mRNA_M-pyrifera_M_contig110892.2286.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110892.2286.1
Unique NamemRNA_M-pyrifera_M_contig110892.2286.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110892.2286.1 vs. uniprot
Match: A0A6U1X8U5_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1X8U5_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 3.310e-35
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 KNVLVMHDGQNLFNPSTSFGGIAWLCQDTVDHLVVNGSMEEIIIVGLYNTPERIDEYTYSYDPCYSGALD-HCSPGGGEGDLYL 249
            KNVLVMHDGQNLFN STSFGGIAW C DT++ LVV G MEE++I+G YNTP+R+DEYTY YDPCY+      C  GGG+GDLYL
Sbjct:  153 KNVLVMHDGQNLFNASTSFGGIAWNCDDTINQLVVEGQMEEVLIIGAYNTPDRLDEYTYVYDPCYTTNFKGDCEGGGGKGDLYL 236          
BLAST of mRNA_M-pyrifera_M_contig110892.2286.1 vs. uniprot
Match: F2E753_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E753_HORVV)

HSP 1 Score: 125 bits (313), Expect = 1.560e-32
Identity = 52/83 (62.65%), Postives = 66/83 (79.52%), Query Frame = 1
Query:    1 KNVLVMHDGQNLFNPSTSFGGIAWLCQDTVDHLVVNGSMEEIIIVGLYNTPERIDEYTYSYDPCYSGALDHCSPGGGEGDLYL 249
            +NVLVM DGQNLFN ST+FGG  W C  T+D LVV G+++E++++G+YNTP+R+DEYTYSYDPCY      C  GGG+GDLYL
Sbjct:  159 RNVLVMQDGQNLFNASTAFGGTPWNCGSTIDQLVVQGAIDELLVIGVYNTPDRLDEYTYSYDPCYDTVRGKCVGGGGKGDLYL 241          
BLAST of mRNA_M-pyrifera_M_contig110892.2286.1 vs. uniprot
Match: A0A482SUF6_9ARCH (Alpha/beta hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUF6_9ARCH)

HSP 1 Score: 109 bits (273), Expect = 7.630e-27
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    4 NVLVMHDGQNLFNPSTSFGGIAWLCQDTVDHLVVNGSMEEIIIVGLYNTPERIDEYTYSYDPCYSGALDHCSPGGGEGDLYL 249
            NVLVMHDGQNLF+P TS  G AW+CQDT+D L+V G M+E++I+G YNTP+RI+EYTY YDP            GG+GD+YL
Sbjct:  155 NVLVMHDGQNLFDPKTSAFGTAWMCQDTLDSLIVQGKMDEVVIIGAYNTPDRINEYTYIYDPSEES--------GGKGDIYL 228          
BLAST of mRNA_M-pyrifera_M_contig110892.2286.1 vs. uniprot
Match: A0A7S3G7V2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G7V2_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 2.100e-25
Identity = 48/81 (59.26%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VLVMHDGQNLFNPSTSFGGIAWLCQDTVDHLVVNGSMEEIIIVGLYNTPERIDEYTYSYDPCYSGALDHCSPGGGEGDLYL 249
            VL+MHDGQNLFN STSF GIAW CQDT+D L+V G + E+ ++  YNTP+R DEYTYSYDP            GG+GD YL
Sbjct:   92 VLIMHDGQNLFNASTSFLGIAWQCQDTLDTLIVEGGIREVAVLAPYNTPDRTDEYTYSYDPTEQA--------GGKGDDYL 164          
BLAST of mRNA_M-pyrifera_M_contig110892.2286.1 vs. uniprot
Match: A0A6B2LF31_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LF31_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 1.340e-24
Identity = 51/81 (62.96%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    7 VLVMHDGQNLFNPSTSFGGIAWLCQDTVDHLVVNGSMEEIIIVGLYNTPERIDEYTYSYDPCYSGALDHCSPGGGEGDLYL 249
            VL MHDGQNLFN STSFGG +W CQDTV+ LVV G M+EIIIVG+ NT  R DE TYSYDP            GG GD YL
Sbjct:   26 VLFMHDGQNLFNDSTSFGGRSWRCQDTVNRLVVTGDMDEIIIVGIDNTVNRTDELTYSYDPSVQA--------GGNGDAYL 98          
BLAST of mRNA_M-pyrifera_M_contig110892.2286.1 vs. uniprot
Match: A0A7S1CG26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CG26_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.040e-22
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 KNVLVMHDGQNLFNPSTSFGGIAWLCQDTVDHLVVNGSMEEIIIVGLYNTPERIDEYTYSYDPCYSG 201
            +N ++MHDG+NLFN STSFGGIAW C  TVD LV  G+MEE++IVG+ N   R  EYTYS DP Y G
Sbjct:   34 RNPILMHDGENLFNASTSFGGIAWRCDTTVDTLVAEGNMEEVVIVGVNNDINRTAEYTYSKDPTYGG 100          
BLAST of mRNA_M-pyrifera_M_contig110892.2286.1 vs. uniprot
Match: A0A8J8NN20_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NN20_HALGN)

