prot_M-pyrifera_M_contig99355.22856.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig99355.22856.1
Unique Nameprot_M-pyrifera_M_contig99355.22856.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length116
Homology
BLAST of mRNA_M-pyrifera_M_contig99355.22856.1 vs. uniprot
Match: K3X3H5_GLOUD (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=29 Tax=Oomycota TaxID=4762 RepID=K3X3H5_GLOUD)

HSP 1 Score: 129 bits (325), Expect = 2.520e-36
Identity = 61/111 (54.95%), Postives = 79/111 (71.17%), Query Frame = 0
Query:    1 KGESTRTDLILDVNSEVYPVMEGERLHIVLARTLHEDGTPDDGKFDQSGKPTLLDRFEYGMYGKVFKYDDIGDGNISVYASFGGLLMNLRGHQSGISDVTLDARIYCLIKK 111
            KG S   +L LD+NSEVY + + E+    L  TL  +G PDDG ++QSGKPTLLDR++YGMYGKVF+YD  G   +++YASFGGLLM LRG Q  +  +  D RIYCL++K
Sbjct:   31 KGVSYELELTLDINSEVYRLRQNEKFTFALVSTLDLEGKPDDGTYNQSGKPTLLDRYDYGMYGKVFQYDHEGGNVVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141          
BLAST of mRNA_M-pyrifera_M_contig99355.22856.1 vs. uniprot
Match: A0A024TMY4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TMY4_9STRA)

HSP 1 Score: 129 bits (323), Expect = 5.230e-36
Identity = 59/111 (53.15%), Postives = 82/111 (73.87%), Query Frame = 0
Query:    1 KGESTRTDLILDVNSEVYPVMEGERLHIVLARTLHEDGTPDDGKFDQSGKPTLLDRFEYGMYGKVFKYDDIGDGNISVYASFGGLLMNLRGHQSGISDVTLDARIYCLIKK 111
            KG S   +L+LD+NSEV+P+   E+    L  TL  +G PDDG FDQ+GKPTLLDR++YGMYGKVF+YD  G   +++YASFGGLLM LRG Q+ + ++   +R+YCL+++
Sbjct:   32 KGVSYELELMLDINSEVFPMKVHEQFTFALVSTLDLEGKPDDGIFDQTGKPTLLDRYDYGMYGKVFQYDHEGGNMVAIYASFGGLLMCLRGDQAHLRNIHNGSRVYCLMRR 142          
BLAST of mRNA_M-pyrifera_M_contig99355.22856.1 vs. uniprot
Match: A0A2R5G8T6_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8T6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.190e-35
Identity = 56/114 (49.12%), Postives = 84/114 (73.68%), Query Frame = 0
Query:    1 KGESTRTDLILDVNSEVYPVMEGERLHIVLARTLHEDGTPDDGKFDQSGKPTLLDRFEYGMYGKVFKYDDIGDGN--ISVYASFGGLLMNLRGHQSGISDVTLDARIYCLIKKA 112
            +G +   DL++D+ SE++P+   ER  + LA TL  DG PDDG ++QSG PTLLD+F+YGM+G+VF Y+ +G+G   +++YAS+GGLLM L G Q  ++ + LD RIYCL+K++
Sbjct:   40 RGATFEMDLVVDIQSELFPMAMNERFTLALASTLDMDGKPDDGTYNQSGAPTLLDKFDYGMHGRVFSYEYVGEGEHRVAIYASYGGLLMKLVGDQRKLNTIDLDTRIYCLLKRS 153          
BLAST of mRNA_M-pyrifera_M_contig99355.22856.1 vs. uniprot
Match: A0A024G723_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G723_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.330e-34
Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 0
Query:    1 KGESTRTDLILDVNSEVYPVMEGERLHIVLARTLHEDGTPDDGKFDQSGKPTLLDRFEYGMYGKVFKYDDIGDGNISVYASFGGLLMNLRGHQSGISDVTLDARIYCLIKK 111
            KG S   +L LD+NSEV+ + + ++    L  TL  +G PDDG ++QSGK TLLDR++YGMYGK+F+Y+  G  N+++YASFGGLLM LRG Q  +  V  D+RIYCL++K
Sbjct:   67 KGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFQYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRK 177          
BLAST of mRNA_M-pyrifera_M_contig99355.22856.1 vs. uniprot
Match: A0A0W8DEU7_PHYNI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DEU7_PHYNI)

