mRNA_M-pyrifera_M_contig9811.22596.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9811.22596.1
Unique NamemRNA_M-pyrifera_M_contig9811.22596.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9811.22596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9811contigM-pyrifera_M_contig9811:8560..9728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size316
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9811.22596.1prot_M-pyrifera_M_contig9811.22596.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9811 8660..9680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.6727357-UTR-M-pyrifera_M_contig9811:8559..86591622816898.6727357-UTR-M-pyrifera_M_contig9811:8559..8659Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9811 8560..8659 -
1692278243.6681278-UTR-M-pyrifera_M_contig9811:8559..86591692278243.6681278-UTR-M-pyrifera_M_contig9811:8559..8659Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9811 8560..8659 -
1622816898.7087393-UTR-M-pyrifera_M_contig9811:9680..97281622816898.7087393-UTR-M-pyrifera_M_contig9811:9680..9728Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9811 9681..9728 -
1692278243.703823-UTR-M-pyrifera_M_contig9811:9680..97281692278243.703823-UTR-M-pyrifera_M_contig9811:9680..9728Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9811 9681..9728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.6854486-CDS-M-pyrifera_M_contig9811:8659..87951622816898.6854486-CDS-M-pyrifera_M_contig9811:8659..8795Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9811 8660..8795 -
1692278243.6803787-CDS-M-pyrifera_M_contig9811:8659..87951692278243.6803787-CDS-M-pyrifera_M_contig9811:8659..8795Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9811 8660..8795 -
1622816898.6959836-CDS-M-pyrifera_M_contig9811:9648..96801622816898.6959836-CDS-M-pyrifera_M_contig9811:9648..9680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9811 9649..9680 -
1692278243.6915355-CDS-M-pyrifera_M_contig9811:9648..96801692278243.6915355-CDS-M-pyrifera_M_contig9811:9648..9680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9811 9649..9680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9811.22596.1

>prot_M-pyrifera_M_contig9811.22596.1 ID=prot_M-pyrifera_M_contig9811.22596.1|Name=mRNA_M-pyrifera_M_contig9811.22596.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MERVGRKSRFRHHGHINTREPPRAVCAKGAPIKTNCRAFVGSGGPASTTR
GEGFA*
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mRNA from alignment at M-pyrifera_M_contig9811:8560..9728-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9811.22596.1 ID=mRNA_M-pyrifera_M_contig9811.22596.1|Name=mRNA_M-pyrifera_M_contig9811.22596.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1169bp|location=Sequence derived from alignment at M-pyrifera_M_contig9811:8560..9728- (Macrocystis pyrifera P11B4 male)
ACGGAGAGCAAGGGCCCATTGGTGTTAACGCGAACGCCGGCGTTTTCCAT
GGAGAGGGTAGGGAGGAAATCTCGATTCAGGTGAGCAGCACTGGGACTAA
GTAGTAGTCACCGGTACTTCTTTTCGTCGCCGTTTTTGCGCACTTGTACC
AAGCTTTGAGGGTAAATTAGCCGTTTGATTTTACCCCAACCTCTACCTAC
TTGTTGGTGGTGACTGACGCTGCACACCACCTCTGTGAGCTATAAGCCTA
CCGTTGTGCCTTTTCGTGCAGTGCCAAAGCAGTAGGTAGGGTACGGCAGG
TCGTGCCGTATATGAATCAGCAGTACCGGCGATATGGGTGTAGTTTTTGT
TGTACTGAGTGCCGTGTTATATGTACCGTGACTCTTGTTTCCCCTGCCAC
CGCCGTCGGCCGGAGTGTGCATGCGCCTAGAGGTTTCCATGCGATTCAGT
ATCCTACTTTGCCACGGCGCCGGCAGTAGTTTGCATGTTTTAGGATTGGC
GAATAACTATTTTTCAAAATTCCGTGCAGAAGACTTCGCGGAGGCGACCC
TTTGCCATAAACCTTCGCGGTAGTGAAACAGCCCCTCCGCCAGTAGGGCG
GGCGCCAAGACGATGTAGACATAACACTGGAACGGGACGGGTGTTGCTGT
GTTCACACGTGCCGGAGGATAGCTGCACAGGTGCGAAACTGAAGGAGAAC
AACGCGGTCGCGGATATGGAAGCGGTAAAGAACGTCGTTGTTCCCAGTTT
GAGCAACAAGGCCGGCCACCTCGAGGCGTACTGTTAAAACAGCAAGTGAA
ACCCAGCCCGTTTTCGTGTTTTAAAGTTTCGGATGCTCGAGTGAGGGCCT
GTATAATTCCAATAATTTTCTTGCGGCATTTGGCTAAATGACACGTCCTT
CCCACGTTCGACGTCTCACGGGTGGTAACGCAGGCATCACGGTCACATTA
ACACCAGGGAACCTCCAAGGGCTGTTTGCGCAAAAGGTGCACCCATCAAG
ACCAACTGCCGCGCTTTCGTCGGTAGCGGAGGCCCCGCAAGTACCACTCG
TGGCGAAGGCTTTGCTTGAATCGCTGATGACCTTCAGTTTGAGCAGATAG
TATGCAGAACACCAAACTGCCCGAGATCAGGGGGGTGCAGAGGGTAGCTG
TGCTGTCGTCAATGCCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9811:8560..9728-

>mRNA_M-pyrifera_M_contig9811.22596.1 ID=mRNA_M-pyrifera_M_contig9811.22596.1|Name=mRNA_M-pyrifera_M_contig9811.22596.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig9811:8560..9728- (Macrocystis pyrifera P11B4 male)
ATGGAGAGGGTAGGGAGGAAATCTCGATTCAGATGGAGAGGGTAGGGAGG
AAATCTCGATTCAGGCATCACGGTCACATTAACACCAGGGAACCTCCAAG
GGCTGTTTGCGCAAAAGGTGCACCCATCAAGACCAACTGCCGCGCTTTCG
TCGGTAGCGGAGGCCCCGCAAGTACCACTCGTGGCGAAGGCTTTGCTTGA
GCATCACGGTCACATTAACACCAGGGAACCTCCAAGGGCTGTTTGCGCAA
AAGGTGCACCCATCAAGACCAACTGCCGCGCTTTCGTCGGTAGCGGAGGC
CCCGCAAGTACCACTCGTGGCGAAGGCTTTGCTTGA
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