mRNA_M-pyrifera_M_contig110785.2268.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110785.2268.1
Unique NamemRNA_M-pyrifera_M_contig110785.2268.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110785.2268.1 vs. uniprot
Match: A0A1S3IRH9_LINUN (Ubiquitin-like domain-containing CTD phosphatase 1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IRH9_LINUN)

HSP 1 Score: 75.1 bits (183), Expect = 3.260e-13
Identity = 56/149 (37.58%), Postives = 86/149 (57.72%), Query Frame = 1
Query:    4 ESRTFSLPSTTPVRELKRSVEEAFGVPIEGQKLVGLKVPKGAEGDDTALSRTKIAK--KVILMGSKVSEKLEVLAEDDPLLDALENDLEKGGEGGDEESGGKDMEIALGRVDDRVERVEVEMMDGFREGVQGTLVLDNDYTLFDHKSPG 444
            E +   L  +  V +LK ++ +A GV  E QKL+GLK      GDD  LS  K+    K+++MG++    ++VL   + + + + ND + G E   EE   KD E  L +V+ R++  +VE+++  REG +  LVLD DYTLFDH+S G
Sbjct:   14 EYKITDLDDSDTVADLKNAISKATGVLPERQKLLGLKYKGSVPGDDVQLSSLKLKPNTKIMMMGTREESLVDVLEPPEDIPNVV-NDFDVGEE---EEIEVKDREEYLNKVEKRIKSYKVEVINEPREGKK-LLVLDVDYTLFDHRSVG 157          
BLAST of mRNA_M-pyrifera_M_contig110785.2268.1 vs. uniprot
Match: K1PP44_CRAGI (Ubiquitin-like domain-containing CTD phosphatase 1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1PP44_CRAGI)

HSP 1 Score: 68.6 bits (166), Expect = 8.350e-11
Identity = 52/143 (36.36%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   16 FSLPSTTPVRELKRSVEEAFGVPIEGQKLVGLKVPKGAEGDDTALSRTKI--AKKVILMGSKVSEKLEVLAEDDPLLDALENDLEKGGEGGDEESGGKDMEIALGRVDDRVERVEVEMMDGFREGVQGTLVLDNDYTLFDHKS 438
             SLP    V +LK++ + A GV  E QKL+GLK      GDD AL+  K+  + K+++MGS+  E+L+ + E    L  + ND +      +EE   ++ E  L +++ R++  ++ +++  REG +  LVLD DYTLFDH+S
Sbjct:   21 LSLPKDATVGDLKKATQAATGVLPERQKLLGLKFKGKPPGDDVALTDMKLKPSTKIMMMGSR-EEELDKVKEVPKDLPEVVNDFDIE----EEEIAIENREEYLAKIERRIKEYKINVLNEPREGKK-LLVLDIDYTLFDHRS 157          
BLAST of mRNA_M-pyrifera_M_contig110785.2268.1 vs. uniprot
Match: A0A0K2SYW8_LEPSM (Ubiquitin-like domain-containing CTD phosphatase 1 n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2SYW8_LEPSM)

HSP 1 Score: 67.4 bits (163), Expect = 1.980e-10
Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 1
Query:    1 KESRTFSLPSTTPVRELKRSVEEAFGVPIEGQKLVGLKVPKGAEGDDTALSR--TKIAKKVILMGS--KVSEKLEVLAEDDPLLDALENDLEKGGEGGDEESGGKDMEIALGRVDDRVERVEVEMMDGFREGVQGTLVLDNDYTLFDHKSP 441
            KE R   L   T V +LK+ ++E   V  E QKL+ +K+   A GDD  LS   TK   K+++MGS  K     E++ +D P +   +NDL+   +G  EE+  ++    L ++  R++  E+ + +  R G +  LVLD DYTLFDH+SP
Sbjct:   13 KEYRIEDLNENTSVLQLKKLIQERTEVRPERQKLLNMKLNGKAPGDDILLSTLPTKNGAKIMMMGSLEKDIAATEIVPDDLPYV---KNDLDDHDDG--EETSIENRSEYLTKIQHRIDNCEIHLRNELRPGKK-LLVLDIDYTLFDHRSP 157          
BLAST of mRNA_M-pyrifera_M_contig110785.2268.1 vs. uniprot
Match: C1BRQ0_CALRO (Ubiquitin-like domain-containing CTD phosphatase 1 n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=C1BRQ0_CALRO)

