mRNA_M-pyrifera_M_contig98956.22758.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98956.22758.1
Unique NamemRNA_M-pyrifera_M_contig98956.22758.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98956.22758.1 vs. uniprot
Match: L8GIA0_ACACA (Phospholipase/carboxylesterase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIA0_ACACA)

HSP 1 Score: 75.5 bits (184), Expect = 1.990e-13
Identity = 51/146 (34.93%), Postives = 77/146 (52.74%), Query Frame = 1 
Query:    1 GAIVSLETALHCKNATGGARLGGCLLFSDSLLDEAMMK---GHTTISWPDRSLMTDTATPIFVSHGTADKTVPLNVASDKVAALRQVVMLTQGT------VEFKEYNKGHQMINSSEEVRDVFTFLSKHMVMRNPALEKDSSLYSV 411
            GA+V++  AL   +      LGG +  S SLL+E  +    G T  + P R       TP+ V+HG  D+ VPL+ A   +  +R      +        V++KEY KGH+MI S EE++DV  FL++H+ +R+ ALE+   L  V
Sbjct:  179 GAVVAVRLALTLVDRP----LGGVIAVSSSLLEEEALATPIGPTASAAPPR-------TPLLVTHGRRDRMVPLDQARRHLVHVRSRYGAAEAEAGGKALVQWKEYEKGHEMIKSREEMQDVMAFLAEHLRLRSVALERRDDLIEV 313
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BLAST of mRNA_M-pyrifera_M_contig98956.22758.1 vs. uniprot
Match: A0A2P6NI85_9EUKA (MYND-type domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NI85_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 3.600e-12
Identity = 41/138 (29.71%), Postives = 72/138 (52.17%), Query Frame = 1 
Query:    1 GAIVSLETALHCKNATGGARLGGCLLFSDSLLDEAMMKGHTTISWPDRSLMTDTATPIFVSHGTADKTVPLNVASDKVAALRQVVMLTQGTVEFKEYNKGHQMINSSEEVRDVFTFLSKHMVMRNPALEKDSSLYSVD 414
            G  V +   +HC     G   GG ++ S ++LDE + + +   +    S+ T    P F++HG  D+ +P++ A +K   ++  +   +    + EY+KGH MI+S EE +D+  F SK + +RN ALE    L  ++
Sbjct:  194 GGAVVMHYTIHC-----GKTFGGSIIISGNVLDEYLQRENERPTLVASSIRT----PFFITHGRRDQMLPISKAREKYQTVKDKMEGVEW--HYHEYDKGHTMISSKEEAKDLVEFFSKRLKLRNIALEDRDDLIQIN 320
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BLAST of mRNA_M-pyrifera_M_contig98956.22758.1 vs. uniprot
Match: A0A7S4MZG0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4MZG0_GUITH)

HSP 1 Score: 65.1 bits (157), Expect = 1.330e-9
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:    1 GAIVSLETALHCKNATGGARLGGCLLFSDSLLDEAMMKGHTTISWPDRSLMTDTATPIFVSHGTADKTVPLNVASDKVAALRQVVMLTQGTVEFKEYNKGHQMINSSEEVRDVFTFLSKHMVM 369
            GAIV++   L          LGG +  S SL+ E     H + SWP       ++TP+ ++HG AD+ V +  A      LR  V   + T+E+KEYNKGH M+   EEVRD+ +F ++H+V+
Sbjct:  226 GAIVAVNAGLRMN-------LGGVVGVSGSLIQEQ----HDS-SWPPPP-GGKSSTPMLLTHGVADERVSITKARACRDRLRGWV--EEETMEWKEYNKGHDMVRQQEEVRDLMSFFARHLVL 333
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98956.22758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
L8GIA0_ACACA1.990e-1334.93Phospholipase/carboxylesterase n=1 Tax=Acanthamoeb... [more]
A0A2P6NI85_9EUKA3.600e-1229.71MYND-type domain-containing protein n=1 Tax=Planop... [more]
A0A7S4MZG0_GUITH1.330e-936.59Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98956contigM-pyrifera_M_contig98956:1..426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score60.8
Seed ortholog evalue5.8e-07
Seed eggNOG ortholog192875.XP_004345600.1
Hectar predicted targeting categoryother localisation
GOsGO:0002084,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008474,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0016790,GO:0019538,GO:0030163,GO:0035601,GO:0036211,GO:0042157,GO:0042159,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0052689,GO:0071704,GO:0098599,GO:0098732,GO:0098734,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Phospholipase/Carboxylesterase
EggNOG OGs38B9K@33154,COG0400@1,KOG2112@2759
COG Functional cat.I
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.0489233-CDS-M-pyrifera_M_contig98956:0..4261622816906.0489233-CDS-M-pyrifera_M_contig98956:0..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98956 1..426 +
1692278247.8365853-CDS-M-pyrifera_M_contig98956:0..4261692278247.8365853-CDS-M-pyrifera_M_contig98956:0..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98956 1..426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98956.22758.1prot_M-pyrifera_M_contig98956.22758.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98956 1..426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98956.22758.1

