mRNA_M-pyrifera_M_contig110771.2265.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110771.2265.1
Unique NamemRNA_M-pyrifera_M_contig110771.2265.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110771.2265.1 vs. uniprot
Match: A0A151ZF00_9MYCE (Calcium-binding EF-hand domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZF00_9MYCE)

HSP 1 Score: 64.7 bits (156), Expect = 2.490e-10
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   70 KGVKLKVMSLTLNGLLEYDETDHFEQTFEVSLFAELFQEMLQREFGDMVLEAMVRF 237
            +G K K M L+L+GLL+YDETD FE TFE SLF+ELF  ML R+ G ++L +++ +
Sbjct:  809 EGNKFKAMMLSLDGLLDYDETDKFEGTFEASLFSELFNLMLARDMGTLILNSIINY 864          
BLAST of mRNA_M-pyrifera_M_contig110771.2265.1 vs. uniprot
Match: D3AZV5_POLPP (RNA-binding region RNP-1 domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AZV5_POLPP)

HSP 1 Score: 63.2 bits (152), Expect = 8.700e-10
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   70 KGVKLKVMSLTLNGLLEYDETDHFEQTFEVSLFAELFQEMLQREFGDMVLEAMVRFS 240
            + +K + M L+L+GLLEYDE+D FE TFE SLF ELF  ML R+FG ++L++++ F+
Sbjct:  790 ENMKYRSMMLSLDGLLEYDESDKFEGTFEASLFGELFYLMLCRDFGSLILQSILYFN 846          
BLAST of mRNA_M-pyrifera_M_contig110771.2265.1 vs. uniprot
Match: A0A8J4PMV8_9MYCE (EF-hand domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PMV8_9MYCE)

HSP 1 Score: 62.8 bits (151), Expect = 1.190e-9
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   70 KGVKLKVMSLTLNGLLEYDETDHFEQTFEVSLFAELFQEMLQREFGDMVLEAMVRF 237
            +G K K M L+L+GLL+YDETD  E TFE SLFAELF  ML R+ G  +L ++V F
Sbjct:  819 EGNKYKAMMLSLDGLLDYDETDRHEGTFEASLFAELFFLMLSRDMGKTILNSIVNF 874          
BLAST of mRNA_M-pyrifera_M_contig110771.2265.1 vs. uniprot
Match: A0A8J4CTB4_9CHLO (EF-hand domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CTB4_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 2.250e-9
Identity = 29/53 (54.72%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   73 GVKLKVMSLTLNGLLEYDETDHFEQTFEVSLFAELFQEMLQREFGDMVLEAMV 231
            G ++K  S++L+GLL+YDETD  E TFE+S+FAE FQ++L RE+G +V  A+V
Sbjct: 1289 GERVKTFSISLHGLLDYDETDRDEPTFELSVFAECFQDVLAREYGGVVYAALV 1341          
BLAST of mRNA_M-pyrifera_M_contig110771.2265.1 vs. uniprot
Match: A0A8J4F4J2_9CHLO (EF-hand domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F4J2_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 2.250e-9
Identity = 29/53 (54.72%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   73 GVKLKVMSLTLNGLLEYDETDHFEQTFEVSLFAELFQEMLQREFGDMVLEAMV 231
            G ++K  S++L+GLL+YDETD  E TFE+S+FAE FQ++L RE+G +V  A+V
Sbjct: 1293 GERVKTFSISLHGLLDYDETDRDEPTFELSVFAECFQDILAREYGGVVYAALV 1345          
BLAST of mRNA_M-pyrifera_M_contig110771.2265.1 vs. uniprot
Match: A0A388KJB2_CHABU (LAIKA domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KJB2_CHABU)

HSP 1 Score: 60.8 bits (146), Expect = 5.200e-9
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1
Query:   79 KLKVMSLTLNGLLEYDETDHFEQTFEVSLFAELFQEMLQREFGDMVLEAMV 231
            K++ MS++L+GLL+Y E D  E TFE+SLFAELFQEMLQR+FG  V  ++V
Sbjct:  110 KIRSMSISLDGLLDYVEDDREECTFELSLFAELFQEMLQRKFGMAVYNSLV 160          
BLAST of mRNA_M-pyrifera_M_contig110771.2265.1 vs. uniprot
Match: A0A250XQE9_9CHLO (EF-hand domain-containing protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XQE9_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 7.430e-9
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   70 KGVKLKVMSLTLNGLLEYDETDHFEQTFEVSLFAELFQEMLQREFGDMVLEAMVR 234
            K  K++ +S++L+GLL+YD  D  E T E+SLFAELFQ+ML REFG  + +A+VR
Sbjct:  138 KDDKVRTVSISLHGLLDYDRDDSEEATVELSLFAELFQDMLAREFGFNIYQALVR 192          
BLAST of mRNA_M-pyrifera_M_contig110771.2265.1 vs. uniprot
Match: F4PHY0_CAVFA (Calcium-binding EF-hand domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PHY0_CAVFA)

HSP 1 Score: 60.1 bits (144), Expect = 1.060e-8
Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   76 VKLKVMSLTLNGLLEYDETDHFEQTFEVSLFAELFQEMLQREFGDMVLEAMVRFS 240
            +K + M L+L+GLL+Y+E+D FE TFE SLF ELF  ML  E G++V++A++ F+
Sbjct:  821 IKYRAMMLSLDGLLDYEESDKFEGTFEASLFGELFYLMLATEMGNIVMQALLDFT 875          
BLAST of mRNA_M-pyrifera_M_contig110771.2265.1 vs. uniprot
Match: D8UJA8_VOLCA (EF-hand domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UJA8_VOLCA)