HSP 1 Score: 96.7 bits (239), Expect = 2.390e-22
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 KNVLVMHDGQNLFNPSTSFGGIAWLCQDTVDHLVVNGSMEEIIIVGLYNTPERIDEYTYSYDPCYSGALDHCSPGGGEGDLYL 249
            +N+L+MHDG NLF+P+T+F G AW+ Q+T++ L+  G +EE++++G YNT +R++EYTYSYDP            GG+GDLYL
Sbjct:   63 ENILIMHDGNNLFDPATAFMGNAWMIQNTINPLIYQGKIEEVVVIGAYNTDDRMNEYTYSYDPSEKF--------GGKGDLYL 137          
BLAST of mRNA_M-pyrifera_M_contig110892.2286.1 vs. uniprot
Match: A0A812QAD8_SYMMI (YbbA protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QAD8_SYMMI)

HSP 1 Score: 92.8 bits (229), Expect = 1.580e-21
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   16 MHDGQNLFNPSTSFGGIAWLCQDTVDHLVVNGSMEEIIIVGLYNTPERIDEYTYSYDPCYSGALDHCSPGGGEGDLYL 249
            MHDGQNLFN +T++ G AW+CQ+++D  ++ G+ +E++IVG YNT +R+DEYTY YDP   GA       GG+GDLYL
Sbjct:    1 MHDGQNLFNKATAYMGNAWMCQESLDTSIIGGTTDEVLIVGAYNTADRMDEYTYVYDPS-EGA-------GGKGDLYL 70          
BLAST of mRNA_M-pyrifera_M_contig110892.2286.1 vs. uniprot
Match: A0A0L0DWX4_THETB (1 carbohydrate esterase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DWX4_THETB)

HSP 1 Score: 90.1 bits (222), Expect = 1.030e-19
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   10 LVMHDGQNLFNPSTSFGGIAWLCQDTVDHLVVNGSMEEIIIVGLYNTPERIDEYTYSYDPCYSGALDHCSPGGGEGDLYL 249
            L+M DGQNLFN STSF GIAW CQ T++ L++ G + EI++VG+ NT  RIDEYT SYDP   G        GG+ D YL
Sbjct:  108 LIMQDGQNLFNASTSFAGIAWDCQKTMNPLIIEGVVPEIVLVGVDNTAARIDEYTPSYDPSVGG--------GGKADTYL 179          
BLAST of mRNA_M-pyrifera_M_contig110892.2286.1 vs. uniprot
Match: D2VMS7_NAEGR (Esterase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VMS7_NAEGR)