HSP 1 Score: 64.3 bits (155), Expect = 1.760e-9
Identity = 54/150 (36.00%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    1 KESRTFSLPSTTPVRELKRSVEEAFGVPIEGQKLVGLKVPKGAEGDDTALSR--TKIAKKVILMGSKVSEKLEVLAEDDPLLDALENDLEKGGEGGDEESGGKDMEIALGRVDDRVERVEVEMMDGFREGVQGTLVLDNDYTLFDHKSPG 444
            KE R   +   T V +LK+ ++E   V  E QKL+ LK+     GD+  LS   TK   K+++MGS   + L  L      L  + NDL+      DEE+  +     L +V  R+E+ ++++ + FR G +  LVLD DYTLFDH+S G
Sbjct:   11 KEYRIEGISGETSVLQLKQLIQEQTEVRPERQKLLNLKLNGKPPGDEILLSSLPTKNGAKIMMMGSLEKDILASLTPPSN-LPYVRNDLDDT----DEETAVEFRPENLAKVQHRIEKCDIQIRNAFRPGKK-LLVLDIDYTLFDHRSTG 154          
BLAST of mRNA_M-pyrifera_M_contig110785.2268.1 vs. uniprot
Match: A0A5J5D246_9PERO (Ubiquitin-like domain-containing CTD phosphatase 1 n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A5J5D246_9PERO)

HSP 1 Score: 63.5 bits (153), Expect = 5.270e-9
Identity = 56/142 (39.44%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   19 SLPSTTPVRELKRSVEEAFGVPIEGQKLVGLKVPKGAEGDDTALSRTKIAK--KVILMGSKVSEKLEVLAEDDPLLDALENDLEKGGEGGDEESGGKDMEIALGRVDDRVERVEVEMMDGFREGVQGTLVLDNDYTLFDHKS 438
            SL     V +LK+S++   GV  E QKL+GLKV      D+  L   K+    K+++MG++     EVLA   P  D + ND +      DE    ++ E  L ++  RV+  +VE M+  REG +G LVLD DYTLFDHKS
Sbjct:   18 SLSEEDTVMDLKQSIKTLTGVLPERQKLLGLKVKGKPAEDEVKLGSLKLKPNTKIMMMGTREESLEEVLAPP-PENDDVVNDFDIE----DEVIEVENREENLAKIARRVKDYKVEEMNPPREG-KGLLVLDVDYTLFDHKS 153          
BLAST of mRNA_M-pyrifera_M_contig110785.2268.1 vs. uniprot
Match: A0A6I9MY65_9TELE (Ubiquitin-like domain-containing CTD phosphatase 1 n=8 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6I9MY65_9TELE)

HSP 1 Score: 62.8 bits (151), Expect = 9.530e-9
Identity = 56/142 (39.44%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   19 SLPSTTPVRELKRSVEEAFGVPIEGQKLVGLKVPKGAEGDDTALSRTKIAK--KVILMGSKVSEKLEVLAEDDPLLDALENDLEKGGEGGDEESGGKDMEIALGRVDDRVERVEVEMMDGFREGVQGTLVLDNDYTLFDHKS 438
            SL     V +LK+S++   GV  E QKL+GLKV      D+  L   K+    K+++MG++     EVLA   P  D + ND +   E  + E+     E  L ++  RV+  +VE M+  REG +G LVLD DYTLFDHKS
Sbjct:   39 SLSEEDTVMDLKQSIKSLTGVLPERQKLLGLKVKGKPAEDEVKLGSLKLKPNTKIMMMGTREESLEEVLAPP-PENDDVVNDFDIEEEVIEVEN----REENLAKIARRVKDYKVEEMNPPREG-KGLLVLDVDYTLFDHKS 174          
BLAST of mRNA_M-pyrifera_M_contig110785.2268.1 vs. uniprot
Match: A0A8C9X4X6_SANLU (Ubiquitin-like domain-containing CTD phosphatase 1 n=2 Tax=Perciformes TaxID=8111 RepID=A0A8C9X4X6_SANLU)

