mRNA_M-pyrifera_M_contig110776.2267.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110776.2267.1
Unique NamemRNA_M-pyrifera_M_contig110776.2267.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110776.2267.1 vs. uniprot
Match: A0A640KU98_LEITA (Uncharacterized protein n=1 Tax=Leishmania tarentolae TaxID=5689 RepID=A0A640KU98_LEITA)

HSP 1 Score: 66.6 bits (161), Expect = 1.530e-10
Identity = 37/99 (37.37%), Postives = 49/99 (49.49%), Query Frame = 1
Query:   28 GHSAVSYGSRSILFGGRDGNGLASKAVYTYEHELAAWQLLRAAGRSPEPRALHAAVVIGNRMVVHGGLSSTGSPLADVHVLNIDSARWSTIECGPESAP 324
            GH  V Y     +FGG +  G  S  V+ Y+ +   W  +R  G  P  RA HAAV+IGN++ VHGG  +      D+    ID+ARW  I C     P
Sbjct:   77 GHVGVCYRQDVYVFGGVNNKGQFSNHVFCYQKQTLQWHEVRGVGVVPRGRANHAAVLIGNKIYVHGGHRNL-EVFDDLFAYEIDTARWEKISCERSQGP 174          
BLAST of mRNA_M-pyrifera_M_contig110776.2267.1 vs. uniprot
Match: A0A2V0NVA9_9CHLO (ACB domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NVA9_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 2.770e-10
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 1
Query:   22 LSGHSAVSYGSRSILFGG--RDGNGLASKAVYTYEHELAAWQLLRAAGRSPEPRALHAAVVIGNRMVVHGGLSSTGSPLADVHVLNIDSARWSTIE 303
            L+GHS   +G R I+ GG  +  +  A  A    + E   W  L A G  P  R  H+A ++G+R+ V GG      PLAD+HVL++ S  WS +E
Sbjct:  254 LAGHSVTPWGGRLIVLGGHTKRKDPAAPMAARLLDPETMRWSWLEARGAPPRARGGHSATLVGHRLYVFGGEDCRRRPLADLHVLDLQSMEWSALE 349          
BLAST of mRNA_M-pyrifera_M_contig110776.2267.1 vs. uniprot
Match: E9ASR7_LEIMU (Uncharacterized protein n=1 Tax=Leishmania mexicana (strain MHOM/GT/2001/U1103) TaxID=929439 RepID=E9ASR7_LEIMU)

HSP 1 Score: 65.1 bits (157), Expect = 5.310e-10
Identity = 36/99 (36.36%), Postives = 49/99 (49.49%), Query Frame = 1
Query:   28 GHSAVSYGSRSILFGGRDGNGLASKAVYTYEHELAAWQLLRAAGRSPEPRALHAAVVIGNRMVVHGGLSSTGSPLADVHVLNIDSARWSTIECGPESAP 324
            GH  V Y     +FGG +  G  +  V+ YE     W+ +R AG  P  RA HAAV+IGN++ +HGG     +   D+    ID+ RW  I C     P
Sbjct:   68 GHVGVCYHQNVYVFGGVNSKGQFNNHVFCYEKRTLQWREIRGAGVVPRGRANHAAVLIGNKIYIHGGHRHL-AVFDDLFAYEIDTNRWEKIGCERSQGP 165          
BLAST of mRNA_M-pyrifera_M_contig110776.2267.1 vs. uniprot
Match: Q4Q1S9_LEIMA (Uncharacterized protein n=2 Tax=Leishmania major TaxID=5664 RepID=Q4Q1S9_LEIMA)

