mRNA_M-pyrifera_M_contig110756.2256.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110756.2256.1
Unique NamemRNA_M-pyrifera_M_contig110756.2256.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110756.2256.1 vs. uniprot
Match: L8GRT4_ACACA (Peptide-aspartate beta-dioxygenase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GRT4_ACACA)

HSP 1 Score: 60.5 bits (145), Expect = 2.080e-9
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 YEVVLEPGDVLYIPPFHFHHVTVVHSDAPSISVSTHSESHQAWLRERIM 147
            +EVVL PGDVLY+PP+ FH VTVV  D  SISVS H+ES +  LRE +M
Sbjct:  311 HEVVLHPGDVLYLPPYWFHEVTVVGDDV-SISVSVHTESDEVALREAVM 358
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BLAST of mRNA_M-pyrifera_M_contig110756.2256.1 vs. uniprot
Match: A0A6B2LAI5_9EUKA (JmjC domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAI5_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 1.930e-6
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    4 EVVLEPGDVLYIPPFHFHHVTVVHSDAPSISVSTHSESHQAWLRE 138
            EVVL PGDVLYIPP+ FH VT V  +  S+SVS H+ES Q+ +R+
Sbjct:  176 EVVLSPGDVLYIPPYWFHDVTAVGVNV-SMSVSIHTESDQSHIRD 219
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110756.2256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
L8GRT4_ACACA2.080e-963.27Peptide-aspartate beta-dioxygenase n=1 Tax=Acantha... [more]
A0A6B2LAI5_9EUKA1.930e-660.00JmjC domain-containing protein n=1 Tax=Arcella int... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110756contigM-pyrifera_M_contig110756:86..232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.366289-CDS-M-pyrifera_M_contig110756:85..2321622815619.366289-CDS-M-pyrifera_M_contig110756:85..232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110756 86..232 +
1692277490.5003893-CDS-M-pyrifera_M_contig110756:85..2321692277490.5003893-CDS-M-pyrifera_M_contig110756:85..232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110756 86..232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110756.2256.1prot_M-pyrifera_M_contig110756.2256.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110756 86..232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110756.2256.1

>prot_M-pyrifera_M_contig110756.2256.1 ID=prot_M-pyrifera_M_contig110756.2256.1|Name=mRNA_M-pyrifera_M_contig110756.2256.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
YEVVLEPGDVLYIPPFHFHHVTVVHSDAPSISVSTHSESHQAWLRERIM
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mRNA from alignment at M-pyrifera_M_contig110756:86..232+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110756.2256.1 ID=mRNA_M-pyrifera_M_contig110756.2256.1|Name=mRNA_M-pyrifera_M_contig110756.2256.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig110756:86..232+ (Macrocystis pyrifera P11B4 male)
TACGAGGTGGTGTTGGAGCCGGGTGACGTGCTCTACATTCCGCCCTTCCA
CTTCCACCACGTGACAGTGGTGCACAGCGATGCGCCAAGCATCTCTGTCA
GCACTCACTCTGAGTCACACCAGGCGTGGCTGCGCGAAAGGATCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110756:86..232+

>mRNA_M-pyrifera_M_contig110756.2256.1 ID=mRNA_M-pyrifera_M_contig110756.2256.1|Name=mRNA_M-pyrifera_M_contig110756.2256.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig110756:86..232+ (Macrocystis pyrifera P11B4 male)
TACGAGGTGGTGTTGGAGCCGGGTGACGTGCTCTACATTCCGCCCTTCCA
CTTCCACCACGTGACAGTGGTGCACAGCGATGCGCCAAGCATCTCTGTCA
GCACTCACTCTGAGTCACACCAGGCGTGGCTGCGCGAAAGGATCATGTAC
GAGGTGGTGTTGGAGCCGGGTGACGTGCTCTACATTCCGCCCTTCCACTT
CCACCACGTGACAGTGGTGCACAGCGATGCGCCAAGCATCTCTGTCAGCA
CTCACTCTGAGTCACACCAGGCGTGGCTGCGCGAAAGGATCATG
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