mRNA_M-pyrifera_M_contig110744.2253.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110744.2253.1
Unique NamemRNA_M-pyrifera_M_contig110744.2253.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110744.2253.1 vs. uniprot
Match: A0A3D2IGX3_9BACT (Endonuclease n=3 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3D2IGX3_9BACT)

HSP 1 Score: 87.0 bits (214), Expect = 4.630e-21
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 EVFPTSYEAIQAEKYIKGKSRKKKEALIQQKNPSFAFLNRITLGYWPPK 147
            E FP+SYEAIQAEKYIKGKSRKKKE +I+ KNPSFAFLNR  LGYWPPK
Sbjct:   55 ENFPSSYEAIQAEKYIKGKSRKKKEQIIRDKNPSFAFLNRKILGYWPPK 103
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BLAST of mRNA_M-pyrifera_M_contig110744.2253.1 vs. uniprot
Match: A0A3M8FPB4_9BACT (GIY-YIG nuclease family protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8FPB4_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 3.630e-15
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 EVFPTSYEAIQAEKYIKGKSRKKKEALIQQKNPSFAFLNRITLGYWPPK 147
            E F +S+EAIQAEKYIKGKSRKKKE +IQ  NPS AFLN    G WPPK
Sbjct:   55 EAFASSHEAIQAEKYIKGKSRKKKEMIIQDMNPSRAFLNTKVCGIWPPK 103
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BLAST of mRNA_M-pyrifera_M_contig110744.2253.1 vs. uniprot
Match: A0A2D9FZ05_9BACT (Endonuclease n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FZ05_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 1.940e-14
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 EVFPTSYEAIQAEKYIKGKSRKKKEALIQQKNPSFAFLNRITLGYWPPK 147
            +VFPT YEAIQAEK IKGK R+ KE LI++ NP + FLN+I LG WPP+
Sbjct:   54 DVFPTMYEAIQAEKRIKGKKRQWKERLIEENNPDWKFLNKIVLGEWPPR 102
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BLAST of mRNA_M-pyrifera_M_contig110744.2253.1 vs. uniprot
Match: A0A3D2IDN6_9BACT (Endonuclease n=3 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3D2IDN6_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.600e-11
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 EVFPTSYEAIQAEKYIKGKSRKKKEALIQQKNPSFAFLNRITLGYWPPK 147
            +VFPT  EAI+AEK IKGKSRK KE LI   NP + FLN+  +G WPPK
Sbjct:   54 DVFPTMREAIEAEKRIKGKSRKWKEELISSFNPEWKFLNKEIVGEWPPK 102
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BLAST of mRNA_M-pyrifera_M_contig110744.2253.1 vs. uniprot
Match: A0A6A8Q2G1_9BACT (GIY-YIG nuclease family protein n=2 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q2G1_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 4.980e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    7 FPTSYEAIQAEKYIKGKSRKKKEALIQQKNPSFAFLNRITLGYWPP 144
            FPT  EAI+AEKYIKGKSR  KE LI ++NP +  LN+  LG WPP
Sbjct:   56 FPTMQEAIEAEKYIKGKSRSWKEQLITERNPEWNALNKDVLGEWPP 101
[Close]
BLAST of mRNA_M-pyrifera_M_contig110744.2253.1 vs. uniprot
Match: A0A3M8FZB7_9BACT (GIY-YIG nuclease family protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8FZB7_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 2.250e-10
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 EVFPTSYEAIQAEKYIKGKSRKKKEALIQQKNPSFAFLNRITLGYWPPK 147
            E F  +Y+AIQ+EKYIKGK+R+ KE LI + N  + F+N    GYWPPK
Sbjct:   55 ESFSNAYDAIQSEKYIKGKTRRWKENLINEFNTEWRFMNEEIFGYWPPK 103
[Close]
BLAST of mRNA_M-pyrifera_M_contig110744.2253.1 vs. uniprot
Match: A0A846FBY3_9CYAN (GIY-YIG nuclease family protein n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FBY3_9CYAN)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-10
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    7 FPTSYEAIQAEKYIKGKSRKKKEALIQQKNPSFAFLNRITLGYWPP 144
            FPT   AI+AEKYIKGK+R  KEALI ++NP + FLN   +G WPP
Sbjct:   58 FPTMRAAIEAEKYIKGKNRVWKEALIARQNPEWRFLNEDIVGVWPP 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110744.2253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A3D2IGX3_9BACT4.630e-2183.67Endonuclease n=3 Tax=Bacteroidetes/Chlorobi group ... [more]
A0A3M8FPB4_9BACT3.630e-1571.43GIY-YIG nuclease family protein n=1 Tax=Balneola s... [more]
A0A2D9FZ05_9BACT1.940e-1465.31Endonuclease n=2 Tax=Balneolaceae TaxID=1813606 Re... [more]
A0A3D2IDN6_9BACT1.600e-1163.27Endonuclease n=3 Tax=Bacteroidetes/Chlorobi group ... [more]
A0A6A8Q2G1_9BACT4.980e-1163.04GIY-YIG nuclease family protein n=2 Tax=Balneolace... [more]
A0A3M8FZB7_9BACT2.250e-1055.10GIY-YIG nuclease family protein n=1 Tax=Balneola s... [more]
A0A846FBY3_9CYAN3.260e-1060.87GIY-YIG nuclease family protein n=1 Tax=Cyanothece... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110744contigM-pyrifera_M_contig110744:3..152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.2419708-CDS-M-pyrifera_M_contig110744:2..1521622815619.2419708-CDS-M-pyrifera_M_contig110744:2..152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110744 3..152 +
1692277490.4468791-CDS-M-pyrifera_M_contig110744:2..1521692277490.4468791-CDS-M-pyrifera_M_contig110744:2..152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110744 3..152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110744.2253.1prot_M-pyrifera_M_contig110744.2253.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110744 3..152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110744.2253.1

