mRNA_M-pyrifera_M_contig98228.22630.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98228.22630.1
Unique NamemRNA_M-pyrifera_M_contig98228.22630.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98228.22630.1 vs. uniprot
Match: A0A5A8DH30_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DH30_CAFRO)

HSP 1 Score: 102 bits (253), Expect = 8.300e-26
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:   22 REREALFRAPSAHDRLPEYNPLHDGNLSHFFASRSVRETLAGLGMVTRDGRVVDLDRFKGKVHIIEQEFANVEREEELRR 261
            R RE  F A    +++PEYNPL+D NL HFF ++SVR TL  LGMV R GRV+D D+ KGK+HIIEQEFANVEREEE RR
Sbjct:    4 RAREEGFTAALGREKMPEYNPLYDANLRHFFGTKSVRSTLFRLGMVDRAGRVIDADQHKGKLHIIEQEFANVEREEEERR 83
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BLAST of mRNA_M-pyrifera_M_contig98228.22630.1 vs. uniprot
Match: A0A5A8EK86_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EK86_CAFRO)

HSP 1 Score: 102 bits (253), Expect = 1.020e-23
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:   22 REREALFRAPSAHDRLPEYNPLHDGNLSHFFASRSVRETLAGLGMVTRDGRVVDLDRFKGKVHIIEQEFANVEREEELRR 261
            R RE  F A    +++PEYNPL+D NL HFF ++SVR TL  LGMV R GRV+D D+ KGK+HIIEQEFANVEREEE RR
Sbjct:    4 RAREEGFTAALGREKMPEYNPLYDANLRHFFGTKSVRSTLFRLGMVDRAGRVIDADQHKGKLHIIEQEFANVEREEEERR 83
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BLAST of mRNA_M-pyrifera_M_contig98228.22630.1 vs. uniprot
Match: A0A7S2R5M2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5M2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.290e-22
Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 1 
Query:    1 ERREVRAREREALFRAPSAHDR-LPEYNPLHDGNLSHFFASRSVRETLAGLGMVTRDGRVVDLDRFKGKVHIIEQEFANVEREEELRRXXXXXXXRRVRAKRHAAIERARKLEKMARIKEDRRLRREIL 384
            +RR VR   RE+ +   S     LP+YN L+D N+ HFF +++++  L   G + RDGRV+DL++ K K+HIIEQEF    R E  R+        RV+ KRH A+ERAR+ EK+ ++KEDR +RREI+
Sbjct:    5 QRRRVRLENRESGWDLTSCRTASLPDYNALYDPNMRHFFENQTIQRHLHRTGQIDRDGRVIDLEKNKAKLHIIEQEFKQANRLEFWRQKEEEEMRHRVQQKRHEALERARQQEKLIKMKEDRAIRREIV 133
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BLAST of mRNA_M-pyrifera_M_contig98228.22630.1 vs. uniprot
Match: A0A485KAZ0_9STRA (Aste57867_1687 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KAZ0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.200e-21
Identity = 51/119 (42.86%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:   28 REALFRAPSAHDRLPEYNPLHDGNLSHFFASRSVRETLAGLGMVTRDGRVVDLDRFKGKVHIIEQEFANVEREEELRRXXXXXXXRRVRAKRHAAIERARKLEKMARIKEDRRLRREIL 384
            RE  F + + +  LPEYN L DGNL HFF +R +++ L  +G++ + GRV+D ++ KGK+ I++QEF + E+ E L++       RRV+ +RH A+  ARK EK+ +IK+DR+L R+I+
Sbjct:   19 REQTFDSNTHNQTLPEYNALADGNLRHFFENRKLQQHLYDVGLIDKAGRVIDPEKHKGKLAILQQEFKHAEKAELLKQREEEEIRRRVQLRRHTALNEARKDEKIKKIKDDRKLTRQIV 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig98228.22630.1 vs. uniprot
Match: A0A7S1CJ44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJ44_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.230e-21
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:   28 REALFRAPSAHDRLPEYNPLHDGNLSHFFASRSVRETLAGLGMVTRDGRVVDLDRFKGKVHIIEQEFANVEREEELRRXXXXXXXRRVRAKRHAAIERAR 327
            RE+ F   +A+DRLP YN L D NL H+F +R V++ L G GM+ R+GR++DL++ K K+ IIEQEF + E EEE R  XXXXXX RV+ KRH A+ERAR
Sbjct:   20 RESAFDTNTANDRLPGYNALFDSNLRHYFENRRVQKHLYGNGMIDREGRIIDLEKNKAKLSIIEQEFKSAEAEEEQRLRXXXXXXXRVQKKRHEALERAR 119
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BLAST of mRNA_M-pyrifera_M_contig98228.22630.1 vs. uniprot
Match: W4G2C2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2C2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.370e-21
Identity = 53/118 (44.92%), Postives = 78/118 (66.10%), Query Frame = 1 
Query:   28 REALFRAPSAHDRLPEYNPLHDGNLSHFFASRSVRETLAGLGMVTRDGRVVDLDRFKGKVHIIEQEFANVEREEELRRXXXXXXXRRVRAKRHAAIERARKLEKMARIKEDRRLRREI 381
            RE  F   + + +LPEYN L D NL HFF +R ++  L  +GM+ + GRV+D D+ KGK+ I++QEF + E+ E LR+       RRV+ +RHAA+  ARK EK+ +IK+DR L ++I
Sbjct:    4 REKSFDTNTHNQKLPEYNALADHNLRHFFENRKLQHHLYDVGMIDKAGRVIDPDKHKGKLAILQQEFKHAEKAELLRQREEDEIRRRVQLRRHAALNEARKEEKIKKIKDDRMLTKQI 121
[Close]
BLAST of mRNA_M-pyrifera_M_contig98228.22630.1 vs. uniprot
Match: A0A5A8D9J4_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D9J4_CAFRO)