HSP 1 Score: 62.4 bits (150), Expect = 9.870e-9
Identity = 56/142 (39.44%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   19 SLPSTTPVRELKRSVEEAFGVPIEGQKLVGLKVPKGAEGDDTALSRTKIAK--KVILMGSKVSEKLEVLAEDDPLLDALENDLEKGGEGGDEESGGKDMEIALGRVDDRVERVEVEMMDGFREGVQGTLVLDNDYTLFDHKS 438
            SL     V +LK+S++   GV  E QKL+GLKV      D+  L   K+    K+++MG++     EVLA   P  D + ND +   E  + E+     E  L ++  RV+  +VE M+  REG +G LVLD DYTLFDHKS
Sbjct:   18 SLSEEDTVMDLKQSIKTLTGVLPERQKLLGLKVKGKPAEDEVKLGSLKLKPNTKIMMMGTREESLEEVLAPP-PENDDVVNDFDIEEEVIEVEN----REENLAKIARRVKDYKVEEMNPPREG-KGLLVLDVDYTLFDHKS 153          
BLAST of mRNA_M-pyrifera_M_contig110785.2268.1 vs. uniprot
Match: A0A8B8EXA5_CRAVI (Ubiquitin-like domain-containing CTD phosphatase 1 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EXA5_CRAVI)

HSP 1 Score: 62.4 bits (150), Expect = 1.280e-8
Identity = 46/135 (34.07%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   40 VRELKRSVEEAFGVPIEGQKLVGLKVPKGAEGDDTALS--RTKIAKKVILMGSKVSEKLEVLAEDDPLLDALENDLEKGGEGGDEESGGKDMEIALGRVDDRVERVEVEMMDGFREGVQGTLVLDNDYTLFDHKS 438
            V  LK+++++A GV  E QKL+GLK      GD+ AL+  + K + K+++MG++  E+L+ + E    L  + ND +      ++E   ++ E  L +++ R++  ++ +++  REG +  LVLD DYTLFDH+S
Sbjct:   29 VENLKKAIQDATGVLPERQKLLGLKFKGKPPGDEVALTDLKLKASTKIMMMGTR-EEELDKVKEAPKDLPEVVNDFDIE----EDEIAIENREEYLAKIERRIKEYKISVLNEPREGKK-LLVLDIDYTLFDHRS 157          
BLAST of mRNA_M-pyrifera_M_contig110785.2268.1 vs. uniprot
Match: A0A6J8CPU2_MYTCO (Ubiquitin-like domain-containing CTD phosphatase 1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8CPU2_MYTCO)

HSP 1 Score: 61.6 bits (148), Expect = 2.370e-8
Identity = 50/136 (36.76%), Postives = 80/136 (58.82%), Query Frame = 1
Query:   40 VRELKRSVEEAFGVPIEGQKLVGLKVPKGAEGDDTAL---SRTKIAKKVILMGSKVSEKLEVLAEDDPLLDALENDLEKGGEGGDEESGGKDMEIALGRVDDRVERVEVEMMDGFREGVQGTLVLDNDYTLFDHKS 438
            V +LK+ ++   GV  E QK++G+K  KG   DDT L    + K   K+++MG++  E+L+ + E  P L  + ND +      +EE   ++ E  L ++D RV+  ++E+M+  R G +  LVLD DYTLFDH+S
Sbjct:   30 VLDLKKEIKNVTGVLPERQKIMGMKF-KGKPPDDTVLLTDMKLKPNTKLMMMGTR-EEELDKVKEPPPDLPEVINDFDIE----EEEIAIENREEYLAKIDKRVKEYKIEVMNEPRPGKK-LLVLDIDYTLFDHRS 158          
BLAST of mRNA_M-pyrifera_M_contig110785.2268.1 vs. uniprot
Match: A0A210Q9C6_MIZYE (Ubiquitin-like domain-containing CTD phosphatase 1 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210Q9C6_MIZYE)