>prot_M-pyrifera_M_contig98956.22758.1 ID=prot_M-pyrifera_M_contig98956.22758.1|Name=mRNA_M-pyrifera_M_contig98956.22758.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
GAIVSLETALHCKNATGGARLGGCLLFSDSLLDEAMMKGHTTISWPDRSL
MTDTATPIFVSHGTADKTVPLNVASDKVAALRQVVMLTQGTVEFKEYNKG
HQMINSSEEVRDVFTFLSKHMVMRNPALEKDSSLYSVDSTA*
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mRNA from alignment at M-pyrifera_M_contig98956:1..426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98956.22758.1 ID=mRNA_M-pyrifera_M_contig98956.22758.1|Name=mRNA_M-pyrifera_M_contig98956.22758.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig98956:1..426+ (Macrocystis pyrifera P11B4 male)
GGAGCCATCGTGAGCCTCGAGACGGCTCTGCACTGCAAGAATGCCACGGG
CGGCGCTCGCCTCGGTGGCTGTCTGCTGTTTTCAGATTCTCTTCTGGACG
AGGCCATGATGAAGGGACATACCACAATCAGCTGGCCAGACCGCTCGCTC
ATGACAGACACTGCGACGCCGATCTTTGTATCGCACGGCACTGCAGACAA
GACAGTGCCGCTCAACGTCGCTTCCGATAAGGTCGCTGCCTTGCGCCAGG
TGGTGATGCTGACCCAAGGAACGGTTGAGTTCAAGGAGTACAACAAGGGC
CACCAAATGATCAACTCCAGCGAGGAGGTGCGCGATGTGTTCACCTTTCT
CTCCAAGCACATGGTCATGCGGAACCCTGCTCTGGAGAAGGACAGCTCGC
TCTACAGCGTCGATTCCACGGCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98956:1..426+

>mRNA_M-pyrifera_M_contig98956.22758.1 ID=mRNA_M-pyrifera_M_contig98956.22758.1|Name=mRNA_M-pyrifera_M_contig98956.22758.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig98956:1..426+ (Macrocystis pyrifera P11B4 male)
GGAGCCATCGTGAGCCTCGAGACGGCTCTGCACTGCAAGAATGCCACGGG
CGGCGCTCGCCTCGGTGGCTGTCTGCTGTTTTCAGATTCTCTTCTGGACG
AGGCCATGATGAAGGGACATACCACAATCAGCTGGCCAGACCGCTCGCTC
ATGACAGACACTGCGACGCCGATCTTTGTATCGCACGGCACTGCAGACAA
GACAGTGCCGCTCAACGTCGCTTCCGATAAGGTCGCTGCCTTGCGCCAGG
TGGTGATGCTGACCCAAGGAACGGTTGAGTTCAAGGAGTACAACAAGGGC
CACCAAATGATCAACTCCAGCGAGGAGGTGCGCGATGTGTTCACCTTTCT
CTCCAAGCACATGGTCATGCGGAACCCTGCTCTGGAGAAGGACAGCTCGC
TCTACAGCGTCGATTCCACGGCTTAGGGAGCCATCGTGAGCCTCGAGACG
GCTCTGCACTGCAAGAATGCCACGGGCGGCGCTCGCCTCGGTGGCTGTCT
GCTGTTTTCAGATTCTCTTCTGGACGAGGCCATGATGAAGGGACATACCA
CAATCAGCTGGCCAGACCGCTCGCTCATGACAGACACTGCGACGCCGATC
TTTGTATCGCACGGCACTGCAGACAAGACAGTGCCGCTCAACGTCGCTTC
CGATAAGGTCGCTGCCTTGCGCCAGGTGGTGATGCTGACCCAAGGAACGG
TTGAGTTCAAGGAGTACAACAAGGGCCACCAAATGATCAACTCCAGCGAG
GAGGTGCGCGATGTGTTCACCTTTCTCTCCAAGCACATGGTCATGCGGAA
CCCTGCTCTGGAGAAGGACAGCTCGCTCTACAGCGTCGATTCCACGGCTT
AG
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