HSP 1 Score: 96.7 bits (239), Expect = 6.140e-21
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   67 LPEYNPLHDGNLSHFFASRSVRETLAGLGMVTRDGRVVDLDRFKGKVHIIEQEFANVEREEELRR 261
            +PEYNPL+D NL HFF ++SVR TL  LGMV R GRV+D D+ KGK+HIIEQEFANVEREEE RR
Sbjct:    1 MPEYNPLYDANLRHFFGTKSVRSTLFRLGMVDRAGRVIDADQHKGKLHIIEQEFANVEREEEERR 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig98228.22630.1 vs. uniprot
Match: K3X3F0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3F0_GLOUD)

HSP 1 Score: 90.9 bits (224), Expect = 9.630e-21
Identity = 58/127 (45.67%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:    7 REVRAREREALFRAPSAH-DRLPEYNPLHDGNLSHFFASRSVRETLAGLGMVTRDGRVVDLDRFKGKVHIIEQEFANVEREEELRRXXXXXXXRRVRAKRHAAIERARKLEKMARIKEDRRLRREIL 384
            RE + R+RE  F     H +RLPEYN L D NL H F +RS++  L+ +G++ + GR+VDL+R K K+ IIEQEF   E+ E+ R   XX   RRV+ KRH A+  AR+ EK+ ++KE++++ REI+
Sbjct:   12 REEQLRQRENGFNLSGVHQERLPEYNALVDRNLRHHFENRSLQHHLSDVGLIDQRGRIVDLERQKAKLSIIEQEFKIAEQSEKRRSKEXXEIRRRVQMKRHDALHEARQKEKLLQLKEEKKIVREIV 138
[Close]
BLAST of mRNA_M-pyrifera_M_contig98228.22630.1 vs. uniprot
Match: A0A024TXZ8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXZ8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.270e-20
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:   28 REALFRAPSAHDRLPEYNPLHDGNLSHFFASRSVRETLAGLGMVTRDGRVVDLDRFKGKVHIIEQEFANVEREEELRRXXXXXXXRRVRAKRHAAIERARKLEKMARIKEDRRL 369
            RE  F + + + +LPEYN L D NL HFF +R ++  L  +GM+ + GRV+D ++ KGK+ I++QEF + E+ E LR+       RRV+ +RHAA+  ARK EK+ +IKEDR L
Sbjct:    4 REQGFDSNTHNQKLPEYNALADHNLRHFFENRKLQHHLYDVGMIDKAGRVIDPEKHKGKLAILQQEFKHAEKAELLRQREEEEIRRRVQLRRHAALNEARKEEKIKKIKEDRML 117
[Close]
BLAST of mRNA_M-pyrifera_M_contig98228.22630.1 vs. uniprot
Match: A0A8K1FS37_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FS37_PYTOL)

HSP 1 Score: 89.4 bits (220), Expect = 3.950e-20
Identity = 54/122 (44.26%), Postives = 80/122 (65.57%), Query Frame = 1 
Query:   22 REREALFRAPSAH-DRLPEYNPLHDGNLSHFFASRSVRETLAGLGMVTRDGRVVDLDRFKGKVHIIEQEFANVEREEELRRXXXXXXXRRVRAKRHAAIERARKLEKMARIKEDRRLRREIL 384
            R+RE+ F     H ++LP YN L D NL H F +R+V++ L   G+V + GR+VDL++ K K+ IIEQEF   E+ E LR        RRV+ KRH AI+ AR+ EK+ ++KE++++ REI+
Sbjct:   16 RQRESGFNLSGVHQEKLPSYNALLDRNLRHHFENRNVQKHLNTYGLVDQRGRIVDLEKQKSKLSIIEQEFKLAEQAERLREKEEEEIRRRVQIKRHGAIQEARQKEKLMQLKEEKKIAREIV 137
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98228.22630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DH30_CAFRO8.300e-2665.00Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8EK86_CAFRO1.020e-2365.00Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S2R5M2_9STRA3.290e-2244.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485KAZ0_9STRA2.200e-2142.86Aste57867_1687 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S1CJ44_9STRA2.230e-2156.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
W4G2C2_9STRA2.370e-2144.92Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A5A8D9J4_CAFRO6.140e-2172.31Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
K3X3F0_GLOUD9.630e-2145.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024TXZ8_9STRA1.270e-2045.61Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A8K1FS37_PYTOL3.950e-2044.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98228contigM-pyrifera_M_contig98228:319..702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2.7e-16
Seed eggNOG ortholog157072.XP_008872306.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CXA4@1,2S4K9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.1441822-CDS-M-pyrifera_M_contig98228:318..7021622816900.1441822-CDS-M-pyrifera_M_contig98228:318..702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98228 319..702 +
1692278244.4249475-CDS-M-pyrifera_M_contig98228:318..7021692278244.4249475-CDS-M-pyrifera_M_contig98228:318..702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98228 319..702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98228.22630.1prot_M-pyrifera_M_contig98228.22630.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98228 319..702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98228.22630.1

