGTCATCTTTCAGAAGAGGAACAGGCAGATG TCCGTCGTGACGCCCTGTTGGCGCTCGGTCGGATTGGGCATCCGCAGTTA GTCAGCCTGTTGGCAGAGGCACTTGAAGCGGACGCCGCATCGGTTCGTGA GACGGCGTTTGGTCTGCTGATCGCCCAACAGGATGAGCGTAGCAATCAAT TGGCCAAGGAAGCTGCACTGGCACGAATCGAAACGGAATTTCCATCACAT CAGATTCTGGTGCTTTTGGAACGGCTTCCAGATGTACGTGCGGTTCCTCT GTTGGTCAAACATTTGGAAACTTCCGACCAGAACCGCAGTAACCTCATCA AGACGTTGGCGAGGGTTGGAGGAGCCGGCATTGATCGGACGTTGGCCCAG ACGTTCTCGTCGCTGAAAGCACGTGAGCAAGCGGCCGTGCTCAACGAATT GACAGAACTAAAATCGGATCAAGCGGTCGCCCTGGCGGGAGAGGCGATTC GAAGCGAAGAGGCGATTCTCTTCAACGCAGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110938:6..587+

>mRNA_M-pyrifera_M_contig110938.2296.1 ID=mRNA_M-pyrifera_M_contig110938.2296.1|Name=mRNA_M-pyrifera_M_contig110938.2296.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig110938:6..587+ (Macrocystis pyrifera P11B4 male)
CTGGCAAAGTATCCGCGAGACCGATGGATCAGCTCTCTGACGAAGTTCGC
GACAGGAGACTTTCCCCGAAGTCATCTTTCAGAAGAGGAACAGGCAGATG
TCCGTCGTGACGCCCTGTTGGCGCTCGGTCGGATTGGGCATCCGCAGTTA
GTCAGCCTGTTGGCAGAGGCACTTGAAGCGGACGCCGCATCGGTTCGTGA
GACGGCGTTTGGTCTGCTGATCGCCCAACAGGATGAGCGTAGCAATCAAT
TGGCCAAGGAAGCTGCACTGGCACGAATCGAAACGGAATTTCCATCACAT
CAGATTCTGGTGCTTTTGGAACGGCTTCCAGATGTACGTGCGGTTCCTCT
GTTGGTCAAACATTTGGAAACTTCCGACCAGAACCGCAGTAACCTCATCA
AGACGTTGGCGAGGGTTGGAGGAGCCGGCATTGATCGGACGTTGGCCCAG
ACGTTCTCGTCGCTGAAAGCACGTGAGCAAGCGGCCGTGCTCAACGAATT
GACAGAACTAAAATCGGATCAAGCGGTCGCCCTGGCGGGAGAGGCGATTC
GAAGCGAAGAGGCGATTCTCTTCAACGCAGCCCTGGCAAAGTATCCGCGA
GACCGATGGATCAGCTCTCTGACGAAGTTCGCGACAGGAGACTTTCCCCG
AAGTCATCTTTCAGAAGAGGAACAGGCAGATGTCCGTCGTGACGCCCTGT
TGGCGCTCGGTCGGATTGGGCATCCGCAGTTAGTCAGCCTGTTGGCAGAG
GCACTTGAAGCGGACGCCGCATCGGTTCGTGAGACGGCGTTTGGTCTGCT
GATCGCCCAACAGGATGAGCGTAGCAATCAATTGGCCAAGGAAGCTGCAC
TGGCACGAATCGAAACGGAATTTCCATCACATCAGATTCTGGTGCTTTTG
GAACGGCTTCCAGATGTACGTGCGGTTCCTCTGTTGGTCAAACATTTGGA
AACTTCCGACCAGAACCGCAGTAACCTCATCAAGACGTTGGCGAGGGTTG
GAGGAGCCGGCATTGATCGGACGTTGGCCCAGACGTTCTCGTCGCTGAAA
GCACGTGAGCAAGCGGCCGTGCTCAACGAATTGACAGAACTAAAATCGGA
TCAAGCGGTCGCCCTGGCGGGAGAGGCGATTCGAAGCGAAGAGGCGATTC
TCTTCAACGCAGCC
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