mRNA_M-pyrifera_M_contig110859.2283.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110859.2283.1
Unique NamemRNA_M-pyrifera_M_contig110859.2283.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110859.2283.1 vs. uniprot
Match: D8LLV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLV1_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 9.080e-18
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 LGRLINILLNNCEYVEDRLIKEKRYQDACRNPTLVTGLDLKRKFVATLAKRV 156
            L + INILLNNCE++ +RL  EKRYQDACR+PTL +GLDLKR+FVA LAKRV
Sbjct:  159 LHKFINILLNNCEFISERLASEKRYQDACRDPTLPSGLDLKRQFVAPLAKRV 210
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110859.2283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLV1_ECTSI9.080e-1873.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110859contigM-pyrifera_M_contig110859:277..432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001770.1
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.6209564-CDS-M-pyrifera_M_contig110859:276..4321622815620.6209564-CDS-M-pyrifera_M_contig110859:276..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110859 277..432 +
1692277491.0338917-CDS-M-pyrifera_M_contig110859:276..4321692277491.0338917-CDS-M-pyrifera_M_contig110859:276..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110859 277..432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110859.2283.1prot_M-pyrifera_M_contig110859.2283.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110859 277..432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110859.2283.1

>prot_M-pyrifera_M_contig110859.2283.1 ID=prot_M-pyrifera_M_contig110859.2283.1|Name=mRNA_M-pyrifera_M_contig110859.2283.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
LGRLINILLNNCEYVEDRLIKEKRYQDACRNPTLVTGLDLKRKFVATLAK
RV
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mRNA from alignment at M-pyrifera_M_contig110859:277..432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110859.2283.1 ID=mRNA_M-pyrifera_M_contig110859.2283.1|Name=mRNA_M-pyrifera_M_contig110859.2283.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig110859:277..432+ (Macrocystis pyrifera P11B4 male)
TTGGGCAGATTGATCAATATTTTGCTGAACAACTGCGAATACGTGGAAGA
TCGACTCATCAAGGAGAAGCGGTACCAAGACGCTTGTCGGAACCCCACTC
TCGTGACGGGCCTGGACCTCAAGAGAAAGTTCGTCGCTACACTCGCCAAA
AGGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110859:277..432+

>mRNA_M-pyrifera_M_contig110859.2283.1 ID=mRNA_M-pyrifera_M_contig110859.2283.1|Name=mRNA_M-pyrifera_M_contig110859.2283.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig110859:277..432+ (Macrocystis pyrifera P11B4 male)
TTGGGCAGATTGATCAATATTTTGCTGAACAACTGCGAATACGTGGAAGA
TCGACTCATCAAGGAGAAGCGGTACCAAGACGCTTGTCGGAACCCCACTC
TCGTGACGGGCCTGGACCTCAAGAGAAAGTTCGTCGCTACACTCGCCAAA
AGGGTTTTGGGCAGATTGATCAATATTTTGCTGAACAACTGCGAATACGT
GGAAGATCGACTCATCAAGGAGAAGCGGTACCAAGACGCTTGTCGGAACC
CCACTCTCGTGACGGGCCTGGACCTCAAGAGAAAGTTCGTCGCTACACTC
GCCAAAAGGGTT
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