HSP 1 Score: 63.5 bits (153), Expect = 1.840e-9
Identity = 35/99 (35.35%), Postives = 47/99 (47.47%), Query Frame = 1
Query:   28 GHSAVSYGSRSILFGGRDGNGLASKAVYTYEHELAAWQLLRAAGRSPEPRALHAAVVIGNRMVVHGGLSSTGSPLADVHVLNIDSARWSTIECGPESAP 324
            GH  V Y     +FGG +  G  S  V+ YE     W+ +R  G  P  RA HAAV+IGN++ +HGG         D+    I++ RW  I C     P
Sbjct:   73 GHVGVCYHQNVYVFGGVNSKGQFSNHVFCYEKRTLQWREIRGVGVVPRGRANHAAVLIGNKIYIHGGHRHL-EVFDDLFAYEIETGRWEKIGCERSQGP 170          
BLAST of mRNA_M-pyrifera_M_contig110776.2267.1 vs. uniprot
Match: E9BTL2_LEIDB (Uncharacterized protein n=6 Tax=Leishmania donovani species complex TaxID=38574 RepID=E9BTL2_LEIDB)

HSP 1 Score: 62.8 bits (151), Expect = 3.440e-9
Identity = 35/99 (35.35%), Postives = 46/99 (46.46%), Query Frame = 1
Query:   28 GHSAVSYGSRSILFGGRDGNGLASKAVYTYEHELAAWQLLRAAGRSPEPRALHAAVVIGNRMVVHGGLSSTGSPLADVHVLNIDSARWSTIECGPESAP 324
            GH  V Y     +FGG +  G  S  V+ YE     W+ +R  G  P  RA HAAV+IGN++ +HGG         D     I++ RW  I C     P
Sbjct:   97 GHIGVCYHQNVYVFGGVNSKGQFSNHVFCYEKRTLQWREIRGVGVVPRGRANHAAVLIGNKIYIHGGHRHL-EVFDDFFAYEIETGRWEKIGCERSQGP 194          
BLAST of mRNA_M-pyrifera_M_contig110776.2267.1 vs. uniprot
Match: A0A1J4KTD7_9EUKA (DH domain-containing protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KTD7_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 4.710e-9
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   28 GHSAVSYGSRSILFGGRDGNG--LASKAVYTYEHELAAWQLLRAAGRSPEPRALHAAVVIGNRMVVHGGLSSTGSPLADVHVLNIDSARWST 297
            GHS +S  +  I+FGG D N   L+  ++YT+ +  A W+ L ++  SP  RA H+AVV+ N+M++HGG+SS+   L DV +L++ +  W T
Sbjct:  625 GHSLISTSNYLIMFGGIDHNKTILSDTSIYTFSN--AQWKSLISSEYSPCERAFHSAVVLQNKMIIHGGISSS-RVLDDVVMLDLSTMTWIT 713          
BLAST of mRNA_M-pyrifera_M_contig110776.2267.1 vs. uniprot
Match: A0A1R2AVZ7_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AVZ7_9CILI)

HSP 1 Score: 61.6 bits (148), Expect = 8.100e-9
Identity = 34/103 (33.01%), Postives = 59/103 (57.28%), Query Frame = 1
Query:   10 ESPEL-SGHSAVSYGSRSILFGGRDGNGL------ASKAVYTYEHELAAWQLLRAAGRSPEPRALHAAVVIGNRMVVHGGLSSTGSPLADVHVLNIDSARWST 297
            +SP + SG +++SY +  +++GG +           SK VY Y+     W   +  G+SPE R  H+AV++G  M+++GGL S G+ ++ + VL++ S  W T
Sbjct:  157 DSPRVRSGQTSISYKAFIVVYGGYETYDEILKVRNCSKLVYFYDTLANTWNSYKPDGKSPEGRRNHSAVLVGESMLIYGGLDSKGNLISGIEVLDLSSLLWDT 259          
BLAST of mRNA_M-pyrifera_M_contig110776.2267.1 vs. uniprot
Match: G7JJ54_MEDTR (Acyl-CoA-binding domain protein n=8 Tax=IRL clade TaxID=2233839 RepID=G7JJ54_MEDTR)