>prot_M-pyrifera_M_contig110744.2253.1 ID=prot_M-pyrifera_M_contig110744.2253.1|Name=mRNA_M-pyrifera_M_contig110744.2253.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
EVFPTSYEAIQAEKYIKGKSRKKKEALIQQKNPSFAFLNRITLGYWPPK*
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mRNA from alignment at M-pyrifera_M_contig110744:3..152+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110744.2253.1 ID=mRNA_M-pyrifera_M_contig110744.2253.1|Name=mRNA_M-pyrifera_M_contig110744.2253.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig110744:3..152+ (Macrocystis pyrifera P11B4 male)
GAAGTATTTCCAACGTCATATGAAGCCATTCAAGCCGAGAAGTATATAAA
AGGGAAAAGCAGGAAGAAGAAAGAAGCCCTGATACAACAAAAGAATCCGT
CTTTTGCTTTCTTAAACAGGATAACATTAGGATATTGGCCACCTAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110744:3..152+

>mRNA_M-pyrifera_M_contig110744.2253.1 ID=mRNA_M-pyrifera_M_contig110744.2253.1|Name=mRNA_M-pyrifera_M_contig110744.2253.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig110744:3..152+ (Macrocystis pyrifera P11B4 male)
GAAGTATTTCCAACGTCATATGAAGCCATTCAAGCCGAGAAGTATATAAA
AGGGAAAAGCAGGAAGAAGAAAGAAGCCCTGATACAACAAAAGAATCCGT
CTTTTGCTTTCTTAAACAGGATAACATTAGGATATTGGCCACCTAAGTGA
GAAGTATTTCCAACGTCATATGAAGCCATTCAAGCCGAGAAGTATATAAA
AGGGAAAAGCAGGAAGAAGAAAGAAGCCCTGATACAACAAAAGAATCCGT
CTTTTGCTTTCTTAAACAGGATAACATTAGGATATTGGCCACCTAAGTGA
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