HSP 1 Score: 61.6 bits (148), Expect = 2.420e-8
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 1
Query:   16 FSLPSTTPVRELKRSVEEAFGVPIEGQKLVGLKVPKGAEGDDTALSRTKIAK--KVILMGSKVSEKLEVLAEDDPLLDALENDLEKGGEGGDEESGGKDMEIALGRVDDRVERVEVEMMDGFREGVQGTLVLDNDYTLFDHKS 438
             +L  ++ V  +K ++ +  GV  E QKL+GLK   G   DD  +S  K+    K+++MGS+  E+L+ + E    L  + ND +      ++E   ++ E  L +++ RV   ++E+ +  REG +  LVLD DYTLFDH+S
Sbjct:   22 IALTDSSTVANMKDTIYKETGVRPERQKLLGLKYKGGVPADDVVISELKLKPNTKIMMMGSR-EEELDKVKEPPTDLPEVINDFDIE----EDEIAIENREEYLSKIEKRVRDYKIEVFNPPREGKK-LLVLDIDYTLFDHRS 158          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110785.2268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S3IRH9_LINUN3.260e-1337.58Ubiquitin-like domain-containing CTD phosphatase 1... [more]
K1PP44_CRAGI8.350e-1136.36Ubiquitin-like domain-containing CTD phosphatase 1... [more]
A0A0K2SYW8_LEPSM1.980e-1036.42Ubiquitin-like domain-containing CTD phosphatase 1... [more]
C1BRQ0_CALRO1.760e-936.00Ubiquitin-like domain-containing CTD phosphatase 1... [more]
A0A5J5D246_9PERO5.270e-939.44Ubiquitin-like domain-containing CTD phosphatase 1... [more]
A0A6I9MY65_9TELE9.530e-939.44Ubiquitin-like domain-containing CTD phosphatase 1... [more]
A0A8C9X4X6_SANLU9.870e-939.44Ubiquitin-like domain-containing CTD phosphatase 1... [more]
A0A8B8EXA5_CRAVI1.280e-834.07Ubiquitin-like domain-containing CTD phosphatase 1... [more]
A0A6J8CPU2_MYTCO2.370e-836.76Ubiquitin-like domain-containing CTD phosphatase 1... [more]
A0A210Q9C6_MIZYE2.420e-833.57Ubiquitin-like domain-containing CTD phosphatase 1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110785contigM-pyrifera_M_contig110785:147..590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.2
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog69293.ENSGACP00000027050
Preferred nameUBLCP1
KEGG koko:K17618
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0031974,GO:0031981,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.Ubiquitin-like domain containing CTD phosphatase 1
EggNOG OGs38FHF@33154,3BFJN@33208,3CV9Z@33213,48AQW@7711,48XHM@7742,49UNU@7898,COG5190@1,KOG1605@2759,KOG1872@1,KOG1872@2759
EC3.1.3.16
COG Functional cat.KO
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.9146912-CDS-M-pyrifera_M_contig110785:146..5901622815619.9146912-CDS-M-pyrifera_M_contig110785:146..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110785 147..590 +
1692277490.7224216-CDS-M-pyrifera_M_contig110785:146..5901692277490.7224216-CDS-M-pyrifera_M_contig110785:146..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110785 147..590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110785.2268.1prot_M-pyrifera_M_contig110785.2268.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110785 147..590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110785.2268.1