HSP 1 Score: 54.7 bits (130), Expect = 2.300e-6
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 1
Query:  136 WQLLRAAGRSPEPRALHAAVVIGNRMVVHGGLSSTGSPLADVHVLNIDSARWST----IECGPESAP 324
            W LL  +G  P PR  HAA VIGN+++V GG SSTG  L DV VLN ++  W+T    +   P S P
Sbjct:   84 WVLLSISGDKPAPRFNHAAAVIGNKIIVVGGESSTGL-LDDVQVLNFETFSWTTASSKLYLSPSSLP 149          
BLAST of mRNA_M-pyrifera_M_contig110776.2267.1 vs. uniprot
Match: A0A1B6FX38_9HEMI (Uncharacterized protein n=6 Tax=Proconiini TaxID=565685 RepID=A0A1B6FX38_9HEMI)

HSP 1 Score: 54.3 bits (129), Expect = 2.910e-6
Identity = 28/92 (30.43%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   28 GHSAVSYGSRSILFGGRDGNGLASKAVYTYEHELAAWQLLRAAGRSPEPRALHAAVVIGNRMVVHGGLSSTGSPLA-DVHVLNIDSARWSTI 300
            GH+AV YG+++ ++GGR+     +K +Y ++ E   W  ++  G  P  R  H+A +I N M + GG        + DV++L+++S  W+ +
Sbjct:   74 GHTAVPYGTKAYIWGGRNDEAACNK-LYCFDTERLEWTCVQTHGALPGARDGHSACIIDNNMYIFGGFEDDEDRFSQDVYMLDLESFCWTYV 164          
BLAST of mRNA_M-pyrifera_M_contig110776.2267.1 vs. uniprot
Match: A0A8B8CZR8_CRAVI (kelch domain-containing protein 1-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CZR8_CRAVI)

HSP 1 Score: 53.9 bits (128), Expect = 4.060e-6
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = 1
Query:    7 GESPEL-SGHSAVSYGSRSILFGGRDGNGLASKAVYTYEHELAAWQLLRAAGRSP-EPRALHAAVVIG-NRMVVHGGLSSTGSPLADVHVLNIDSARWSTIECGPESAP 324
            G+ P   + HSAV +GS+  +FGGR  + L    ++  +    AW  +   G  P E R+ H A  +  N+M V+GG ++   PL+D  +L+I S +WS +   P   P
Sbjct:  209 GQKPSARAAHSAVLFGSKVYIFGGRHMD-LRLNDLHCLDLHTMAWSGVLCVGTDPPEGRSWHTASAVSTNQMFVYGGFNTNCVPLSDAWLLDITSLQWSVLTQFPNDRP 316          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110776.2267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A640KU98_LEITA1.530e-1037.37Uncharacterized protein n=1 Tax=Leishmania tarento... [more]
A0A2V0NVA9_9CHLO2.770e-1037.50ACB domain-containing protein n=1 Tax=Raphidocelis... [more]
E9ASR7_LEIMU5.310e-1036.36Uncharacterized protein n=1 Tax=Leishmania mexican... [more]
Q4Q1S9_LEIMA1.840e-935.35Uncharacterized protein n=2 Tax=Leishmania major T... [more]
E9BTL2_LEIDB3.440e-935.35Uncharacterized protein n=6 Tax=Leishmania donovan... [more]
A0A1J4KTD7_9EUKA4.710e-940.22DH domain-containing protein n=1 Tax=Tritrichomona... [more]
A0A1R2AVZ7_9CILI8.100e-933.01Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
G7JJ54_MEDTR2.300e-647.76Acyl-CoA-binding domain protein n=8 Tax=IRL clade ... [more]
A0A1B6FX38_9HEMI2.910e-630.43Uncharacterized protein n=6 Tax=Proconiini TaxID=5... [more]
A0A8B8CZR8_CRAVI4.060e-633.03kelch domain-containing protein 1-like n=1 Tax=Cra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110776contigM-pyrifera_M_contig110776:15..338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.5
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog161934.XP_010683938.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acyl-CoA-binding domain-containing protein
EggNOG OGs37QGY@33090,3GBRG@35493,KOG0379@1,KOG0379@2759
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.8765252-CDS-M-pyrifera_M_contig110776:14..3381622815619.8765252-CDS-M-pyrifera_M_contig110776:14..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110776 15..338 -
1692277490.7055876-CDS-M-pyrifera_M_contig110776:14..3381692277490.7055876-CDS-M-pyrifera_M_contig110776:14..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110776 15..338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110776.2267.1prot_M-pyrifera_M_contig110776.2267.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110776 15..338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110776.2267.1