HSP 1 Score: 60.1 bits (144), Expect = 1.070e-8
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   79 KLKVMSLTLNGLLEYDETDHFEQTFEVSLFAELFQEMLQREFGDMVLEAMV 231
            ++K  S++L+GLL+YDETD  E TFE+S+F E FQ+ML RE+G  +  A+V
Sbjct: 1208 RIKTFSISLHGLLDYDETDRDEPTFELSVFTECFQDMLSREYGGTIYAALV 1258          
BLAST of mRNA_M-pyrifera_M_contig110771.2265.1 vs. uniprot
Match: F0Z7N3_DICPU (EF-hand domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z7N3_DICPU)

HSP 1 Score: 59.7 bits (143), Expect = 1.440e-8
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   73 GVKLKVMSLTLNGLLEYDETDHFEQTFEVSLFAELFQEMLQREFGDMVLEAMVRF 237
            G K K M L+L+GLL+YDETD  E TFE SLF+ELF  ML R+ G  +L  ++ +
Sbjct:  528 GNKFKAMMLSLDGLLDYDETDVHESTFEASLFSELFYLMLARDMGTTILNTIINY 582          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110771.2265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151ZF00_9MYCE2.490e-1053.57Calcium-binding EF-hand domain-containing protein ... [more]
D3AZV5_POLPP8.700e-1052.63RNA-binding region RNP-1 domain-containing protein... [more]
A0A8J4PMV8_9MYCE1.190e-957.14EF-hand domain-containing protein n=1 Tax=Polyspho... [more]
A0A8J4CTB4_9CHLO2.250e-954.72EF-hand domain-containing protein n=2 Tax=Volvox r... [more]
A0A8J4F4J2_9CHLO2.250e-954.72EF-hand domain-containing protein n=1 Tax=Volvox a... [more]
A0A388KJB2_CHABU5.200e-960.78LAIKA domain-containing protein n=1 Tax=Chara brau... [more]
A0A250XQE9_9CHLO7.430e-954.55EF-hand domain-containing protein (Fragment) n=1 T... [more]
F4PHY0_CAVFA1.060e-850.91Calcium-binding EF-hand domain-containing protein ... [more]
D8UJA8_VOLCA1.070e-852.94EF-hand domain-containing protein (Fragment) n=1 T... [more]
F0Z7N3_DICPU1.440e-852.73EF-hand domain-containing protein n=1 Tax=Dictyost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110771contigM-pyrifera_M_contig110771:105..344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.7505252-CDS-M-pyrifera_M_contig110771:104..3441622815619.7505252-CDS-M-pyrifera_M_contig110771:104..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110771 105..344 +
1692277490.648926-CDS-M-pyrifera_M_contig110771:104..3441692277490.648926-CDS-M-pyrifera_M_contig110771:104..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110771 105..344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110771.2265.1prot_M-pyrifera_M_contig110771.2265.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110771 105..344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110771.2265.1

>prot_M-pyrifera_M_contig110771.2265.1 ID=prot_M-pyrifera_M_contig110771.2265.1|Name=mRNA_M-pyrifera_M_contig110771.2265.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
EAVPLAQTVTSETDTVTLIAAVPKGVKLKVMSLTLNGLLEYDETDHFEQT
FEVSLFAELFQEMLQREFGDMVLEAMVRFS
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mRNA from alignment at M-pyrifera_M_contig110771:105..344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110771.2265.1 ID=mRNA_M-pyrifera_M_contig110771.2265.1|Name=mRNA_M-pyrifera_M_contig110771.2265.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig110771:105..344+ (Macrocystis pyrifera P11B4 male)
GAAGCAGTGCCACTCGCTCAGACTGTTACGAGCGAGACAGATACGGTGAC CTTGATTGCTGCCGTCCCGAAGGGCGTGAAGCTCAAGGTGATGTCGCTGA CCCTCAATGGCCTGCTGGAGTACGACGAGACAGACCACTTCGAGCAGACC TTCGAGGTCTCGCTCTTCGCAGAGCTCTTTCAGGAGATGTTGCAGAGGGA GTTCGGCGACATGGTCCTCGAGGCAATGGTCCGCTTCAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110771:105..344+

>mRNA_M-pyrifera_M_contig110771.2265.1 ID=mRNA_M-pyrifera_M_contig110771.2265.1|Name=mRNA_M-pyrifera_M_contig110771.2265.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig110771:105..344+ (Macrocystis pyrifera P11B4 male)
GAAGCAGTGCCACTCGCTCAGACTGTTACGAGCGAGACAGATACGGTGAC
CTTGATTGCTGCCGTCCCGAAGGGCGTGAAGCTCAAGGTGATGTCGCTGA
CCCTCAATGGCCTGCTGGAGTACGACGAGACAGACCACTTCGAGCAGACC
TTCGAGGTCTCGCTCTTCGCAGAGCTCTTTCAGGAGATGTTGCAGAGGGA
GTTCGGCGACATGGTCCTCGAGGCAATGGTCCGCTTCAGCGAAGCAGTGC
CACTCGCTCAGACTGTTACGAGCGAGACAGATACGGTGACCTTGATTGCT
GCCGTCCCGAAGGGCGTGAAGCTCAAGGTGATGTCGCTGACCCTCAATGG
CCTGCTGGAGTACGACGAGACAGACCACTTCGAGCAGACCTTCGAGGTCT
CGCTCTTCGCAGAGCTCTTTCAGGAGATGTTGCAGAGGGAGTTCGGCGAC
ATGGTCCTCGAGGCAATGGTCCGCTTCAGC
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