HSP 1 Score: 123 bits (309), Expect = 4.100e-34
Identity = 57/100 (57.00%), Postives = 74/100 (74.00%), Query Frame = 0
Query:   12 DVNSEVYPVMEGERLHIVLARTLHEDGTPDDGKFDQSGKPTLLDRFEYGMYGKVFKYDDIGDGNISVYASFGGLLMNLRGHQSGISDVTLDARIYCLIKK 111
            D+NSEVY + + E+  + L  TL  +G PDDG F+QSGKPTLLDR++YGMYGKVF+YD  G   +++YASFGGLLM LRG Q  +  +  D RIYCL++K
Sbjct:   25 DINSEVYRLRQNEKFTLALVSTLDLEGKPDDGIFNQSGKPTLLDRYDYGMYGKVFQYDHEGGNMVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 124          
BLAST of mRNA_M-pyrifera_M_contig99355.22856.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.060e-34
Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = 0
Query:    2 GESTRTDLILDVNSEVYPVMEGERLHIVLARTLHEDGTPDDGKFDQSGKPTLLDRFEYGMYGKVFKYDDIGDGNISVYASFGGLLMNLRGHQSGISDVTLDARIYCLIKK 111
            G + + DL+LD NSE+YP+ E E++ IVL+ TL  DG PDDG++DQSG+PT+ D +EY M+G+VF     GDG I+V+ SFGGLLM L G Q  + +V  D R+Y LIKK
Sbjct:   34 GTTFQCDLLLDTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEYDQSGEPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIKK 143          
BLAST of mRNA_M-pyrifera_M_contig99355.22856.1 vs. uniprot
Match: F0W6P2_9STRA (DNAdirected RNA polymerase I putative n=3 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6P2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 6.710e-33
Identity = 57/111 (51.35%), Postives = 79/111 (71.17%), Query Frame = 0
Query:    1 KGESTRTDLILDVNSEVYPVMEGERLHIVLARTLHEDGTPDDGKFDQSGKPTLLDRFEYGMYGKVFKYDDIGDGNISVYASFGGLLMNLRGHQSGISDVTLDARIYCLIKK 111
            KG S   +L LD+NSEV+ + + ++    L  TL  +G PDDG ++QSGK TLLDR++YGMYGK+F Y+  G  N+++YASFGGLLM LRG Q  +  V  D+R+YCL++K
Sbjct:  114 KGVSYELELTLDINSEVWRLKKNDKFTFALVCTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 224          
BLAST of mRNA_M-pyrifera_M_contig99355.22856.1 vs. uniprot
Match: A0A813B0I3_9DINO (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B0I3_9DINO)