>prot_M-pyrifera_M_contig110776.2267.1 ID=prot_M-pyrifera_M_contig110776.2267.1|Name=mRNA_M-pyrifera_M_contig110776.2267.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
VVGESPELSGHSAVSYGSRSILFGGRDGNGLASKAVYTYEHELAAWQLLR
AAGRSPEPRALHAAVVIGNRMVVHGGLSSTGSPLADVHVLNIDSARWSTI
ECGPESAP
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mRNA from alignment at M-pyrifera_M_contig110776:15..338-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110776.2267.1 ID=mRNA_M-pyrifera_M_contig110776.2267.1|Name=mRNA_M-pyrifera_M_contig110776.2267.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig110776:15..338- (Macrocystis pyrifera P11B4 male)
GTGGTCGGCGAGTCGCCAGAGCTCTCCGGGCACTCGGCTGTTTCCTACGG CTCCCGCTCGATCCTGTTCGGCGGGCGGGACGGCAACGGCCTGGCGAGCA AGGCAGTGTACACGTACGAGCACGAGCTGGCAGCGTGGCAGCTGCTGCGC GCGGCCGGCCGCTCGCCAGAGCCACGCGCGTTGCACGCTGCCGTTGTGAT CGGAAATCGCATGGTGGTGCACGGTGGTCTGTCCTCCACCGGCTCGCCCC TGGCCGACGTGCACGTGCTGAACATCGACTCTGCGCGGTGGAGCACGATC GAGTGTGGGCCGGAGTCGGCCCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110776:15..338-

>mRNA_M-pyrifera_M_contig110776.2267.1 ID=mRNA_M-pyrifera_M_contig110776.2267.1|Name=mRNA_M-pyrifera_M_contig110776.2267.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig110776:15..338- (Macrocystis pyrifera P11B4 male)
GTGGTCGGCGAGTCGCCAGAGCTCTCCGGGCACTCGGCTGTTTCCTACGG
CTCCCGCTCGATCCTGTTCGGCGGGCGGGACGGCAACGGCCTGGCGAGCA
AGGCAGTGTACACGTACGAGCACGAGCTGGCAGCGTGGCAGCTGCTGCGC
GCGGCCGGCCGCTCGCCAGAGCCACGCGCGTTGCACGCTGCCGTTGTGAT
CGGAAATCGCATGGTGGTGCACGGTGGTCTGTCCTCCACCGGCTCGCCCC
TGGCCGACGTGCACGTGCTGAACATCGACTCTGCGCGGTGGAGCACGATC
GAGTGTGGGCCGGAGTCGGCCCCGGTGGTCGGCGAGTCGCCAGAGCTCTC
CGGGCACTCGGCTGTTTCCTACGGCTCCCGCTCGATCCTGTTCGGCGGGC
GGGACGGCAACGGCCTGGCGAGCAAGGCAGTGTACACGTACGAGCACGAG
CTGGCAGCGTGGCAGCTGCTGCGCGCGGCCGGCCGCTCGCCAGAGCCACG
CGCGTTGCACGCTGCCGTTGTGATCGGAAATCGCATGGTGGTGCACGGTG
GTCTGTCCTCCACCGGCTCGCCCCTGGCCGACGTGCACGTGCTGAACATC
GACTCTGCGCGGTGGAGCACGATCGAGTGTGGGCCGGAGTCGGCCCCG
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