>prot_M-pyrifera_M_contig98228.22630.1 ID=prot_M-pyrifera_M_contig98228.22630.1|Name=mRNA_M-pyrifera_M_contig98228.22630.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
ERREVRAREREALFRAPSAHDRLPEYNPLHDGNLSHFFASRSVRETLAGL
GMVTRDGRVVDLDRFKGKVHIIEQEFANVEREEELRRQEEEEMRRRVRAK
RHAAIERARKLEKMARIKEDRRLRREIL
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mRNA from alignment at M-pyrifera_M_contig98228:319..702+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98228.22630.1 ID=mRNA_M-pyrifera_M_contig98228.22630.1|Name=mRNA_M-pyrifera_M_contig98228.22630.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig98228:319..702+ (Macrocystis pyrifera P11B4 male)
GAGCGGCGGGAAGTGCGTGCTCGTGAGCGGGAGGCATTGTTTCGAGCCCC
CTCAGCGCACGACCGGCTGCCCGAGTACAATCCTCTGCACGATGGGAACT
TGAGCCATTTCTTCGCGAGCCGCAGCGTGCGTGAGACCTTGGCGGGCCTG
GGTATGGTGACGCGGGACGGGCGCGTGGTGGATTTGGACCGGTTCAAGGG
CAAGGTGCACATTATCGAGCAGGAGTTTGCGAATGTGGAGCGAGAAGAGG
AGCTGCGTCGGCAAGAGGAGGAGGAGATGCGGCGACGGGTGCGTGCGAAG
CGGCATGCGGCGATCGAGAGGGCTCGGAAACTGGAGAAAATGGCGCGCAT
CAAGGAAGACCGTCGGTTACGACGCGAAATCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98228:319..702+

>mRNA_M-pyrifera_M_contig98228.22630.1 ID=mRNA_M-pyrifera_M_contig98228.22630.1|Name=mRNA_M-pyrifera_M_contig98228.22630.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig98228:319..702+ (Macrocystis pyrifera P11B4 male)
GAGCGGCGGGAAGTGCGTGCTCGTGAGCGGGAGGCATTGTTTCGAGCCCC
CTCAGCGCACGACCGGCTGCCCGAGTACAATCCTCTGCACGATGGGAACT
TGAGCCATTTCTTCGCGAGCCGCAGCGTGCGTGAGACCTTGGCGGGCCTG
GGTATGGTGACGCGGGACGGGCGCGTGGTGGATTTGGACCGGTTCAAGGG
CAAGGTGCACATTATCGAGCAGGAGTTTGCGAATGTGGAGCGAGAAGAGG
AGCTGCGTCGGCAAGAGGAGGAGGAGATGCGGCGACGGGTGCGTGCGAAG
CGGCATGCGGCGATCGAGAGGGCTCGGAAACTGGAGAAAATGGCGCGCAT
CAAGGAAGACCGTCGGTTACGACGCGAAATCCTCGAGCGGCGGGAAGTGC
GTGCTCGTGAGCGGGAGGCATTGTTTCGAGCCCCCTCAGCGCACGACCGG
CTGCCCGAGTACAATCCTCTGCACGATGGGAACTTGAGCCATTTCTTCGC
GAGCCGCAGCGTGCGTGAGACCTTGGCGGGCCTGGGTATGGTGACGCGGG
ACGGGCGCGTGGTGGATTTGGACCGGTTCAAGGGCAAGGTGCACATTATC
GAGCAGGAGTTTGCGAATGTGGAGCGAGAAGAGGAGCTGCGTCGGCAAGA
GGAGGAGGAGATGCGGCGACGGGTGCGTGCGAAGCGGCATGCGGCGATCG
AGAGGGCTCGGAAACTGGAGAAAATGGCGCGCATCAAGGAAGACCGTCGG
TTACGACGCGAAATCCTC
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