prot_M-pyrifera_M_contig99072.22791.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig99072.22791.1
Unique Name	prot_M-pyrifera_M_contig99072.22791.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	127

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig99072.22791.1 vs. uniprot
Match: F0ZB33_DICPU (H15 domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZB33_DICPU)

HSP 1 Score: 50.8 bits (120), Expect = 3.770e-5
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 0

Query:    9 PAHPPFQTMALAAVAGLKSRKPVSAHAVRKYVLAEYTVQEG-TAARHLRVALAKLVEEGLLARVAASFKLTAAGRAALAKKG----RKPAA 94
            P HP +Q M   A+A LK R   S  A+ KY+   Y V +     R LR+AL +L+++G+L ++ AS+KL+  G+ A   +G    +KPAA
Sbjct:   19 PNHPTYQVMISHAIAALKERFGSSQPAIIKYIENNYNVGDSENFKRQLRLALKRLLKDGVLVQIKASYKLSEEGKKAHKSEGGAATKKPAA 109

[Close]

BLAST of mRNA_M-pyrifera_M_contig99072.22791.1 vs. uniprot
Match: A0A6A0GQM3_HYAAZ (histone H1-delta-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GQM3_HYAAZ)

HSP 1 Score: 50.1 bits (118), Expect = 8.860e-5
Identity = 33/83 (39.76%), Postives = 45/83 (54.22%), Query Frame = 0

Query:   11 HPPFQTMALAAVAGLKSRKPVSAHAVRKYVLAEYTVQEGTAARHLRVALAKLVEEGLLARVAAS-----FKLTAAGRAALAKK 88
            HP +  M  AAVA LK RK  SA A++KY+ A Y V+E +   ++R AL + V  G L +V  S     FKL  + +    KK
Sbjct:   33 HPKYSEMVTAAVAALKERKGSSARAIKKYIAANYKVEEKSIGTYVRSALKRGVSSGQLTQVKGSGANGSFKLAESAKPKKEKK 115

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig99072.22791.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig99072.22791.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
F0ZB33_DICPU	3.770e-5	38.46	H15 domain-containing protein n=1 Tax=Dictyosteliu...	[more]
A0A6A0GQM3_HYAAZ	8.860e-5	39.76	histone H1-delta-like n=1 Tax=Hyalella azteca TaxI...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 8..74 e-value: 5.4E-14 score: 62.5
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 11..77 e-value: 1.2E-12 score: 48.0
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 10..79 score: 20.027
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 6..98 e-value: 5.3E-14 score: 54.1
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 8..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig99072	contig	M-pyrifera_M_contig99072:172..552 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig99072.22791.1	mRNA_M-pyrifera_M_contig99072.22791.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig99072 172..552 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig99072.22791.1 ID=prot_M-pyrifera_M_contig99072.22791.1|Name=mRNA_M-pyrifera_M_contig99072.22791.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
MPSSAPKAPAHPPFQTMALAAVAGLKSRKPVSAHAVRKYVLAEYTVQEGT
AARHLRVALAKLVEEGLLARVAASFKLTAAGRAALAKKGRKPAAKAAAKK
AGAKASAKAAAKKGAAKAAPKARGPAA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005818	Histone_H1/H5_H15
IPR036388	WH-like_DNA-bd_sf
IPR036390	WH_DNA-bd_sf