mRNA_M-pyrifera_M_contig98090.22585.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98090.22585.1
Unique NamemRNA_M-pyrifera_M_contig98090.22585.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98090.22585.1 vs. uniprot
Match: A0A7C4P4G4_9BACT (Peptidase_M43 domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C4P4G4_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 7.620e-5
Identity = 28/91 (30.77%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:   73 VNKTFLVTLHITQDIDGILAADAARLTAISNAIQQASDYYAPIGVSFEVGDVFYIDNYNLDVIET-EEELTELSTKYDQPNRINLFVFSAY 342
            +NKTF + +H+  D  G      A    +  A+  A+ ++API   FE+ +  Y +N+  D +    EE+ E++TKY+   RINL++   +
Sbjct:   76 LNKTFTIVVHVFPDSLGRFNMTEAT---VRQALDNANPFFAPICARFEICEFRYHENWQYDTLRRPNEEIPEITTKYNVERRINLYLVGFF 163
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98090.22585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C4P4G4_9BACT7.620e-530.77Peptidase_M43 domain-containing protein n=1 Tax=Ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98090contigM-pyrifera_M_contig98090:357..701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.1407526-CDS-M-pyrifera_M_contig98090:356..7011622816898.1407526-CDS-M-pyrifera_M_contig98090:356..701Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98090 357..701 +
1692278243.3922775-CDS-M-pyrifera_M_contig98090:356..7011692278243.3922775-CDS-M-pyrifera_M_contig98090:356..701Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98090 357..701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98090.22585.1prot_M-pyrifera_M_contig98090.22585.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98090 357..701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98090.22585.1

>prot_M-pyrifera_M_contig98090.22585.1 ID=prot_M-pyrifera_M_contig98090.22585.1|Name=mRNA_M-pyrifera_M_contig98090.22585.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MLSCLLILLAITSASANDDSRPTQVNKTFLVTLHITQDIDGILAADAARL
TAISNAIQQASDYYAPIGVSFEVGDVFYIDNYNLDVIETEEELTELSTKY
DQPNRINLFVFSAYD
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mRNA from alignment at M-pyrifera_M_contig98090:357..701+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98090.22585.1 ID=mRNA_M-pyrifera_M_contig98090.22585.1|Name=mRNA_M-pyrifera_M_contig98090.22585.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig98090:357..701+ (Macrocystis pyrifera P11B4 male)
ATGCTGTCTTGTTTGCTGATATTATTGGCAATAACTTCTGCTAGTGCAAA
CGACGATTCAAGACCCACCCAGGTCAATAAAACTTTCCTGGTAACCCTTC
ATATAACCCAGGACATTGACGGGATTCTTGCGGCTGACGCAGCTCGTCTC
ACAGCAATCTCGAATGCAATTCAACAAGCTAGTGATTACTATGCCCCAAT
TGGCGTTTCATTTGAGGTCGGTGATGTGTTCTACATCGATAACTACAACC
TGGATGTCATCGAAACCGAAGAGGAACTCACAGAACTGTCCACCAAGTAT
GATCAACCCAATAGAATAAACCTGTTCGTTTTTTCAGCTTATGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98090:357..701+

>mRNA_M-pyrifera_M_contig98090.22585.1 ID=mRNA_M-pyrifera_M_contig98090.22585.1|Name=mRNA_M-pyrifera_M_contig98090.22585.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig98090:357..701+ (Macrocystis pyrifera P11B4 male)
ATGCTGTCTTGTTTGCTGATATTATTGGCAATAACTTCTGCTAGTGCAAA
CGACGATTCAAGACCCACCCAGGTCAATAAAACTTTCCTGGTAACCCTTC
ATATAACCCAGGACATTGACGGGATTCTTGCGGCTGACGCAGCTCGTCTC
ACAGCAATCTCGAATGCAATTCAACAAGCTAGTGATTACTATGCCCCAAT
TGGCGTTTCATTTGAGGTCGGTGATGTGTTCTACATCGATAACTACAACC
TGGATGTCATCGAAACCGAAGAGGAACTCACAGAACTGTCCACCAAGTAT
GATCAACCCAATAGAATAAACCTGTTCGTTTTTTCAGCTTATGATATGCT
GTCTTGTTTGCTGATATTATTGGCAATAACTTCTGCTAGTGCAAACGACG
ATTCAAGACCCACCCAGGTCAATAAAACTTTCCTGGTAACCCTTCATATA
ACCCAGGACATTGACGGGATTCTTGCGGCTGACGCAGCTCGTCTCACAGC
AATCTCGAATGCAATTCAACAAGCTAGTGATTACTATGCCCCAATTGGCG
TTTCATTTGAGGTCGGTGATGTGTTCTACATCGATAACTACAACCTGGAT
GTCATCGAAACCGAAGAGGAACTCACAGAACTGTCCACCAAGTATGATCA
ACCCAATAGAATAAACCTGTTCGTTTTTTCAGCTTATGAT
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