mRNA_M-pyrifera_M_contig11079.2270.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11079.2270.1
Unique NamemRNA_M-pyrifera_M_contig11079.2270.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11079.2270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11079contigM-pyrifera_M_contig11079:7570..8042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.9529402-CDS-M-pyrifera_M_contig11079:7569..80401622815619.9529402-CDS-M-pyrifera_M_contig11079:7569..8040Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11079 7570..8040 +
1692277490.73225-CDS-M-pyrifera_M_contig11079:7569..80401692277490.73225-CDS-M-pyrifera_M_contig11079:7569..8040Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11079 7570..8040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11079.2270.1prot_M-pyrifera_M_contig11079.2270.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11079 7570..8040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11079.2270.1

>prot_M-pyrifera_M_contig11079.2270.1 ID=prot_M-pyrifera_M_contig11079.2270.1|Name=mRNA_M-pyrifera_M_contig11079.2270.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
GFSVAFNHAVRGNGPQRATDLGEEVGRGRQVPQHLAAYSRCHWIDLNMCV
GVDVYFPWARLVVTLRGVSMHADGMYALRERPIHTSRAMLKRFCVLLYQV
PAICIRTCIRKRGTRVRERSKRACKLGRGRERAVSRNCSAGCCSRDSLSN
ISNPIYL
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mRNA from alignment at M-pyrifera_M_contig11079:7570..8042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11079.2270.1 ID=mRNA_M-pyrifera_M_contig11079.2270.1|Name=mRNA_M-pyrifera_M_contig11079.2270.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=473bp|location=Sequence derived from alignment at M-pyrifera_M_contig11079:7570..8042+ (Macrocystis pyrifera P11B4 male)
GGATTTTCGGTGGCATTTAACCATGCTGTCCGAGGCAACGGACCTCAGAG
AGCAACGGACCTCGGAGAGGAGGTGGGCCGGGGTCGTCAGGTTCCGCAGC
ATCTTGCTGCTTACAGTCGATGCCATTGGATCGATTTAAACATGTGTGTG
GGTGTGGACGTTTATTTTCCGTGGGCGAGGCTTGTGGTTACGTTACGGGG
AGTCTCGATGCACGCCGATGGTATGTACGCCCTGCGAGAGCGGCCGATAC
ACACATCAAGGGCGATGCTAAAAAGGTTTTGTGTTCTGCTGTACCAGGTA
CCAGCTATTTGCATACGCACGTGTATACGTAAACGAGGTACGCGCGTGCG
TGAACGGAGCAAGCGCGCTTGCAAGCTAGGGAGAGGGAGAGAGAGGGCTG
TTTCGAGGAACTGCTCTGCTGGCTGTTGTTCTCGAGACTCGTTGAGTAAC
ATCAGTAATCCGATCTATTTATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11079:7570..8042+

>mRNA_M-pyrifera_M_contig11079.2270.1 ID=mRNA_M-pyrifera_M_contig11079.2270.1|Name=mRNA_M-pyrifera_M_contig11079.2270.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig11079:7570..8042+ (Macrocystis pyrifera P11B4 male)
GGATTTTCGGTGGCATTTAACCATGCTGTCCGAGGCAACGGACCTCAGAG
AGCAACGGACCTCGGAGAGGAGGTGGGCCGGGGTCGTCAGGTTCCGCAGC
ATCTTGCTGCTTACAGTCGATGCCATTGGATCGATTTAAACATGTGTGTG
GGTGTGGACGTTTATTTTCCGTGGGCGAGGCTTGTGGTTACGTTACGGGG
AGTCTCGATGCACGCCGATGGTATGTACGCCCTGCGAGAGCGGCCGATAC
ACACATCAAGGGCGATGCTAAAAAGGTTTTGTGTTCTGCTGTACCAGGTA
CCAGCTATTTGCATACGCACGTGTATACGTAAACGAGGTACGCGCGTGCG
TGAACGGAGCAAGCGCGCTTGCAAGCTAGGGAGAGGGAGAGAGAGGGCTG
TTTCGAGGAACTGCTCTGCTGGCTGTTGTTCTCGAGACTCGTTGAGTAAC
ATCAGTAATCCGATCTATTTAGGATTTTCGGTGGCATTTAACCATGCTGT
CCGAGGCAACGGACCTCAGAGAGCAACGGACCTCGGAGAGGAGGTGGGCC
GGGGTCGTCAGGTTCCGCAGCATCTTGCTGCTTACAGTCGATGCCATTGG
ATCGATTTAAACATGTGTGTGGGTGTGGACGTTTATTTTCCGTGGGCGAG
GCTTGTGGTTACGTTACGGGGAGTCTCGATGCACGCCGATGGTATGTACG
CCCTGCGAGAGCGGCCGATACACACATCAAGGGCGATGCTAAAAAGGTTT
TGTGTTCTGCTGTACCAGGTACCAGCTATTTGCATACGCACGTGTATACG
TAAACGAGGTACGCGCGTGCGTGAACGGAGCAAGCGCGCTTGCAAGCTAG
GGAGAGGGAGAGAGAGGGCTGTTTCGAGGAACTGCTCTGCTGGCTGTTGT
TCTCGAGACTCGTTGAGTAACATCAGTAATCCGATCTATTTA
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