HSP 1 Score: 89.7 bits (221), Expect = 2.990e-19
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    4 NVLVMHDGQNLFNPSTSFGGIAWLCQDTVDHLVVNG----SMEEIIIVGLYNTPERIDEYTYSYDPCYSGALDHCSPGGGEGDLYL 249
            N+L+MHDGQNLF+P+T+F   AW+ Q+T+D L+ +     +MEEII++G+ NTP+R++EYTYS D  Y         GGG+GDLYL
Sbjct:  185 NLLIMHDGQNLFDPATAFLNQAWMIQNTLDPLITSMDPSYAMEEIIVIGIDNTPDRLNEYTYSKDKDY---------GGGKGDLYL 261          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110892.2286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U1X8U5_9EUKA3.310e-3570.24Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
F2E753_HORVV1.560e-3262.65Predicted protein n=1 Tax=Hordeum vulgare subsp. v... [more]
A0A482SUF6_9ARCH7.630e-2759.76Alpha/beta hydrolase n=1 Tax=archaeon TaxID=190666... [more]
A0A7S3G7V2_9EUKA2.100e-2559.26Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A6B2LF31_9EUKA1.340e-2462.96Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S1CG26_9STRA1.040e-2262.69Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J8NN20_HALGN2.390e-2249.40Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A812QAD8_SYMMI1.580e-2153.85YbbA protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A0L0DWX4_THETB1.030e-1955.001 carbohydrate esterase n=1 Tax=Thecamonas trahens... [more]
D2VMS7_NAEGR2.990e-1951.16Esterase n=1 Tax=Naegleria gruberi TaxID=5762 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110892contigM-pyrifera_M_contig110892:347..595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog529818.AMSG_02055T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Putative esterase
EggNOG OGs2S6N9@2759,COG2819@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size249
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.8155608-CDS-M-pyrifera_M_contig110892:346..5801622815620.8155608-CDS-M-pyrifera_M_contig110892:346..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110892 347..580 -
1692277491.1472929-CDS-M-pyrifera_M_contig110892:346..5801692277491.1472929-CDS-M-pyrifera_M_contig110892:346..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110892 347..580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.8322806-UTR-M-pyrifera_M_contig110892:580..5951622815620.8322806-UTR-M-pyrifera_M_contig110892:580..595Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110892 581..595 -
1692277491.1573377-UTR-M-pyrifera_M_contig110892:580..5951692277491.1573377-UTR-M-pyrifera_M_contig110892:580..595Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110892 581..595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110892.2286.1prot_M-pyrifera_M_contig110892.2286.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110892 347..580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110892.2286.1

>prot_M-pyrifera_M_contig110892.2286.1 ID=prot_M-pyrifera_M_contig110892.2286.1|Name=mRNA_M-pyrifera_M_contig110892.2286.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
MHDGQNLFNPSTSFGGIAWLCQDTVDHLVVNGSMEEIIIVGLYNTPERID
EYTYSYDPCYSGALDHCSPGGGEGDLYL
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mRNA from alignment at M-pyrifera_M_contig110892:347..595-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110892.2286.1 ID=mRNA_M-pyrifera_M_contig110892.2286.1|Name=mRNA_M-pyrifera_M_contig110892.2286.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig110892:347..595- (Macrocystis pyrifera P11B4 male)
AAGAACGTGCTGGTGATGCACGACGGCCAGAACCTCTTCAACCCCAGCAC TTCCTTTGGCGGCATTGCGTGGCTCTGCCAGGACACTGTGGACCACTTGG TGGTGAACGGTAGCATGGAGGAGATCATCATCGTCGGCCTCTACAACACC CCAGAGAGGATTGACGAGTACACCTACAGCTACGACCCCTGCTACTCTGG CGCTCTCGACCACTGCTCCCCTGGTGGGGGCGAGGGAGACCTTTACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110892:347..595-

>mRNA_M-pyrifera_M_contig110892.2286.1 ID=mRNA_M-pyrifera_M_contig110892.2286.1|Name=mRNA_M-pyrifera_M_contig110892.2286.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig110892:347..595- (Macrocystis pyrifera P11B4 male)
ATGCACGACGGCCAGAACCTCTTCAACCCCAGCACTTCCTTTGGCGGCAT
TGCGTGGCTCTGCCAGGACACTGTGGACCACTTGGTGGTGAACGGTAGCA
TGGAGGAGATCATCATCGTCGGCCTCTACAACACCCCAGAGAGGATTGAC
GAGTACACCTACAGCTACGACCCCTGCTACTCTGGCGCTCTCGACCACTG
CTCCCCTGGTGGGGGCGAGGGAGACCTTTACCTCATGCACGACGGCCAGA
ACCTCTTCAACCCCAGCACTTCCTTTGGCGGCATTGCGTGGCTCTGCCAG
GACACTGTGGACCACTTGGTGGTGAACGGTAGCATGGAGGAGATCATCAT
CGTCGGCCTCTACAACACCCCAGAGAGGATTGACGAGTACACCTACAGCT
ACGACCCCTGCTACTCTGGCGCTCTCGACCACTGCTCCCCTGGTGGGGGC
GAGGGAGACCTTTACCTC
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