mRNA_M-pyrifera_M_contig98230.22634.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98230.22634.1
Unique NamemRNA_M-pyrifera_M_contig98230.22634.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98230.22634.1 vs. uniprot
Match: A0A7S3H9I5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9I5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.760e-11
Identity = 41/110 (37.27%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:   13 PLLVLSVFSRDVFGRCRTHGYTQVPIPTSPGSHQIRARTWKPAPRLREAMQDFFLGGAGRVVTRRADLGLVSSTEFSAESSLPFVTQGGNKFGTRTVTSGSIALRFDVAV 342
            P +V  VFS D  GR +  GY    +   PGSH +  RTW+P  R+R+ MQDFFLG A  +     D   V S   +A +         N+FG  T +SGS+ +R    V
Sbjct:  400 PTMVFQVFSTDWLGRHKLEGYGFHHLSDQPGSHDLEIRTWRPVGRIRDQMQDFFLGNAAYL----KDEHFVDSVNKTASAL--------NRFGVLTHSSGSVRIRVHTVV 497
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BLAST of mRNA_M-pyrifera_M_contig98230.22634.1 vs. uniprot
Match: A0A2P8YYQ1_BLAGE (Meckel syndrome type 1 protein n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YYQ1_BLAGE)

HSP 1 Score: 66.6 bits (161), Expect = 2.190e-10
Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:    1 VLARPLLVLSVFSRDVFGRCRTHGYTQVPIPTSPGSHQIRARTWKP--APRLREAMQDFFLGGAGRVVTRRADLGLVSSTEFSAESSLPFVTQGGNKFGTRTVTSGSIALRFDV 336
            +L+ P + LSV S D + RCRT GY  + +P+SPG H+I   TW+P  +  L E ++ FF+GG+  +    + +G+ S  E +  S          K G RT+TSG +AL+F++
Sbjct:  366 LLSWPQMFLSVLSIDSWNRCRTEGYGYISLPSSPGIHEITVSTWRPLSSSPLGE-LRRFFIGGSPELEDP-SFVGVPSDFEGNRLS----------KHGLRTITSGDVALKFNI 467
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BLAST of mRNA_M-pyrifera_M_contig98230.22634.1 vs. uniprot
Match: A0A0V1KFA7_TRIPS (26S proteasome non-ATPase regulatory subunit 14 n=2 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1KFA7_TRIPS)

HSP 1 Score: 55.1 bits (131), Expect = 2.540e-6
Identity = 35/106 (33.02%), Postives = 53/106 (50.00%), Query Frame = 1 
Query:   13 PLLVLSVFSRDVFGRCRTHGYTQVPIPTSPGSHQIRARTWKPAPRLREAMQDFFLGGAGRVVTRRADLGLVSSTEFSAESSLPFVTQGGNKFGTRTVTSGSIALRF 330
            P L L+V S D + R R  GY  + +P  PG  +    TW+PA  +   M+ +F+GG+  +      L    +  F  E  L       +K+G RTV+SGS+ L+F
Sbjct:  648 PQLFLTVMSLDTYNRYRLEGYGYMSLPADPGISEHIVNTWRPAEDVISNMRRYFIGGSFEL---EDVLCCRYAKSFEGERIL-------SKYGFRTVSSGSVKLKF 743
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BLAST of mRNA_M-pyrifera_M_contig98230.22634.1 vs. uniprot
Match: A0A0V1MUW7_9BILA (26S proteasome non-ATPase regulatory subunit 14 n=34 Tax=Trichinella TaxID=6333 RepID=A0A0V1MUW7_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 6.460e-6
Identity = 34/106 (32.08%), Postives = 53/106 (50.00%), Query Frame = 1 
Query:   13 PLLVLSVFSRDVFGRCRTHGYTQVPIPTSPGSHQIRARTWKPAPRLREAMQDFFLGGAGRVVTRRADLGLVSSTEFSAESSLPFVTQGGNKFGTRTVTSGSIALRF 330
            P L L+V S D + R R  GY  + +P  PG  +    TW+PA  +   ++ +F+GG+  +      L    +  F  E  L       +K+G RTV+SGS+ L+F
Sbjct:  698 PQLFLTVMSLDTYNRYRLEGYGYMSLPADPGISEHIVNTWRPAEDVVSNLRRYFIGGSFEL---EDVLCCRYAKSFEGERIL-------SKYGFRTVSSGSVKLKF 793
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BLAST of mRNA_M-pyrifera_M_contig98230.22634.1 vs. uniprot
Match: A0A0V1EYW7_TRIPS (Meckel syndrome type 1-like protein (Fragment) n=4 Tax=Trichinella TaxID=6333 RepID=A0A0V1EYW7_TRIPS)