HSP 1 Score: 120 bits (301), Expect = 1.520e-32
Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = 0
Query:    1 KGESTRTDLILDVNSEVYPVMEGERLHIVLARTLHEDGTPDDGKFDQSGKPTLLDRFEYGMYGKVFKYDDIGDGNISVYASFGGLLMNLRGHQSGISDVTLDARIYCLIKKA 112
            K E+   D+ +D+ SEVYP+ + E+  +VL  TL  DG PDDG +DQS K + LD FEYGM GK+FKYD   D  +S+YAS+GGLLM ++G    +  + LD+R+YCL+++A
Sbjct:   37 KSETYGIDMSIDIASEVYPLKKDEKFAMVLRSTLRLDGKPDDGTYDQSTKESALDAFEYGMSGKIFKYDHAEDARVSIYASYGGLLMLVQGKAEHLKALKLDSRVYCLMRRA 148          
BLAST of mRNA_M-pyrifera_M_contig99355.22856.1 vs. uniprot
Match: A0A7S1CMR6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMR6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.970e-32
Identity = 59/115 (51.30%), Postives = 81/115 (70.43%), Query Frame = 0
Query:    1 KGESTRTDLILDVNSEVYPVMEGERLHIVLARTLHEDGTPDDGKFDQS-GKPTLLDRFEYGMYGKVFKYDDIGDGNISVYASFGGLLMNLRGHQSGISDVTLDARIYCLIKKALA 114
            KGE+    L +DV SEV+PV  GE+L + +  TL  DG PDDG +  + G+ +LLD+++YGM+G+VFKYD   D  +SVYASFGGLLM L G Q  +S ++LD R+YCLI++  A
Sbjct:   34 KGETWDVLLKIDVASEVFPVKAGEKLAVAVVSTLRLDGEPDDGTYQHNEGEESLLDQYDYGMHGRVFKYDYEEDDRVSVYASFGGLLMLLHGQQDSLSSLSLDQRVYCLIRRPKA 148          
BLAST of mRNA_M-pyrifera_M_contig99355.22856.1 vs. uniprot
Match: A0A2R6WCZ2_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WCZ2_MARPO)

HSP 1 Score: 113 bits (283), Expect = 6.290e-30
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 0
Query:    8 DLILDVNSEVYPVMEGERLHIVLARTLHEDGTPDDGKFDQSGKPTLLDRFEYGMYGKVFKYDDI---GDGNISVYASFGGLLMNLRGHQSGISDVTLDARIYCLIKK 111
            DL+ DVN++VYP+   E+  + LA TL  DGTPDDG FDQSG+ +L D+FEY MYGK++KY D+   G   + VY SFGGLLM L+G  + ++   +D R+Y LI+K
Sbjct:   37 DLLFDVNTDVYPMALEEKFALALATTLSLDGTPDDGFFDQSGRKSLADKFEYVMYGKLYKYSDVDVNGISKVEVYISFGGLLMMLKGDPNHLNAFQVDQRLYLLIRK 143          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99355.22856.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3X3H5_GLOUD2.520e-3654.95DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A024TMY4_9STRA5.230e-3653.15DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A2R5G8T6_9STRA3.190e-3549.12DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A024G723_9STRA3.330e-3452.25Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A0W8DEU7_PHYNI4.100e-3457.00DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1BC37_9STRA5.060e-3453.64DNA-directed RNA polymerases I, II, and III subuni... [more]
F0W6P2_9STRA6.710e-3351.35DNAdirected RNA polymerase I putative n=3 Tax=Albu... [more]
A0A813B0I3_9DINO1.520e-3249.11DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1CMR6_9STRA1.970e-3251.30Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2R6WCZ2_MARPO6.290e-3051.40Uncharacterized protein n=2 Tax=Marchantia polymor... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 1..111
e-value: 3.1E-19
score: 79.9
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 2..111
e-value: 1.8E-34
score: 118.9
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..113
e-value: 9.8E-31
score: 104.7
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 2..111
NoneNo IPR availableGENE3D2.40.50.140coord: 1..113
e-value: 5.1E-35
score: 122.4
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 2..111
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 4..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99355contigM-pyrifera_M_contig99355:3..470 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99355.22856.1mRNA_M-pyrifera_M_contig99355.22856.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig99355 3..470 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig99355.22856.1 ID=prot_M-pyrifera_M_contig99355.22856.1|Name=mRNA_M-pyrifera_M_contig99355.22856.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
KGESTRTDLILDVNSEVYPVMEGERLHIVLARTLHEDGTPDDGKFDQSGK
PTLLDRFEYGMYGKVFKYDDIGDGNISVYASFGGLLMNLRGHQSGISDVT
LDARIYCLIKKALAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold