mRNA_M-pyrifera_M_contig98483.22676.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98483.22676.1
Unique NamemRNA_M-pyrifera_M_contig98483.22676.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98483.22676.1 vs. uniprot
Match: UPI001EB02CCD (circularly permutated Ras protein 1-like isoform X1 n=3 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB02CCD)

HSP 1 Score: 77.8 bits (190), Expect = 2.020e-13
Identity = 45/116 (38.79%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   19 LPFQVQVRFRRQSDGLELIRVITETKEVTRDREVAEKSVDLKVIGTHAAKQSATLAMAGEYSQARGYAFKAKEFLRKVKSNAANDSDRAEQESGYVNFKKNIFTMEESLQAAQRQE 366
            LPFQ+Q+R+   ++G++ +RV+T+TK VT DR++AEK++DL V+GTHAA+++A LA+ GEY+ +RG A   +    +    A    D+   ++ Y      I T+E  +  AQ  E
Sbjct:  584 LPFQLQIRYT-DTEGMKALRVLTQTKPVTHDRDLAEKNIDLNVLGTHAAQKTANLALEGEYTMSRGAALMNQRLAWRSAQRAEGGPDK---KAWYRRIFSKIQTVENHVSKAQMSE 695          
BLAST of mRNA_M-pyrifera_M_contig98483.22676.1 vs. uniprot
Match: UPI001EE54EC5 (circularly permutated Ras protein 1-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE54EC5)

HSP 1 Score: 76.3 bits (186), Expect = 6.840e-13
Identity = 37/68 (54.41%), Postives = 57/68 (83.82%), Query Frame = 1
Query:   19 LPFQVQVRFRRQSDGLELIRVITETKEVTRDREVAEKSVDLKVIGTHAAKQSATLAMAGEYSQARGYA 222
            LPFQ+Q+R+   ++G++ +RV+T+T+ VT DR+VAEK+VDL V+GTHAA+++A LA+ GEY+ +RG A
Sbjct:  552 LPFQLQIRYT-DTEGMKALRVLTQTRPVTHDRDVAEKNVDLNVLGTHAAQKTANLALDGEYTMSRGAA 618          
BLAST of mRNA_M-pyrifera_M_contig98483.22676.1 vs. uniprot
Match: A0A8J1YAD6_OWEFU (Ofus.G2017 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1YAD6_OWEFU)

HSP 1 Score: 73.9 bits (180), Expect = 4.380e-12
Identity = 70/193 (36.27%), Postives = 103/193 (53.37%), Query Frame = 1
Query:    1 DDSLTSLPFQVQVRFRRQSDGLELIRVITETKEVTRDREVAEKSVDLKVIGTHAAKQSATLAMAGEYSQARGYAFKAKEFLRKVKSNAANDSDRAEQESGYVNFKKNIFTMEESLQAAQRQE-VDEGACLSDSDDDDDWGDDSSNLEAHRAKEAAKLGK---------KKAKLQSRKKKR----SDSTATNVY 537
            DD LT LPFQ+Q+ +   ++G + +RV++  K VT+DR VAEK++DLK++GT+AA+ SA LA  GEYS++R ++   +  + +     A   D++ +   Y  +  ++  MEE +  AQ  E    G   SD     D G D  + EA  A   A  GK         KKA L  + K R    SDS AT +Y
Sbjct:  599 DDDLTELPFQLQINYT-DTNGAQALRVLSMVKPVTKDRNVAEKNMDLKLLGTNAAQMSARLATEGEYSRSRLHSMMHQRLMSR-----ATKKDKSSR-GIYKAWFSHVAPMEEHINRAQTSERTAYGRSYSD-----DEGPDEIHEEADCADMVAPPGKGNSAPPRSKKKALLAMKSKSRRGECSDSMATVIY 779          
BLAST of mRNA_M-pyrifera_M_contig98483.22676.1 vs. uniprot
Match: A0A2T7P5Z8_POMCA (VWFA domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7P5Z8_POMCA)

HSP 1 Score: 72.0 bits (175), Expect = 2.040e-11
Identity = 46/118 (38.98%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   19 LPFQVQVRFRRQSDGLELIRVITETKEVTRDREVAEKSVDLKVIGTHAAKQSATLAMAGEYSQARGYAFKAKEFL-RKVKSNAANDSDRAEQESGYVNFKKNIFTMEESLQAAQRQEV 369
            LPFQ+Q+++   +DG + +RV+T+ K VT DR++AE+  ++ VIG HAA+ S+ LA+ GEYS++RG A   +    R   S+ +  SD  E    Y     ++ T+E S+Q  Q++EV
Sbjct:  622 LPFQLQIQYT-DADGTKALRVLTQKKPVTHDRQLAEEMANVGVIGVHAARLSSDLALQGEYSRSRGVALMHQRLAWRSCHSSRSTSSD--ENLQAYRTVVSHLKTVENSVQQKQQREV 736          
BLAST of mRNA_M-pyrifera_M_contig98483.22676.1 vs. uniprot
Match: UPI00065BCDAD (circularly permutated Ras protein 1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065BCDAD)

HSP 1 Score: 68.6 bits (166), Expect = 3.230e-10
Identity = 56/187 (29.95%), Postives = 96/187 (51.34%), Query Frame = 1
Query:   13 TSLPFQVQVRFRRQSDGLELIRVITETKEVTRDREVAEKSVDLKVIGTHAAKQSATLAMAGEYSQARGYAFKAKEFLRKVKSNAANDSDRAEQESGYVNFKKNIFTMEESLQAAQRQEVDEGACLSDSDDDDDWG-------DDSSNLEAHRA-KEAAKLGKKKAKLQS-RKKKRSDSTATNVYGFK 546
            T LPFQ+Q+ +   ++G + +RVIT +  VT +R  AE+ ++++V+G HAAK +A +A+ G+YS++RG +   +    +  +      DR E +  Y N    +  ME  +Q  Q+ EV         D+D D+G        D+    +HR  +    + +K  ++ S R K+  D  A  VY F+
Sbjct:  582 TDLPFQLQIEYT-DTEGNQALRVITRSMPVTSERTQAERHMNMEVLGVHAAKTAADMALKGKYSRSRGISLMNQRLAWRHSNEQEGVQDRKESKGMYKNIFGKLRRMENMVQRQQQSEVFSHGRTHSDDEDFDYGIKPAEGVPDTKKEHSHRKPRSKGSMARKNKRMHSERSKEMEDDMAHMVYQFR 767          
BLAST of mRNA_M-pyrifera_M_contig98483.22676.1 vs. uniprot
Match: UPI001B88B5EA (uncharacterized protein LOC121370501 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88B5EA)

HSP 1 Score: 67.4 bits (163), Expect = 7.990e-10
Identity = 45/118 (38.14%), Postives = 72/118 (61.02%), Query Frame = 1
Query:   13 TSLPFQVQVRFRRQSDGLELIRVITETKEVTRDREVAEKSVDLKVIGTHAAKQSATLAMAGEYSQARGYAFKAKEFLRKVKSNAANDSDRAEQESGYVNFKKNIFTMEESLQAAQRQE 366
            + LPFQ+QV +   +DG + +RV+T+ K VT+DR VAE++V+L V+G H A+ SA LA+ GEY+ +RG+A        ++   A   S +  ++S Y      I T+E ++  AQ+ E
Sbjct:  617 SELPFQLQVCYT-DTDGTKALRVLTQLKPVTQDRNVAEQNVNLDVLGLHTAQHSAQLALDGEYTMSRGHAL----MNHRLAWRAVQSSPQ--KKSWYKKIFSKIQTVENAVGNAQQSE 727          
BLAST of mRNA_M-pyrifera_M_contig98483.22676.1 vs. uniprot
Match: A0A6J8BR50_MYTCO (VWFA domain-containing protein n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8BR50_MYTCO)

HSP 1 Score: 67.0 bits (162), Expect = 1.100e-9
Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   19 LPFQVQVRFRRQSDGLELIRVITETKEVTRDREVAEKSVDLKVIGTHAAKQSATLAMAGEYSQARGYAFKAKEFLRKVKSNAANDSD-RAEQESGYVNFKKNIFTMEESLQAAQRQEV 369
            LPFQ+Q+++   ++G   +RV+T+TK +TRDR+ AE   +++VIG H  K +A+LA+ G Y+  R  A   +  L + K +    S+ R+E    Y N    +  +E  +  AQ++E+
Sbjct:  638 LPFQLQIKYT-DTEGATALRVLTQTKPITRDRKQAEGRTNVQVIGAHVQKSTASLALEGRYTDTRSKAMMNQRLLWRHKKSCPKGSETRSEAGEMYNNIFTTVSKLENKVNVAQKKEM 754          
BLAST of mRNA_M-pyrifera_M_contig98483.22676.1 vs. uniprot
Match: A0A0B7ACB8_9EUPU (VWFA domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7ACB8_9EUPU)

HSP 1 Score: 65.9 bits (159), Expect = 2.630e-9
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    7 SLTSLPFQVQVRFRRQSDGLELIRVITETKEVTRDREVAEKSVDLKVIGTHAAKQSATLAMAGEYSQARGYAFKAKEFL-RKVKSNAANDSDRAEQESGYVNFKKNIFTMEESLQAAQRQEV 369
            ++   PFQ+Q+ +   ++G + +RVIT T   T  R++ E++ +L V+G HAAK+SA LA+ G++S++R  A   +    R   SNAA+DSDR      Y      I  ME ++ +  +QE+
Sbjct:  528 AIMDFPFQLQIEYI-DTEGNKALRVITRTMPATTQRKMTEENANLNVLGVHAAKKSAELALQGQFSRSRSVALMNQRLAWRHSHSNAASDSDR----KAYKAIYGQIQQMENTVHSQLKQEI 644          
BLAST of mRNA_M-pyrifera_M_contig98483.22676.1 vs. uniprot
Match: A0A1S3K210_LINUN (uncharacterized protein LOC106178153 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K210_LINUN)

HSP 1 Score: 65.5 bits (158), Expect = 3.860e-9
Identity = 42/119 (35.29%), Postives = 73/119 (61.34%), Query Frame = 1
Query:   10 LTSLPFQVQVRFRRQSDGLELIRVITETKEVTRDREVAEKSVDLKVIGTHAAKQSATLAMAGEYSQARGYAFKAKEFLRKVKSNAANDSDRAEQESGYVNFKKNIFTMEESLQAAQRQE 366
            L+ LPFQ+Q+++    +G + +RV+T++K +T+DR VAE+ ++L+VIG H A+ +A LA+ G+Y+ +R  AF  +  + +      N S RA     Y  F  NI  +E+++ A  + E
Sbjct:  914 LSELPFQLQIKYT-DLEGSQAMRVLTQSKPITKDRNVAEREMNLQVIGAHTAQTTARLALQGDYTASRLNAFTKQRLVSR--HTKTNTSARA----AYRQFFCNIAPIEQTVNAQLQSE 1025          
BLAST of mRNA_M-pyrifera_M_contig98483.22676.1 vs. uniprot
Match: A0A433TBN3_ELYCH (VWFA domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TBN3_ELYCH)

HSP 1 Score: 58.9 bits (141), Expect = 6.690e-7
Identity = 30/78 (38.46%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   16 SLPFQVQVRFRRQSDGLELIRVITETKEVTRDREVAEKSVDLKVIGTHAAKQSATLAMAGEYSQARGYAFKAKEFLRK 249
            ++PFQVQ+ + R SDG++ +RV++++ E TRDR+  E+++++ V+G  A K +A LA AG+  QA+ +    K  +R+
Sbjct:  719 NVPFQVQIVYTRNSDGMKCMRVLSKSTEATRDRQRMEENINVAVMGVAAMKTTANLAKAGKGKQAQQHLKNVKRLVRR 796          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98483.22676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
UPI001EB02CCD2.020e-1338.79circularly permutated Ras protein 1-like isoform X... [more]
UPI001EE54EC56.840e-1354.41circularly permutated Ras protein 1-like n=1 Tax=H... [more]
A0A8J1YAD6_OWEFU4.380e-1236.27Ofus.G2017 protein n=1 Tax=Owenia fusiformis TaxID... [more]
A0A2T7P5Z8_POMCA2.040e-1138.98VWFA domain-containing protein n=1 Tax=Pomacea can... [more]
UPI00065BCDAD3.230e-1029.95circularly permutated Ras protein 1 n=1 Tax=Aplysi... [more]
UPI001B88B5EA7.990e-1038.14uncharacterized protein LOC121370501 n=1 Tax=Gigan... [more]
A0A6J8BR50_MYTCO1.100e-933.90VWFA domain-containing protein n=3 Tax=Mytilus Tax... [more]
A0A0B7ACB8_9EUPU2.630e-935.25VWFA domain-containing protein n=1 Tax=Arion vulga... [more]
A0A1S3K210_LINUN3.860e-935.29uncharacterized protein LOC106178153 n=1 Tax=Lingu... [more]
A0A433TBN3_ELYCH6.690e-738.46VWFA domain-containing protein n=1 Tax=Elysia chlo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98483contigM-pyrifera_M_contig98483:15..560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score79.7
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog400682.PAC_15727872
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Circularly permutated Ras protein 1-like
EggNOG OGs29A2H@1,2RH4Z@2759,3A03H@33154,3BPRZ@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.152409-CDS-M-pyrifera_M_contig98483:14..5601622816902.152409-CDS-M-pyrifera_M_contig98483:14..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98483 15..560 +
1692278245.5587564-CDS-M-pyrifera_M_contig98483:14..5601692278245.5587564-CDS-M-pyrifera_M_contig98483:14..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98483 15..560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98483.22676.1prot_M-pyrifera_M_contig98483.22676.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98483 15..560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98483.22676.1

>prot_M-pyrifera_M_contig98483.22676.1 ID=prot_M-pyrifera_M_contig98483.22676.1|Name=mRNA_M-pyrifera_M_contig98483.22676.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
DDSLTSLPFQVQVRFRRQSDGLELIRVITETKEVTRDREVAEKSVDLKVI
GTHAAKQSATLAMAGEYSQARGYAFKAKEFLRKVKSNAANDSDRAEQESG
YVNFKKNIFTMEESLQAAQRQEVDEGACLSDSDDDDDWGDDSSNLEAHRA
KEAAKLGKKKAKLQSRKKKRSDSTATNVYGFK
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mRNA from alignment at M-pyrifera_M_contig98483:15..560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98483.22676.1 ID=mRNA_M-pyrifera_M_contig98483.22676.1|Name=mRNA_M-pyrifera_M_contig98483.22676.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig98483:15..560+ (Macrocystis pyrifera P11B4 male)
GACGACAGCCTCACTTCGTTGCCATTCCAGGTCCAGGTGCGCTTCAGGCG ACAGTCTGATGGCTTGGAGCTGATCAGAGTTATCACCGAGACAAAGGAGG TCACAAGAGACAGAGAGGTTGCAGAGAAGAGCGTGGACCTGAAGGTGATT GGCACCCATGCAGCCAAGCAAAGTGCCACACTTGCCATGGCAGGAGAGTA CTCTCAGGCTCGTGGCTACGCATTCAAGGCCAAGGAGTTCCTGCGTAAGG TCAAGTCGAACGCTGCCAACGATTCAGACCGCGCAGAGCAGGAGTCTGGC TACGTCAACTTCAAGAAGAACATCTTCACCATGGAAGAGTCTTTGCAGGC TGCCCAGAGGCAGGAAGTAGACGAGGGTGCTTGCCTCAGTGATAGCGATG ACGACGATGACTGGGGCGACGACTCCTCCAACCTGGAAGCGCATCGTGCA AAGGAGGCGGCCAAGCTGGGAAAGAAGAAGGCGAAGCTCCAGAGCAGGAA GAAGAAGCGCTCCGACAGCACTGCCACCAACGTTTATGGCTTCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98483:15..560+

>mRNA_M-pyrifera_M_contig98483.22676.1 ID=mRNA_M-pyrifera_M_contig98483.22676.1|Name=mRNA_M-pyrifera_M_contig98483.22676.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig98483:15..560+ (Macrocystis pyrifera P11B4 male)
GACGACAGCCTCACTTCGTTGCCATTCCAGGTCCAGGTGCGCTTCAGGCG
ACAGTCTGATGGCTTGGAGCTGATCAGAGTTATCACCGAGACAAAGGAGG
TCACAAGAGACAGAGAGGTTGCAGAGAAGAGCGTGGACCTGAAGGTGATT
GGCACCCATGCAGCCAAGCAAAGTGCCACACTTGCCATGGCAGGAGAGTA
CTCTCAGGCTCGTGGCTACGCATTCAAGGCCAAGGAGTTCCTGCGTAAGG
TCAAGTCGAACGCTGCCAACGATTCAGACCGCGCAGAGCAGGAGTCTGGC
TACGTCAACTTCAAGAAGAACATCTTCACCATGGAAGAGTCTTTGCAGGC
TGCCCAGAGGCAGGAAGTAGACGAGGGTGCTTGCCTCAGTGATAGCGATG
ACGACGATGACTGGGGCGACGACTCCTCCAACCTGGAAGCGCATCGTGCA
AAGGAGGCGGCCAAGCTGGGAAAGAAGAAGGCGAAGCTCCAGAGCAGGAA
GAAGAAGCGCTCCGACAGCACTGCCACCAACGTTTATGGCTTCAAGGACG
ACAGCCTCACTTCGTTGCCATTCCAGGTCCAGGTGCGCTTCAGGCGACAG
TCTGATGGCTTGGAGCTGATCAGAGTTATCACCGAGACAAAGGAGGTCAC
AAGAGACAGAGAGGTTGCAGAGAAGAGCGTGGACCTGAAGGTGATTGGCA
CCCATGCAGCCAAGCAAAGTGCCACACTTGCCATGGCAGGAGAGTACTCT
CAGGCTCGTGGCTACGCATTCAAGGCCAAGGAGTTCCTGCGTAAGGTCAA
GTCGAACGCTGCCAACGATTCAGACCGCGCAGAGCAGGAGTCTGGCTACG
TCAACTTCAAGAAGAACATCTTCACCATGGAAGAGTCTTTGCAGGCTGCC
CAGAGGCAGGAAGTAGACGAGGGTGCTTGCCTCAGTGATAGCGATGACGA
CGATGACTGGGGCGACGACTCCTCCAACCTGGAAGCGCATCGTGCAAAGG
AGGCGGCCAAGCTGGGAAAGAAGAAGGCGAAGCTCCAGAGCAGGAAGAAG
AAGCGCTCCGACAGCACTGCCACCAACGTTTATGGCTTCAAG
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