HSP 1 Score: 52.0 bits (123), Expect = 2.890e-5
Identity = 37/115 (32.17%), Postives = 56/115 (48.70%), Query Frame = 1 
Query:   13 PLLVLSVFSRDVFGRCRTHGYTQVPIPTSPGSHQIRARTWKPAPRLREAMQDFFLGGAGRV----VTRRAD-----LGLVSSTEFSAESSLPFVTQGGNKFGTRTVTSGSIALRF 330
            P L L+V S D + R R  GY  + +P  PG  +    TW+PA  +   M+ +F+GG+  +      R A      L ++    F  E  L       +K+G RTV+SGS+ L+F
Sbjct:  347 PQLFLTVMSLDTYNRYRLEGYGYMSLPADPGISEHIVNTWRPAEDVISNMRRYFIGGSFELEDVLCCRYAKSFEVLLFVLCVYTFFGERIL-------SKYGFRTVSSGSVKLKF 454
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98230.22634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S3H9I5_9STRA4.760e-1137.27Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2P8YYQ1_BLAGE2.190e-1036.84Meckel syndrome type 1 protein n=1 Tax=Blattella g... [more]
A0A0V1KFA7_TRIPS2.540e-633.0226S proteasome non-ATPase regulatory subunit 14 n=... [more]
A0A0V1MUW7_9BILA6.460e-632.0826S proteasome non-ATPase regulatory subunit 14 n=... [more]
A0A0V1EYW7_TRIPS2.890e-532.17Meckel syndrome type 1-like protein (Fragment) n=4... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98230contigM-pyrifera_M_contig98230:37..396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2880.D8LHG4
Preferred nameMKS1
KEGG koko:K03030,ko:K19332
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categorysignal peptide
GOsGO:0000226,GO:0001501,GO:0001578,GO:0001763,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0002009,GO:0003007,GO:0003156,GO:0003205,GO:0003206,GO:0003264,GO:0003266,GO:0003271,GO:0003279,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007568,GO:0007610,GO:0008150,GO:0008340,GO:0008589,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010259,GO:0010646,GO:0010669,GO:0014020,GO:0015630,GO:0016020,GO:0016043,GO:0016331,GO:0021915,GO:0022008,GO:0022406,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030111,GO:0030154,GO:0030182,GO:0030326,GO:0030537,GO:0031175,GO:0032501,GO:0032502,GO:0032991,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035148,GO:0035177,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0036064,GO:0042127,GO:0042490,GO:0042592,GO:0042733,GO:0042995,GO:0043009,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043583,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0045995,GO:0048468,GO:0048513,GO:0048568,GO:0048583,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048706,GO:0048729,GO:0048731,GO:0048736,GO:0048754,GO:0048839,GO:0048856,GO:0048869,GO:0048871,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051239,GO:0051640,GO:0051641,GO:0051716,GO:0051960,GO:0060113,GO:0060119,GO:0060122,GO:0060173,GO:0060249,GO:0060271,GO:0060322,GO:0060411,GO:0060429,GO:0060562,GO:0060606,GO:0060756,GO:0060828,GO:0061008,GO:0061009,GO:0061138,GO:0061311,GO:0061822,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0090175,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901620,GO:1905330,GO:1905349,GO:1905515,GO:1990403,GO:2000026,GO:2000027,GO:2000050,GO:2000095,GO:2000136,GO:2000826
EggNOG free text desc.smoothened signaling pathway involved in regulation of secondary heart field cardioblast proliferation
EggNOG OGsKOG4446@1,KOG4446@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01002,ko03036,ko03051,ko04121
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.380127-CDS-M-pyrifera_M_contig98230:36..3961622816900.380127-CDS-M-pyrifera_M_contig98230:36..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98230 37..396 -
1692278244.5508556-CDS-M-pyrifera_M_contig98230:36..3961692278244.5508556-CDS-M-pyrifera_M_contig98230:36..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98230 37..396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98230.22634.1prot_M-pyrifera_M_contig98230.22634.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98230 37..396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98230.22634.1

