mRNA_M-pyrifera_M_contig110746.2254.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110746.2254.1
Unique NamemRNA_M-pyrifera_M_contig110746.2254.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110746.2254.1 vs. uniprot
Match: A0A2R5G3D4_9STRA (Leucine-rich repeat-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3D4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.800e-8
Identity = 24/54 (44.44%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 VSRMTNLREIFLRRNKVSSLPRELSRLKQLECVYLEDNQLTDDGIPSSLTALQA 162
            + ++  L E++LR+NKVS+LP ++ +LK+L+ +YLEDN++T+ G P+S  +L A
Sbjct:   65 IGKLVKLTELYLRKNKVSALPEDIGQLKELDTIYLEDNEMTEAGFPASFGSLSA 118
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110746.2254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2R5G3D4_9STRA2.800e-844.44Leucine-rich repeat-containing protein 1 n=1 Tax=H... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110746contigM-pyrifera_M_contig110746:221..592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.2782888-UTR-M-pyrifera_M_contig110746:220..2291622815619.2782888-UTR-M-pyrifera_M_contig110746:220..229Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110746 221..229 +
1692277490.4566786-UTR-M-pyrifera_M_contig110746:220..2291692277490.4566786-UTR-M-pyrifera_M_contig110746:220..229Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110746 221..229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.2888384-CDS-M-pyrifera_M_contig110746:229..5921622815619.2888384-CDS-M-pyrifera_M_contig110746:229..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110746 230..592 +
1692277490.4670203-CDS-M-pyrifera_M_contig110746:229..5921692277490.4670203-CDS-M-pyrifera_M_contig110746:229..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110746 230..592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110746.2254.1prot_M-pyrifera_M_contig110746.2254.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110746 230..592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110746.2254.1

>prot_M-pyrifera_M_contig110746.2254.1 ID=prot_M-pyrifera_M_contig110746.2254.1|Name=mRNA_M-pyrifera_M_contig110746.2254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MTNLREIFLRRNKVSSLPRELSRLKQLECVYLEDNQLTDDGIPSSLTALQ
AMTGITLQRNRLTRVPDPILFWRQLEELHVDGNNIELLPDAVCDLVQLRE
LGISNNRIRRLPRELGRLVDL
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mRNA from alignment at M-pyrifera_M_contig110746:221..592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110746.2254.1 ID=mRNA_M-pyrifera_M_contig110746.2254.1|Name=mRNA_M-pyrifera_M_contig110746.2254.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig110746:221..592+ (Macrocystis pyrifera P11B4 male)
GTGTCTCGCATGACCAACCTGCGTGAGATCTTCCTGCGGCGGAACAAGGT
GTCCTCCCTTCCGCGCGAGCTCAGCCGGCTGAAGCAACTGGAGTGCGTGT
ACCTGGAGGACAACCAGCTGACAGACGACGGCATCCCCTCCTCCCTGACT
GCGCTGCAGGCCATGACTGGCATCACACTGCAGCGCAACCGGCTGACACG
CGTGCCGGATCCCATCCTGTTCTGGCGGCAGCTGGAAGAGTTGCACGTGG
ACGGCAACAACATCGAGCTGCTCCCTGACGCGGTGTGTGACCTGGTGCAG
CTGCGCGAGCTAGGCATCTCCAACAACCGCATCCGGCGGCTTCCGCGGGA
GCTGGGCCGCCTCGTCGACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110746:221..592+

>mRNA_M-pyrifera_M_contig110746.2254.1 ID=mRNA_M-pyrifera_M_contig110746.2254.1|Name=mRNA_M-pyrifera_M_contig110746.2254.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig110746:221..592+ (Macrocystis pyrifera P11B4 male)
ATGACCAACCTGCGTGAGATCTTCCTGCGGCGGAACAAGGTGTCCTCCCT
TCCGCGCGAGCTCAGCCGGCTGAAGCAACTGGAGTGCGTGTACCTGGAGG
ACAACCAGCTGACAGACGACGGCATCCCCTCCTCCCTGACTGCGCTGCAG
GCCATGACTGGCATCACACTGCAGCGCAACCGGCTGACACGCGTGCCGGA
TCCCATCCTGTTCTGGCGGCAGCTGGAAGAGTTGCACGTGGACGGCAACA
ACATCGAGCTGCTCCCTGACGCGGTGTGTGACCTGGTGCAGCTGCGCGAG
CTAGGCATCTCCAACAACCGCATCCGGCGGCTTCCGCGGGAGCTGGGCCG
CCTCGTCGACCTCATGACCAACCTGCGTGAGATCTTCCTGCGGCGGAACA
AGGTGTCCTCCCTTCCGCGCGAGCTCAGCCGGCTGAAGCAACTGGAGTGC
GTGTACCTGGAGGACAACCAGCTGACAGACGACGGCATCCCCTCCTCCCT
GACTGCGCTGCAGGCCATGACTGGCATCACACTGCAGCGCAACCGGCTGA
CACGCGTGCCGGATCCCATCCTGTTCTGGCGGCAGCTGGAAGAGTTGCAC
GTGGACGGCAACAACATCGAGCTGCTCCCTGACGCGGTGTGTGACCTGGT
GCAGCTGCGCGAGCTAGGCATCTCCAACAACCGCATCCGGCGGCTTCCGC
GGGAGCTGGGCCGCCTCGTCGACCTC
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