>prot_M-pyrifera_M_contig110785.2268.1 ID=prot_M-pyrifera_M_contig110785.2268.1|Name=mRNA_M-pyrifera_M_contig110785.2268.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
KESRTFSLPSTTPVRELKRSVEEAFGVPIEGQKLVGLKVPKGAEGDDTAL
SRTKIAKKVILMGSKVSEKLEVLAEDDPLLDALENDLEKGGEGGDEESGG
KDMEIALGRVDDRVERVEVEMMDGFREGVQGTLVLDNDYTLFDHKSPG
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mRNA from alignment at M-pyrifera_M_contig110785:147..590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110785.2268.1 ID=mRNA_M-pyrifera_M_contig110785.2268.1|Name=mRNA_M-pyrifera_M_contig110785.2268.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig110785:147..590+ (Macrocystis pyrifera P11B4 male)
AAGGAATCACGGACGTTTTCCCTCCCATCAACAACTCCAGTGCGCGAGTT GAAGCGGAGTGTGGAAGAAGCGTTTGGTGTTCCGATAGAGGGGCAAAAGT TGGTGGGATTGAAAGTGCCCAAAGGTGCGGAGGGGGATGACACAGCTCTG TCACGGACGAAAATTGCAAAGAAGGTGATTTTGATGGGCTCAAAGGTGTC TGAGAAGTTGGAGGTACTCGCAGAAGATGACCCTTTGTTGGATGCATTGG AGAATGATCTAGAAAAAGGAGGAGAGGGTGGGGATGAAGAGAGTGGTGGG AAAGACATGGAAATTGCCCTGGGGAGGGTGGATGATCGCGTGGAGCGAGT GGAGGTGGAAATGATGGATGGATTTCGGGAAGGAGTGCAAGGTACTTTGG TGTTGGACAATGACTATACTCTTTTTGATCACAAATCCCCCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110785:147..590+

>mRNA_M-pyrifera_M_contig110785.2268.1 ID=mRNA_M-pyrifera_M_contig110785.2268.1|Name=mRNA_M-pyrifera_M_contig110785.2268.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig110785:147..590+ (Macrocystis pyrifera P11B4 male)
AAGGAATCACGGACGTTTTCCCTCCCATCAACAACTCCAGTGCGCGAGTT
GAAGCGGAGTGTGGAAGAAGCGTTTGGTGTTCCGATAGAGGGGCAAAAGT
TGGTGGGATTGAAAGTGCCCAAAGGTGCGGAGGGGGATGACACAGCTCTG
TCACGGACGAAAATTGCAAAGAAGGTGATTTTGATGGGCTCAAAGGTGTC
TGAGAAGTTGGAGGTACTCGCAGAAGATGACCCTTTGTTGGATGCATTGG
AGAATGATCTAGAAAAAGGAGGAGAGGGTGGGGATGAAGAGAGTGGTGGG
AAAGACATGGAAATTGCCCTGGGGAGGGTGGATGATCGCGTGGAGCGAGT
GGAGGTGGAAATGATGGATGGATTTCGGGAAGGAGTGCAAGGTACTTTGG
TGTTGGACAATGACTATACTCTTTTTGATCACAAATCCCCCGGCAAGGAA
TCACGGACGTTTTCCCTCCCATCAACAACTCCAGTGCGCGAGTTGAAGCG
GAGTGTGGAAGAAGCGTTTGGTGTTCCGATAGAGGGGCAAAAGTTGGTGG
GATTGAAAGTGCCCAAAGGTGCGGAGGGGGATGACACAGCTCTGTCACGG
ACGAAAATTGCAAAGAAGGTGATTTTGATGGGCTCAAAGGTGTCTGAGAA
GTTGGAGGTACTCGCAGAAGATGACCCTTTGTTGGATGCATTGGAGAATG
ATCTAGAAAAAGGAGGAGAGGGTGGGGATGAAGAGAGTGGTGGGAAAGAC
ATGGAAATTGCCCTGGGGAGGGTGGATGATCGCGTGGAGCGAGTGGAGGT
GGAAATGATGGATGGATTTCGGGAAGGAGTGCAAGGTACTTTGGTGTTGG
ACAATGACTATACTCTTTTTGATCACAAATCCCCCGGC
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