mRNA_M-pyrifera_M_contig9821.22621.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9821.22621.1
Unique NamemRNA_M-pyrifera_M_contig9821.22621.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9821.22621.1 vs. uniprot
Match: D7FPV0_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV0_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.330e-32
Identity = 82/124 (66.13%), Postives = 95/124 (76.61%), Query Frame = 1 
Query:    1 LAMLASNAGEEGQEEEAFLVSKYDLVPESLADMVQILTMSGDEEVVYATIAAVAHAKMGQYSPLL-DAGKTGVEGAGGGAEGEKRQAVGADARTVAQMLVAEEKKVLGDLRVQLMSEILNEAGD 369
            LAM+ASN   +  E+EAF+VSKYDL+PESLADMVQILTMS DEEV YATIAAV+ AKMGQYSPLL DA +   EGA           +GADART+A+MLV EEKKVL DLR+QLMS IL++  D
Sbjct:  343 LAMVASNRDADEGEQEAFVVSKYDLLPESLADMVQILTMSNDEEVAYATIAAVSQAKMGQYSPLLQDAKRNAGEGA-----------IGADARTLARMLVNEEKKVLQDLRLQLMSVILDDNED 455
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BLAST of mRNA_M-pyrifera_M_contig9821.22621.1 vs. uniprot
Match: A0A836C8N7_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.630e-8
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:   40 EEEAFLVSKYDLVPESLADMVQILTMSGDEEVVYATIAAVAHAKMGQYSPLLDAGKTGVEGAGGGAEGEKRQAVGADARTVAQMLVAEEKKVLGDLRVQLMSEILNEAGDEESDG 384
            EEE F+++KYD++PE LA+ +Q L  + D  VVY  + AV   K+  Y+P               A   +  +V ADAR V + LV EE   L DL+ QLM E +   GDE+ +G
Sbjct:  355 EEEQFVLTKYDMLPEPLAEAIQSLLFTEDPLVVYGALVAVIAEKLQSYAP---------------AAAFEADSVRADARAVVEALVREETVFLTDLKAQLMRECMM-MGDEDGEG 453
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9821.22621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPV0_ECTSI1.330e-3266.13SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836C8N7_9STRA3.630e-838.26SET domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9821contigM-pyrifera_M_contig9821:1691..6123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue2.8e-28
Seed eggNOG ortholog2880.D7FPV0
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
EC2.1.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons3
Model size715
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9821.22621.1prot_M-pyrifera_M_contig9821.22621.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9821 1697..5864 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816899.7428737-UTR-M-pyrifera_M_contig9821:1690..16961622816899.7428737-UTR-M-pyrifera_M_contig9821:1690..1696Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9821 1691..1696 +
1692278244.231335-UTR-M-pyrifera_M_contig9821:1690..16961692278244.231335-UTR-M-pyrifera_M_contig9821:1690..1696Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9821 1691..1696 +
1622816899.7898996-UTR-M-pyrifera_M_contig9821:5864..61231622816899.7898996-UTR-M-pyrifera_M_contig9821:5864..6123Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9821 5865..6123 +
1692278244.2792535-UTR-M-pyrifera_M_contig9821:5864..61231692278244.2792535-UTR-M-pyrifera_M_contig9821:5864..6123Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9821 5865..6123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816899.7552729-CDS-M-pyrifera_M_contig9821:1696..17951622816899.7552729-CDS-M-pyrifera_M_contig9821:1696..1795Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9821 1697..1795 +
1692278244.2443426-CDS-M-pyrifera_M_contig9821:1696..17951692278244.2443426-CDS-M-pyrifera_M_contig9821:1696..1795Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9821 1697..1795 +
1622816899.7674534-CDS-M-pyrifera_M_contig9821:3253..34961622816899.7674534-CDS-M-pyrifera_M_contig9821:3253..3496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9821 3254..3496 +
1692278244.2533429-CDS-M-pyrifera_M_contig9821:3253..34961692278244.2533429-CDS-M-pyrifera_M_contig9821:3253..3496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9821 3254..3496 +
1622816899.7783687-CDS-M-pyrifera_M_contig9821:5756..58641622816899.7783687-CDS-M-pyrifera_M_contig9821:5756..5864Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9821 5757..5864 +
1692278244.2691448-CDS-M-pyrifera_M_contig9821:5756..58641692278244.2691448-CDS-M-pyrifera_M_contig9821:5756..5864Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9821 5757..5864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9821.22621.1

>prot_M-pyrifera_M_contig9821.22621.1 ID=prot_M-pyrifera_M_contig9821.22621.1|Name=mRNA_M-pyrifera_M_contig9821.22621.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MLASNAGEEGQEEEAFLVSKYDLVPESLADMVQILTMSGDEEVVYATIAA
VAHAKMGQYSPLLDAGKTGVEGAGGGAEGEKRQAVGADARTVAQMLVAEE
KKVLGDLRVQLMSEILNEAGDEESDGEEEDDDASAAREHKKGPKRRKAA*
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mRNA from alignment at M-pyrifera_M_contig9821:1691..6123+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9821.22621.1 ID=mRNA_M-pyrifera_M_contig9821.22621.1|Name=mRNA_M-pyrifera_M_contig9821.22621.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4433bp|location=Sequence derived from alignment at M-pyrifera_M_contig9821:1691..6123+ (Macrocystis pyrifera P11B4 male)
CTGGCGATGCTGGCCAGCAACGCCGGCGAGGAGGGTCAAGAAGAAGAGGC
GTTTCTTGTCTCCAAGTACGACCTGGTGCCGGAGAGTCTCGCGGACATGG
TTCAGGTCAGCTTCTTTACCCTTTTCCCACACCGAAAAAAAACAGTCCTG
CACTGCGAAATGCCAAGTAGCTTTCCCACAACAAGGGGTTACAGTAAGTG
CTGCTGATGGACCTCACTACTGTTAGTAGTTGGAAAATTTGTGCGAGATA
TTTTTTGCTGGAAAAAAAGTGTCAAGGCTTATTAAGTATCCCCTTTAGCA
CTGTATGTATGTGTGCACAGTAGGGGTCCCTGTATATTGCCGGTGCCCGA
TATAGTGCCCCCGGAATCGCTTGGCACCTGTATAGATGGGTTTCACCAGT
ATGGCAGGCAGTGTGCGGAATAGTGCCGGTGCCCGCTGTAATGCCAGTCT
ACTGGTCTGCTGGCACATGCCAGCGTTACACAGGGACCATTACTGAACCC
TCGTTTTGGGGGGAAAAAATACTAAGAAATAGTGTGGAAGAACGTTTTCC
ATTTTGAGGGGGAGTGCCAGGTAGATCTCACGCGCCTTTTGCCTGTCTTC
GTTGAGGTTTGCTTTTTTTGAAAGGTGCCGCAGGGTTTTGCTTCGAAAAG
TTGTGTGCACGCAGCCCCCACCCGCCCTTGGAATGCCAGGGCTCGTCGTT
CTGGTAGCAGGTTTGCGTCTGCCACAAGTAGACGAGCCCTGTCGCCCTTT
TGCCGCTCGCCTTTTTGTTTTGTGTCCTCCGGCGGACGACATTGGTCCAG
CTTGAAAGGGCTGAATGAAGTATTTTCGCGATAAAAAAAGCAGAGCACGA
CTACTGTAGCGGGGAAAAGGGGAGAGCAGGCTGCTATTAAAATATATGAA
CCCGGATCCGAGTTACTGTGATCAGGAGGGAGAGAGAAAACTAATACAGG
ACAAACATAATAAAGGGCATGAAATCAAAAAAAAAAATCGAAATTGTTGA
TACTGTTAATAGGAGTCCACACTATCAGTAGGACATCTTGGTTTCGAGAT
TTTTCGGAGGCGGTTTCTATATGGCAGTTTTGTTTCAATAATTTCGTCGA
ATCTCGGCGAAGGTCCGAGCAGCCCTCTCACCATACGAAACACTCTCCCA
CAAGTGTATATCAGTTCTACTGCTGTGGTTATTCCCGTACCGTCGTGTGA
TGACGCCCCCACGTTCCTTTTTTTTGTTGATCCTGACCGAAATGACCCCA
CGTTTTTTTTCTTTTTGTCAGATCCTGACCACGACCCGACCTGTTTCATG
TTTCAACAATATTTGCTGCAACTATATGTACGTCAGCTGTGAGTTGGACC
GATTGAGTGGTTGATACATACCGAACTCGACTTTGCAAGCTGCTTTTATG
TAGATCCTGATCACGACCCCTGCCAGGTATGGGTTTTGTTTTTTGTTTTG
TAGATGCCGACCGTGACCCCCACGTGTTTTATTTTGGTGTACCGTATACA
TGTATAAATATCCTGACCATGACCGCACGTCTTTCTGTTGTTACTGCTGT
TGTGTACTGGTAGATCCTGACCATGAGCGGCGACGAAGAAGTGGTGTACG
CGACCATCGCCGCTGTGGCCCACGCCAAGATGGGACAGTACAGCCCTTTA
CTGGACGCGGGGAAGACCGGGGTAGAAGGCGCAGGGGGGGGCGCCGAGGG
AGAAAAACGGCAGGCTGTCGGCGCCGACGCCCGAACCGTGGCGCAGATGC
TCGTGGCGGAGGAGAAGAAGGTCCTCGGGGACTTGAGAGTCCAGCTCATG
AGCGAGGTGATCGAATGAAGCCGTTATCCGCTTTGTTTGGGTGTTGAAGA
TATTAGCGACTACAACTATGCTAACTTTAGTGTTTTTTCAGCCGTATATC
ATTTACAAGCAGCGTCAGCGACTGGCAGTAGGGGAAGGGTCATGCTGCTC
GCCCCGCGACTTACGAGTCGTCGCGTTGTATCGTACAACACGCAAGATTT
AAAGCACCCCTTAGGAAGAATTTCAGTTACGGTTTTCTCCAAAACATGGG
GGAGGGGGGGGGGGCACACACACAACGAAAAATGGTGGCTTTGGAAAAAT
TTTGGAAAATATTTCGTCGAGAAGGTCGCGTAGACGCATCGCTGGGCGTG
TTCAGTACGCCCCCCCCCACCCGTTGTCGAGAAACCCAGCTTTGGAACGA
TAATCGTATGACGGGGGGGTGTTATCTTGCGTGCTACCTGGTACCTGGTA
TACGGTATTATCTCGGAAACCATGCTGTGTCACCCCCCAACTATGCGCAG
TAGCCATCGCTGTAATCGTCACTTGCTGTCGTCAAGTTTCCCCCTCTGAA
GCTACGTGAGGGCTATAGTCGTTGTCGGTGTGTGTATTTCGTGTCCCTCC
CTCGCGCGATGGGAAGGTAAAATGAGGAGCTATCGAACCGCTGCTGTGCC
TAGATGATAACATGGGGGGGTGGGGCAGGAGGCCTGGGTTTCTTGAAATT
ACAGCTTAGAGCTATCGATGCACCATGCACTGGACCGTCTCGGCTCGAAA
CGATAACCGCCTGCCCGTTTAGATTGCAGGTATTGTATGATATGATGCGT
GTAGGGTTAGGGTTCCGGGTCGGGGTGATGGCCGCCGACAGCCGAGGCCG
AAAAAACCCTTGTCTTCGGGAGAAAAAAAAAAAAGCCCTCGGTTCACTGC
TGTTTGTTTTTTCACCAATTTACCAAGGAAAGGCTGCTGCTGGTGAAAAG
TGCAAAACCCCGCGTGGACCGCGCTCCGGTTACGTGGAAAAAGCTGTTGG
AAGTAGAGGCGAATGTAGGTGCCTGCGCGGTGCAGTGCCAAAAGGTTGAA
AAGTAAAACTTACCAGCACGAGTGTGGAAACTTGGAAAAAATGCAGTAAG
TGACCATGGCTTTAGTCTCCCGACAAGACCTTCTAAAATAGCTCACTGAA
ACCAACATCATGTAAGGCGGGCACATTCGTGAGGGAGTTCCTCCAGCGAG
GGCAGATCTACAGCGGTGTGTCTCCTGCGAACCATCTTTGACCAGCAGTA
GCCGTTACATGGCCGTTACACGGACACATCATGGCCGTTATACAGGCAAA
TGCATTGCTGTCATACGTAGCAGGGAGGGGGGCACAGCAGAATGGTCATC
CTGGCACTCTGATGGAATCTCAAGACCTAACGTCTGCATGATACCTGTTA
CATAAATTGGGGTGGGAACCGAGTAAGCGACGCTCACTCCTTCGTGTATA
CTGTGTTTTGCCCCCCTCTCATCTGGGGTGTTCCTGAACAACACGCAAGA
TAACTCACTCACCCATTGAGCCGATTTTTCCCAAAAACATGCCTCACGGG
GGGTCACACCACGAAACTGGCGAGATATTTCCATACCGGTAAGATGCATC
GCTTGGCGTTTGCACTCTCCGCCATGTCGAGAAAAACACTTTCGCAAATC
GTCCTAGGGAGGTGTGGTATCTGATCACACGCTTATCGATGGTAGTTTTT
CACTTCCCTCATTAAAACAGCAGTAGAACACTGGCACCTGAAGCCTCTCC
CTTACACGGCTACTTCTGTAGCACCTGGTACAGGGTATACATGACGCCAG
CTACTTGGCCTGTAGGGAAACGAGCACTCGAGAGAAGGGTCAGGCTGAGA
TTCAACACGAAAACAAGAATTTCTCAAGGAAGGCAGGCTTGAGATTCACC
CGAAAACAAGAAACCTCGGGAGTATTTGATGCTGAAAGCAGTGTGAAACG
CTCCCATTCTCGAGTAGTATCTAGCCTGGACTACTGTACGTAGCTCTCTC
CTGCTTCTTCCTACGATGTGAATTGATGCACGGAACAGGTGGTAGAGCCA
TCCAAGTACACCAGCGAAAGTACGAGCGATGGGGTGAACGCCCACACCTC
TCGCCGTGGTTTGTGCAAAATCAAGATACACGAACAGGTGGCCATGAACC
ACCCGAAGACAACAGCAATCAGCAATCCATACATCGTACCTATCTTACGT
ATACATGCACGAACGATCTGACCACTAACCCTCGCCTCTCGCCGCGTTTG
TATTTTTGCGTCCCAGATTTTAAACGAAGCGGGGGATGAAGAAAGTGACG
GCGAAGAAGAGGATGACGACGCTAGCGCAGCACGGGAACACAAGAAAGGA
CCCAAGAGGCGCAAGGCAGCATAACGACAGCAGCAGCAGCAGCAGCAATA
CAATACACAACAGCACTATAAGGGTAGAAGCGCAGTACCTGTAGTAGGTA
GATTTGGCACGCTGGACTGATGGAAAATTTTCCTGCCAAGTGTTGTCGTA
AGACAGTAAAAGCTCTCGTCCGTCCATGTGCACTCGAGACATTACACGCC
GAAAAAGCGAAACAGAACAAACCCTGCTGACAAGAACTACCAAAACGTGT
ACGTACGCGTGTACGCCCTCGTGATGAATAAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9821:1691..6123+

>mRNA_M-pyrifera_M_contig9821.22621.1 ID=mRNA_M-pyrifera_M_contig9821.22621.1|Name=mRNA_M-pyrifera_M_contig9821.22621.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig9821:1691..6123+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCCAGCAACGCCGGCGAGGAGGGTCAAGAAGAAGAGGCGTTTCT
TGTCTCCAAGTACGACCTGGTGCCGGAGAGTCTCGCGGACATGGTTCAGA
TGCTGGCCAGCAACGCCGGCGAGGAGGGTCAAGAAGAAGAGGCGTTTCTT
GTCTCCAAGTACGACCTGGTGCCGGAGAGTCTCGCGGACATGGTTCAGAT
CCTGACCATGAGCGGCGACGAAGAAGTGGTGTACGCGACCATCGCCGCTG
TGGCCCACGCCAAGATGGGACAGTACAGCCCTTTACTGGACGCGGGGAAG
ACCGGGGTAGAAGGCGCAGGGGGGGGCGCCGAGGGAGAAAAACGGCAGGC
TGTCGGCGCCGACGCCCGAACCGTGGCGCAGATGCTCGTGGCGGAGGAGA
AGAAGGTCCTCGGGGACTTGAGAGTCCAGCTCATGAGCGAGATCCTGACC
ATGAGCGGCGACGAAGAAGTGGTGTACGCGACCATCGCCGCTGTGGCCCA
CGCCAAGATGGGACAGTACAGCCCTTTACTGGACGCGGGGAAGACCGGGG
TAGAAGGCGCAGGGGGGGGCGCCGAGGGAGAAAAACGGCAGGCTGTCGGC
GCCGACGCCCGAACCGTGGCGCAGATGCTCGTGGCGGAGGAGAAGAAGGT
CCTCGGGGACTTGAGAGTCCAGCTCATGAGCGAGATTTTAAACGAAGCGG
GGGATGAAGAAAGTGACGGCGAAGAAGAGGATGACGACGCTAGCGCAGCA
CGGGAACACAAGAAAGGACCCAAGAGGCGCAAGGCAGCATAAATTTTAAA
CGAAGCGGGGGATGAAGAAAGTGACGGCGAAGAAGAGGATGACGACGCTA
GCGCAGCACGGGAACACAAGAAAGGACCCAAGAGGCGCAAGGCAGCATAA
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