prot_M-pyrifera_M_contig110933.2294.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig110933.2294.1
Unique Nameprot_M-pyrifera_M_contig110933.2294.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length134
Homology
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A7R9WB13_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.910e-22
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query:   34 AVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPGFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 133
            A  AT VV L +M+T +DL++ EEYK ++ED TEEC ++G+LK VVIP+ G PG+ ++FL Y     A  A A L GR FDGR + A +FDE +F A  +
Sbjct:  149 ATDATRVVELRHMLTQQDLENDEEYKDILEDTTEECGQFGSLKKVVIPRTG-PGATKIFLEYATKDDAAKAIASLAGRTFDGRKVTAVYFDEGRFAAEDY 247          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A7S4I336_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I336_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.790e-21
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 0
Query:   31 APPAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPGFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 133
            AP A+ AT VV L  M+T +DL++ +EYK ++ED TEEC ++G+LK VVIP+ G PG+ ++FL Y     A  A A L GR FDGR + A ++DEA+F A  +
Sbjct:  328 APHAIDATCVVELCQMLTQQDLENDDEYKEILEDTTEECGQFGSLKRVVIPRSG-PGATKIFLEYATKEDAARAIASLAGRTFDGRKVTAVYYDEARFAAQDY 429          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A1Z5KDF2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDF2_FISSO)

HSP 1 Score: 95.1 bits (235), Expect = 1.120e-20
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   40 VVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPGFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 133
            VV L NM++ +DL+DPEEY+ +++D  EEC+K+G L  V+IP+ G  G+ ++FL Y     A  A   L GR FDGR + A+FFDEAKF A  F
Sbjct:  253 VVQLKNMLSPQDLEDPEEYEDIMQDTREECSKFGNLLQVMIPRKGEVGATQIFLEYGSADEANAAILGLRGRTFDGRLVEATFFDEAKFAARDF 346          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A183IXS8_9BILA (RRM domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IXS8_9BILA)

HSP 1 Score: 90.1 bits (222), Expect = 1.260e-20
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 0
Query:   37 ATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 133
            AT V+ L NMVTAE+LKD +EY+ ++ED+ EEC KYG +K+V IP+P      PG G+VF+ ++++     A   L GR F  R +V S+FD   +   QF
Sbjct:   27 ATEVLCLMNMVTAEELKDNDEYEDILEDIREECTKYGAVKSVEIPRPIEGLDVPGVGKVFVEFSNVAECQRAQQGLTGRKFANRVVVTSYFDPDLYHRRQF 127          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A2G9GD33_9LAMI (Splicing factor U2af large subunit n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GD33_9LAMI)

HSP 1 Score: 95.5 bits (236), Expect = 1.290e-20
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 0
Query:   33 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP-----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 133
            P V AT VV L  +VTA++LKD ++Y+ +VED+  EC K+GTL  VVIP+P       PG G+VFL Y D+ +A  A   LNGR F G  +VA F+ E KF    +
Sbjct:  286 PTVVATKVVCLTEVVTADELKDDDDYEDIVEDMRTECGKFGTLVNVVIPRPLPSGEMGPGVGKVFLEYADIESATKARQGLNGRKFGGNQVVAVFYPENKFSQGDY 391          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A2K1JH19_PHYPA (Splicing factor U2af large subunit n=12 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JH19_PHYPA)

HSP 1 Score: 95.5 bits (236), Expect = 2.660e-20
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 0
Query:   33 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 133
            P   +T VVAL  +V+ ++LKD EEY+ ++ED+ EEC KYG L  VVIP+P      PG G+VF+ Y+D   A  A A L+GR F G ++VA ++ E KF A  +
Sbjct:  456 PLETSTKVVALTQVVSPDELKDDEEYQDILEDMKEECGKYGNLLRVVIPRPRDGEDVPGVGKVFVEYSDTAGAAKAKASLHGRRFGGHSVVAVYYPEEKFAAGDY 560          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A1S3U6D8_VIGRR (Splicing factor U2af large subunit n=2 Tax=Vigna TaxID=3913 RepID=A0A1S3U6D8_VIGRR)