>prot_M-pyrifera_M_contig98230.22634.1 ID=prot_M-pyrifera_M_contig98230.22634.1|Name=mRNA_M-pyrifera_M_contig98230.22634.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
VLARPLLVLSVFSRDVFGRCRTHGYTQVPIPTSPGSHQIRARTWKPAPRL
REAMQDFFLGGAGRVVTRRADLGLVSSTEFSAESSLPFVTQGGNKFGTRT
VTSGSIALRFDVAVQRAMSP
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mRNA from alignment at M-pyrifera_M_contig98230:37..396-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98230.22634.1 ID=mRNA_M-pyrifera_M_contig98230.22634.1|Name=mRNA_M-pyrifera_M_contig98230.22634.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig98230:37..396- (Macrocystis pyrifera P11B4 male)
GTGTTGGCCCGTCCCTTGCTGGTCTTGTCTGTGTTTTCTCGGGACGTGTT
CGGTCGTTGTCGCACTCACGGCTATACCCAAGTGCCCATTCCCACAAGCC
CAGGTAGCCACCAAATCCGTGCTCGAACGTGGAAGCCTGCTCCTCGATTG
CGTGAGGCGATGCAGGATTTCTTTTTGGGAGGTGCAGGGAGGGTGGTGAC
TCGGAGGGCAGATTTGGGTCTCGTCTCTTCCACCGAATTTTCCGCAGAAT
CTTCGCTGCCCTTTGTTACCCAGGGCGGAAACAAATTCGGCACACGCACA
GTCACTTCTGGAAGCATCGCTCTTCGCTTCGACGTAGCTGTCCAACGAGC
CATGTCTCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98230:37..396-

>mRNA_M-pyrifera_M_contig98230.22634.1 ID=mRNA_M-pyrifera_M_contig98230.22634.1|Name=mRNA_M-pyrifera_M_contig98230.22634.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig98230:37..396- (Macrocystis pyrifera P11B4 male)
GTGTTGGCCCGTCCCTTGCTGGTCTTGTCTGTGTTTTCTCGGGACGTGTT
CGGTCGTTGTCGCACTCACGGCTATACCCAAGTGCCCATTCCCACAAGCC
CAGGTAGCCACCAAATCCGTGCTCGAACGTGGAAGCCTGCTCCTCGATTG
CGTGAGGCGATGCAGGATTTCTTTTTGGGAGGTGCAGGGAGGGTGGTGAC
TCGGAGGGCAGATTTGGGTCTCGTCTCTTCCACCGAATTTTCCGCAGAAT
CTTCGCTGCCCTTTGTTACCCAGGGCGGAAACAAATTCGGCACACGCACA
GTCACTTCTGGAAGCATCGCTCTTCGCTTCGACGTAGCTGTCCAACGAGC
CATGTCTCCTGTGTTGGCCCGTCCCTTGCTGGTCTTGTCTGTGTTTTCTC
GGGACGTGTTCGGTCGTTGTCGCACTCACGGCTATACCCAAGTGCCCATT
CCCACAAGCCCAGGTAGCCACCAAATCCGTGCTCGAACGTGGAAGCCTGC
TCCTCGATTGCGTGAGGCGATGCAGGATTTCTTTTTGGGAGGTGCAGGGA
GGGTGGTGACTCGGAGGGCAGATTTGGGTCTCGTCTCTTCCACCGAATTT
TCCGCAGAATCTTCGCTGCCCTTTGTTACCCAGGGCGGAAACAAATTCGG
CACACGCACAGTCACTTCTGGAAGCATCGCTCTTCGCTTCGACGTAGCTG
TCCAACGAGCCATGTCTCCT
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