mRNA_M-pyrifera_M_contig98474.22673.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98474.22673.1
Unique NamemRNA_M-pyrifera_M_contig98474.22673.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig98474.22673.1 vs. uniprot
Match: F0ZMK0_DICPU (Transcription initiation factor TFIID subunit 2 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZMK0_DICPU)

HSP 1 Score: 158 bits (399), Expect = 2.450e-41
Identity = 75/162 (46.30%), Postives = 104/162 (64.20%), Query Frame = 1 
Query:   73 SFHFELNVPTAAEDIGFACGPFEVLPDARIPLVTHFCLPGGMPVLQHTTASYGDVHQFMEDYLGNSYPYESYKQVFVDGCSPEGMAFAGLTIMDKSAMHDSSIIDDAYVTRLLQARLLGEQWFGCFTMPKAWADNWLRFGLSAHLMSIYAKKTFGGNETRYQ 558
            +F +  ++PTAA  IGF  GPFE+ PD  +  VTHFCLP  +  L+H+   +  ++QF E+YLG S+PY SYKQVFV+    +  ++A L+I++   +H  +IID  + TR + A+ L  QWFG +  PK WAD WL  GLS HL + + KK FG NE RYQ
Sbjct:  263 TFIYRQDIPTAANAIGFCVGPFEIYPDPYLANVTHFCLPHKLTELKHSIHFFHQIYQFYEEYLGASFPYSSYKQVFVEDILHQSSSYATLSILNSHLLHGPTIIDQTFETRKIIAKALTIQWFGLYLSPKTWADVWLFLGLSGHLANQFTKKHFGLNEYRYQ 424
[Close]
BLAST of mRNA_M-pyrifera_M_contig98474.22673.1 vs. uniprot
Match: C7G081_DICDI (Transcription initiation factor TFIID subunit 2 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=C7G081_DICDI)

HSP 1 Score: 156 bits (395), Expect = 8.510e-41
Identity = 74/161 (45.96%), Postives = 103/161 (63.98%), Query Frame = 1 
Query:   73 SFHFELNVPTAAEDIGFACGPFEVLPDARIPLVTHFCLPGGMPVLQHTTASYGDVHQFMEDYLGNSYPYESYKQVFVDGCSPEGMAFAGLTIMDKSAMHDSSIIDDAYVTRLLQARLLGEQWFGCFTMPKAWADNWLRFGLSAHLMSIYAKKTFGGNETRY 555
            +F +  ++PT+A  IGF  GPFE+ PD  +P VTHFCLP  +  L+H+   +  ++QF E+YLG S+PY SYKQVFV+       ++A L+I++   +H  +IID  + TR L A+ L  QWFG +  PK W+D WL  GLS +L S + KK FG NE RY
Sbjct:  266 TFIYRQDIPTSANAIGFCVGPFEIYPDPYLPNVTHFCLPHKLTELKHSVHFFHQIYQFYEEYLGASFPYSSYKQVFVEDTLQPASSYATLSILNSHLLHGPTIIDQTFETRKLIAKALTLQWFGLYLSPKTWSDAWLFLGLSGYLASQFTKKHFGLNEYRY 426
[Close]
BLAST of mRNA_M-pyrifera_M_contig98474.22673.1 vs. uniprot
Match: UPI000D7277B9 (LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 2-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D7277B9)

HSP 1 Score: 155 bits (393), Expect = 1.520e-40
Identity = 73/161 (45.34%), Postives = 105/161 (65.22%), Query Frame = 1 
Query:   73 SFHFELNVPTAAEDIGFACGPFEVLPDARIPLVTHFCLPGGMPVLQHTTASYGDVHQFMEDYLGNSYPYESYKQVFVDGCSPEGMAFAGLTIMDKSAMHDSSIIDDAYVTRLLQARLLGEQWFGCFTMPKAWADNWLRFGLSAHLMSIYAKKTFGGNETRY 555
            ++H+ L+ PT+A +I  A GPFE L D  +  VTHFCLP  M VL+HTT+      +F E+ + + YPY  YKQVFVD    +G A+A ++I+  + +H + IID   +TR + ARL+ EQ+FGCF   ++WAD WL  G++ +L  ++ KKTFG NE RY
Sbjct:  221 TYHYFLSTPTSAPNIALAVGPFETLVDPNMHEVTHFCLPHLMSVLKHTTSYLHQSFEFYEELMSSRYPYGCYKQVFVDESYVDGAAYATMSILSTNLLHSARIIDQTLITRRIMARLVAEQFFGCFISMQSWADAWLTKGIAGYLSCLFQKKTFGNNEYRY 381
[Close]
BLAST of mRNA_M-pyrifera_M_contig98474.22673.1 vs. uniprot
Match: A0A6J2X976_SITOR (Transcription initiation factor TFIID subunit 2 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2X976_SITOR)

HSP 1 Score: 152 bits (384), Expect = 2.450e-39
Identity = 71/160 (44.38%), Postives = 102/160 (63.75%), Query Frame = 1 
Query:   73 SFHFELNVPTAAEDIGFACGPFEVLPDARIPLVTHFCLPGGMPVLQHTTASYGDVHQFMEDYLGNSYPYESYKQVFVDGCSPEGMAFAGLTIMDKSAMHDSSIIDDAYVTRLLQARLLGEQWFGCFTMPKAWADNWLRFGLSAHLMSIYAKKTFGGNETR 552
            ++H+ LNVPT A +I  A GPFE+  D  +  VTHFCLPG MP+L+ TT    +  +F E+ L N YPY  YKQVFVD    +  ++A ++I+  + +H + IID  ++TR   A+ + EQ+FGCF   + W+D WL  G+S +L  +Y KK+FG NE R
Sbjct:  227 TYHYSLNVPTCAPNISLAVGPFEIFVDPYMHEVTHFCLPGLMPLLKVTTRYMHETFEFYEETLSNRYPYSCYKQVFVDEAYEDYHSYATMSILSVNLLHSAVIIDQVFITRKAMAQAIAEQFFGCFISMQNWSDLWLNKGISQYLCGLYCKKSFGNNEYR 386
[Close]
BLAST of mRNA_M-pyrifera_M_contig98474.22673.1 vs. uniprot
Match: UPI001F032E47 (transcription initiation factor TFIID subunit 2-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F032E47)

HSP 1 Score: 151 bits (382), Expect = 4.360e-39
Identity = 73/159 (45.91%), Postives = 102/159 (64.15%), Query Frame = 1 
Query:   76 FHFELNVPTAAEDIGFACGPFEVLPDARIPLVTHFCLPGGMPVLQHTTASYGDVHQFMEDYLGNSYPYESYKQVFVDGCSPEGMAFAGLTIMDKSAMHDSSIIDDAYVTRLLQARLLGEQWFGCFTMPKAWADNWLRFGLSAHLMSIYAKKTFGGNETR 552
            + + L+VPTAA +I FA GPFEV  D  +P V HFCLPG +P+L+ TT S  +V +F E+ +   +PY SYKQVFVD    E  ++A L I   + +H S +ID A+ TR + AR L  Q+FGC+     W+D+WL+ G++ +L  +Y KK FG NE R
Sbjct:   63 YSYVLDVPTAASNIAFAVGPFEVHVDPVMPEVAHFCLPGLLPLLKQTTGSLHEVLEFYEESMSCQFPYPSYKQVFVDHSFEETSSYATLAICSTNLLHSSRVIDQAFYTRKILARALARQFFGCYLSLNTWSDSWLQGGITYYLYGLYMKKAFGNNEYR 221
[Close]
BLAST of mRNA_M-pyrifera_M_contig98474.22673.1 vs. uniprot
Match: A0A834IQU4_RHYFE (Transcription initiation factor TFIID subunit 2 n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834IQU4_RHYFE)

HSP 1 Score: 151 bits (382), Expect = 4.550e-39
Identity = 71/160 (44.38%), Postives = 102/160 (63.75%), Query Frame = 1 
Query:   73 SFHFELNVPTAAEDIGFACGPFEVLPDARIPLVTHFCLPGGMPVLQHTTASYGDVHQFMEDYLGNSYPYESYKQVFVDGCSPEGMAFAGLTIMDKSAMHDSSIIDDAYVTRLLQARLLGEQWFGCFTMPKAWADNWLRFGLSAHLMSIYAKKTFGGNETR 552
            ++H+ LNVPT A +I  A GPFE+  D  +  VTHFCLPG +P+L+ TT    +  +F E+ L N YPY  YKQVFVD    +  ++A ++I+  + +H + IID  Y+TR   A+ + EQ+FGCF   + W+D WL  G+S +L  +Y KK+FG NE R
Sbjct:  233 TYHYTLNVPTCAPNISLAVGPFEIYVDPYMHEVTHFCLPGLLPLLKVTTRYMHEAFEFYEETLSNRYPYSCYKQVFVDESYEDFHSYATMSILSVNLLHSAVIIDQVYITRKSMAQAIAEQFFGCFISMQNWSDMWLNKGISQYLCGLYCKKSFGNNEYR 392
[Close]
BLAST of mRNA_M-pyrifera_M_contig98474.22673.1 vs. uniprot
Match: UPI001CF185E8 (LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 2-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF185E8)

HSP 1 Score: 149 bits (377), Expect = 2.120e-38
Identity = 70/161 (43.48%), Postives = 103/161 (63.98%), Query Frame = 1 
Query:   73 SFHFELNVPTAAEDIGFACGPFEVLPDARIPLVTHFCLPGGMPVLQHTTASYGDVHQFMEDYLGNSYPYESYKQVFVDGCSPEGMAFAGLTIMDKSAMHDSSIIDDAYVTRLLQARLLGEQWFGCFTMPKAWADNWLRFGLSAHLMSIYAKKTFGGNETRY 555
            ++H+ L++PT+A +I  A GPFE+  D  +P VTHFCLPG +PVL++TT+   +  +F E+YL   YPY  YKQVFVD        ++ +TI + S +H S IID  + TR   ++ L EQ+FGC+   + W+D WL  G+S +L  ++ KK FG NE R+
Sbjct:  232 TYHYTLSIPTSAPNIALAVGPFEIYVDPVMPEVTHFCLPGLLPVLKNTTSFLHEAFEFYEEYLCCRYPYAHYKQVFVDQAYDILSPYSSMTIFNTSLLHSSRIIDQGFQTRKFLSQALAEQFFGCYLCIQTWSDLWLARGISGYLFGLFMKKMFGNNEYRH 392
[Close]
BLAST of mRNA_M-pyrifera_M_contig98474.22673.1 vs. uniprot
Match: UPI00106C2701 (transcription initiation factor TFIID subunit 2-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C2701)

HSP 1 Score: 145 bits (366), Expect = 6.350e-37
Identity = 71/160 (44.38%), Postives = 100/160 (62.50%), Query Frame = 1 
Query:   73 SFHFELNVPTAAEDIGFACGPFEVLPDARIPLVTHFCLPGGMPVLQHTTASYGDVHQFMEDYLGNSYPYESYKQVFVDGCSPEGMAFAGLTIMDKSAMHDSSIIDDAYVTRLLQARLLGEQWFGCFTMPKAWADNWLRFGLSAHLMSIYAKKTFGGNETR 552
            +F + L+VPTAA +I  A GPFEV  D  +P VTHFCLPG +P+L+ TT S  +V +F E+ +   +PY SYKQVFV+    E  ++A L I   + +H S +ID  + TR   A  L  Q+FGC+     W+D+WL+ G++ +L  +Y KK FG NE R
Sbjct:  227 TFSYVLDVPTAAPNIALAVGPFEVYIDPVMPEVTHFCLPGLVPLLKQTTGSLNEVFEFYEESMSCHFPYTSYKQVFVEFPFEETSSYATLAICSTNLLHSSRMIDQTFYTRKTLALALARQFFGCYLSLHTWSDSWLQAGITVYLYGLYMKKAFGNNEYR 386
[Close]
BLAST of mRNA_M-pyrifera_M_contig98474.22673.1 vs. uniprot
Match: UPI0019393BF3 (transcription initiation factor TFIID subunit 2-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019393BF3)

HSP 1 Score: 144 bits (364), Expect = 1.180e-36
Identity = 71/161 (44.10%), Postives = 101/161 (62.73%), Query Frame = 1 
Query:   73 SFHFELNVPTAAEDIGFACGPFEVLPDARIPLVTHFCLPGGMPVLQHTTASYGDVHQFMEDYLGNSYPYESYKQVFVDGCSPEGMAFAGLTIMDKSAMHDSSIIDDAYVTRLLQARLLGEQWFGCFTMPKAWADNWLRFGLSAHLMSIYAKKTFGGNETRY 555
            +FH+ L VPTAA +IG A GPFEVL D  +  VTHFCLP  +P+L+HTT +  +V +F E+ L   +PY  YKQVFVD    +  ++A L I + + +H   I+D    TR   A+++  Q+FGCF   ++W D WL  GLSA+L  ++ K  FG NE ++
Sbjct:  223 TFHYILTVPTAAPNIGLAVGPFEVLVDKHMHEVTHFCLPQLLPLLEHTTQACYEVFEFYEEILSFRFPYSCYKQVFVDEAYRDIESYASLGIFNTNLLHSKIILDQNPETRKQMAKMISNQFFGCFMARESWNDLWLPTGLSAYLQGLWVKNIFGNNEYKH 383
[Close]
BLAST of mRNA_M-pyrifera_M_contig98474.22673.1 vs. uniprot
Match: A0A3S1B3I1_ELYCH (Transcription initiation factor TFIID subunit 2 (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1B3I1_ELYCH)

HSP 1 Score: 143 bits (361), Expect = 2.680e-36
Identity = 67/161 (41.61%), Postives = 101/161 (62.73%), Query Frame = 1 
Query:   73 SFHFELNVPTAAEDIGFACGPFEVLPDARIPLVTHFCLPGGMPVLQHTTASYGDVHQFMEDYLGNSYPYESYKQVFVDGCSPEGMAFAGLTIMDKSAMHDSSIIDDAYVTRLLQARLLGEQWFGCFTMPKAWADNWLRFGLSAHLMSIYAKKTFGGNETRY 555
            ++H+ L+ P AA +I  A GPFE+L D ++  VTHFCLPG MPVL+HTT+      +F E+ + + YPY  YKQVFVD    +   ++ L+I+  + +H  +IID   V+R L A  + +Q+FG F   + W D WL  G++ +L  ++ K+TFG NE R+
Sbjct:  221 TYHYFLSTPVAAPNIALAVGPFEILVDPKMHEVTHFCLPGLMPVLKHTTSYIHQAFEFYEELMSSRYPYSYYKQVFVDMSYCDVATYSTLSILSTNLLHPPNIIDQTMVSRQLMAEAVAQQFFGSFIAMETWCDAWLTKGITGYLSYLFTKRTFGNNEYRH 381
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98474.22673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0ZMK0_DICPU2.450e-4146.30Transcription initiation factor TFIID subunit 2 n=... [more]
C7G081_DICDI8.510e-4145.96Transcription initiation factor TFIID subunit 2 n=... [more]
UPI000D7277B91.520e-4045.34LOW QUALITY PROTEIN: transcription initiation fact... [more]
A0A6J2X976_SITOR2.450e-3944.38Transcription initiation factor TFIID subunit 2 n=... [more]
UPI001F032E474.360e-3945.91transcription initiation factor TFIID subunit 2-li... [more]
A0A834IQU4_RHYFE4.550e-3944.38Transcription initiation factor TFIID subunit 2 n=... [more]
UPI001CF185E82.120e-3843.48LOW QUALITY PROTEIN: transcription initiation fact... [more]
UPI00106C27016.350e-3744.38transcription initiation factor TFIID subunit 2-li... [more]
UPI0019393BF31.180e-3644.10transcription initiation factor TFIID subunit 2-li... [more]
A0A3S1B3I1_ELYCH2.680e-3641.61Transcription initiation factor TFIID subunit 2 (F... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98474contigM-pyrifera_M_contig98474:2..559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue5.4e-37
Seed eggNOG ortholog5786.XP_003288635.1
Preferred nameTAF2
KEGG koko:K03128,ko:K10624,ko:K11728,ko:K12850,ko:K13123
KEGG Pathwayko03022,ko03040,map03022,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000123,GO:0000278,GO:0000428,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001129,GO:0001132,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022607,GO:0023051,GO:0023052,GO:0030880,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033276,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044770,GO:0044772,GO:0044798,GO:0044839,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2000142,GO:2000144,GO:2001141
EggNOG free text desc.maturation of 5S rRNA
EggNOG OGs3X8RJ@554915,KOG1932@1,KOG1932@2759,KOG2217@1,KOG2217@2759
EC2.3.2.27
COG Functional cat.K
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03036,ko03041,ko04121
Exons1
Model size558
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.0380874-CDS-M-pyrifera_M_contig98474:1..5591622816902.0380874-CDS-M-pyrifera_M_contig98474:1..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98474 2..559 -
1692278245.5077496-CDS-M-pyrifera_M_contig98474:1..5591692278245.5077496-CDS-M-pyrifera_M_contig98474:1..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98474 2..559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98474.22673.1prot_M-pyrifera_M_contig98474.22673.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98474 2..559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98474.22673.1

>prot_M-pyrifera_M_contig98474.22673.1 ID=prot_M-pyrifera_M_contig98474.22673.1|Name=mRNA_M-pyrifera_M_contig98474.22673.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
EEAPAAHEEEAVDEDEEPTFRELVSFHFELNVPTAAEDIGFACGPFEVLP
DARIPLVTHFCLPGGMPVLQHTTASYGDVHQFMEDYLGNSYPYESYKQVF
VDGCSPEGMAFAGLTIMDKSAMHDSSIIDDAYVTRLLQARLLGEQWFGCF
TMPKAWADNWLRFGLSAHLMSIYAKKTFGGNETRYQ
back to top

mRNA from alignment at M-pyrifera_M_contig98474:2..559-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98474.22673.1 ID=mRNA_M-pyrifera_M_contig98474.22673.1|Name=mRNA_M-pyrifera_M_contig98474.22673.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig98474:2..559- (Macrocystis pyrifera P11B4 male)
GAGGAAGCTCCTGCAGCGCACGAGGAAGAAGCTGTAGATGAAGACGAGGA
GCCTACTTTCAGGGAACTGGTGAGCTTCCACTTCGAGCTGAACGTGCCCA
CTGCTGCTGAGGACATTGGATTTGCGTGCGGGCCATTCGAGGTGTTGCCT
GATGCAAGAATTCCACTTGTGACTCACTTTTGCCTTCCTGGAGGTATGCC
TGTGCTGCAGCACACAACAGCGTCCTACGGTGATGTGCATCAGTTCATGG
AAGACTACCTGGGAAACTCGTACCCCTACGAGTCCTACAAGCAGGTTTTC
GTGGATGGATGTTCACCTGAGGGCATGGCGTTCGCTGGCCTGACGATCAT
GGATAAGAGTGCGATGCACGACAGCTCCATCATTGACGATGCTTATGTCA
CTCGCCTCTTGCAGGCCCGCCTACTTGGAGAGCAGTGGTTCGGCTGCTTC
ACCATGCCCAAGGCGTGGGCTGACAACTGGCTACGCTTCGGCCTCTCCGC
CCACCTCATGAGTATCTATGCCAAGAAGACCTTTGGTGGCAACGAAACAC
GCTACCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig98474:2..559-

>mRNA_M-pyrifera_M_contig98474.22673.1 ID=mRNA_M-pyrifera_M_contig98474.22673.1|Name=mRNA_M-pyrifera_M_contig98474.22673.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig98474:2..559- (Macrocystis pyrifera P11B4 male)
GAGGAAGCTCCTGCAGCGCACGAGGAAGAAGCTGTAGATGAAGACGAGGA
GCCTACTTTCAGGGAACTGGTGAGCTTCCACTTCGAGCTGAACGTGCCCA
CTGCTGCTGAGGACATTGGATTTGCGTGCGGGCCATTCGAGGTGTTGCCT
GATGCAAGAATTCCACTTGTGACTCACTTTTGCCTTCCTGGAGGTATGCC
TGTGCTGCAGCACACAACAGCGTCCTACGGTGATGTGCATCAGTTCATGG
AAGACTACCTGGGAAACTCGTACCCCTACGAGTCCTACAAGCAGGTTTTC
GTGGATGGATGTTCACCTGAGGGCATGGCGTTCGCTGGCCTGACGATCAT
GGATAAGAGTGCGATGCACGACAGCTCCATCATTGACGATGCTTATGTCA
CTCGCCTCTTGCAGGCCCGCCTACTTGGAGAGCAGTGGTTCGGCTGCTTC
ACCATGCCCAAGGCGTGGGCTGACAACTGGCTACGCTTCGGCCTCTCCGC
CCACCTCATGAGTATCTATGCCAAGAAGACCTTTGGTGGCAACGAAACAC
GCTACCAGGAGGAAGCTCCTGCAGCGCACGAGGAAGAAGCTGTAGATGAA
GACGAGGAGCCTACTTTCAGGGAACTGGTGAGCTTCCACTTCGAGCTGAA
CGTGCCCACTGCTGCTGAGGACATTGGATTTGCGTGCGGGCCATTCGAGG
TGTTGCCTGATGCAAGAATTCCACTTGTGACTCACTTTTGCCTTCCTGGA
GGTATGCCTGTGCTGCAGCACACAACAGCGTCCTACGGTGATGTGCATCA
GTTCATGGAAGACTACCTGGGAAACTCGTACCCCTACGAGTCCTACAAGC
AGGTTTTCGTGGATGGATGTTCACCTGAGGGCATGGCGTTCGCTGGCCTG
ACGATCATGGATAAGAGTGCGATGCACGACAGCTCCATCATTGACGATGC
TTATGTCACTCGCCTCTTGCAGGCCCGCCTACTTGGAGAGCAGTGGTTCG
GCTGCTTCACCATGCCCAAGGCGTGGGCTGACAACTGGCTACGCTTCGGC
CTCTCCGCCCACCTCATGAGTATCTATGCCAAGAAGACCTTTGGTGGCAA
CGAAACACGCTACCAG
back to top