HSP 1 Score: 94.7 bits (234), Expect = 2.770e-20
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 0
Query:   33 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP---GFP--GSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 128
            PA+ AT VV L + V+A++LKD E+Y+ +++D+ +EC+K+G+L  VVIP+P   G P  G G+VFL Y D+  A  A A LNGR FDG  +VA F+ E KF
Sbjct:  300 PALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGSLVNVVIPRPPHDGEPAAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKF 400          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A834TME4_9FABA (Splicing factor U2af large subunit n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TME4_9FABA)

HSP 1 Score: 94.7 bits (234), Expect = 2.790e-20
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 0
Query:   30 IAPPAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPG-----FPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 128
            + P  V AT VV L   ++A++LKD E+Y+ +VED+ +EC+K+GTL  VVIP+P       PG G+VFL Y D+  A  A   LNGR F G  +VA F+ E KF
Sbjct:  298 LQPALVTATKVVCLSQAISADELKDDEDYEEIVEDMRQECSKFGTLVNVVIPRPQPDGEPAPGVGKVFLEYADVEGATKARTGLNGRKFGGNQVVAVFYPENKF 401          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A1S3U6H9_VIGRR (Splicing factor U2af large subunit n=10 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A1S3U6H9_VIGRR)

HSP 1 Score: 94.7 bits (234), Expect = 2.810e-20
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 0
Query:   33 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP---GFP--GSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 128
            PA+ AT VV L + V+A++LKD E+Y+ +++D+ +EC+K+G+L  VVIP+P   G P  G G+VFL Y D+  A  A A LNGR FDG  +VA F+ E KF
Sbjct:  302 PALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGSLVNVVIPRPPHDGEPAAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKF 402          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: UPI000DECAAA3 (splicing factor U2af large subunit B-like isoform X5 n=3 Tax=50 kb inversion clade TaxID=2231393 RepID=UPI000DECAAA3)

HSP 1 Score: 94.7 bits (234), Expect = 3.280e-20
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 0
Query:   33 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP-----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 128
            PA+ AT VV L + V++++LKD E+Y+ +++D+ +EC+K+GTL  VVIP+P       PG G+VFL Y D+  A  A A LNGR F G  +VA F+ E KF
Sbjct:  325 PALVATKVVCLTHAVSSDELKDDEDYEEILDDMRQECSKFGTLVNVVIPRPQPNGEATPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVVAVFYPENKF 425          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9WB13_9STRA8.910e-2249.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4I336_9STRA1.790e-2148.54Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5KDF2_FISSO1.120e-2048.94Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A183IXS8_9BILA1.260e-2044.55RRM domain-containing protein n=1 Tax=Soboliphyme ... [more]
A0A2G9GD33_9LAMI1.290e-2047.17Splicing factor U2af large subunit n=1 Tax=Handroa... [more]
A0A2K1JH19_PHYPA2.660e-2045.71Splicing factor U2af large subunit n=12 Tax=Physco... [more]
A0A1S3U6D8_VIGRR2.770e-2049.50Splicing factor U2af large subunit n=2 Tax=Vigna T... [more]
A0A834TME4_9FABA2.790e-2047.12Splicing factor U2af large subunit n=1 Tax=Senna t... [more]
A0A1S3U6H9_VIGRR2.810e-2049.50Splicing factor U2af large subunit n=10 Tax=50 kb ... [more]
UPI000DECAAA33.280e-2047.52splicing factor U2af large subunit B-like isoform ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 40..121
e-value: 1.5E-4
score: 31.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 35..133
e-value: 2.2E-28
score: 100.3
NoneNo IPR availablePANTHERPTHR23139:SF9SPLICING FACTOR U2AF 65 KDA SUBUNITcoord: 33..132
NoneNo IPR availablePANTHERPTHR23139RNA-BINDING PROTEINcoord: 33..132
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 35..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110933contigM-pyrifera_M_contig110933:26..427 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110933.2294.1mRNA_M-pyrifera_M_contig110933.2294.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig110933 26..427 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig110933.2294.1 ID=prot_M-pyrifera_M_contig110933.2294.1|Name=mRNA_M-pyrifera_M_contig110933.2294.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MGLTGGGGGVGGMGGMGGMGGMAGVGGVGIAPPAVAATSVVALDNMVTAE
DLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPGFPGSGRVFLHYNDLPA
AVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003954RRM_dom_euk
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf