mRNA_M-pyrifera_M_contig110684.2248.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110684.2248.1
Unique NamemRNA_M-pyrifera_M_contig110684.2248.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110684.2248.1 vs. uniprot
Match: A0A7S3BZ52_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BZ52_9VIRI)

HSP 1 Score: 143 bits (360), Expect = 1.710e-39
Identity = 77/168 (45.83%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    1 LGGVTRLEMKVDSRRHSVELLGQVLPNVRELRLSDSVLESLRDLGTRLRHLRVLWVSRCGLTSLDGMGALENLEELYAAFNDIEDVSALAGHENLRVLDLEANRIRSAGALSLLGTCGELRELELATNPISTLPLFRRFCASRIPQLETLDGRDFDAEDREPLDAAVL 504
            L GV+ LE+ VD+ +  +  +G +LP++REL+L+ S L +LRDLGT+L  LRVLW+ RC +  LDG+GAL  L ELYA+FNDI DV  +A  E L  LDLE NR+  A  L  L  C  LR L L  NP++    +R   A  +PQLE +D       DR P D + +
Sbjct:   11 LQGVSYLELAVDAEQMPINEMGAMLPSLRELKLTGSSLATLRDLGTQLTALRVLWIGRCAVAHLDGLGALPALRELYASFNDIADVGGVAELEELHTLDLEGNRVE-ADQLEWLAACASLRALTLEGNPVAVRQDYRSAVAGTVPQLEYIDDEPVTEADRHPTDKSAV 177          
BLAST of mRNA_M-pyrifera_M_contig110684.2248.1 vs. uniprot
Match: A0A1V9ZB88_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB88_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.710e-38
Identity = 76/165 (46.06%), Postives = 107/165 (64.85%), Query Frame = 1
Query:   10 VTRLEMKVDSRRHSVELLGQVLPNVRELRLSDSVLESLRDLGTRLRHLRVLWVSRCGLTSLDGMGALENLEELYAAFNDIEDVSALAGHENLRVLDLEANRIRSAGALSLLGTCGELRELELATNPISTLPLFRRFCASRIPQLETLDGRDFDAEDREPLDAAVL 504
            VT L++ VD+ + SVE LG++LP++ +LRL +S L S RDLGT L  L+VLW+  CG+T LDG+GAL  L ELY   N I D+S L+ H+ L V+DLE N +     +  LG C +L  L+L  NP++ +P +R   AS IP L +LD +   A DR P+ AA++
Sbjct:   86 VTFLQLTVDTAKQSVEALGELLPSLLQLRLHESHLHSFRDLGTSLHSLQVLWLQSCGVTDLDGIGALTGLRELYLQHNAIADISPLSMHDELAVVDLEGNAVLDIVQIEQLGLCPQLSALKLQGNPVAAIPQYRSIVASYIPHLASLDDKPVTAADRTPVTAAMI 250          
BLAST of mRNA_M-pyrifera_M_contig110684.2248.1 vs. uniprot
Match: A0A5B8MXV2_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MXV2_9CHLO)

HSP 1 Score: 147 bits (371), Expect = 2.150e-38
Identity = 74/162 (45.68%), Postives = 109/162 (67.28%), Query Frame = 1
Query:    4 GGVTRLEMKVDSRRHSVELLGQVLPNVRELRLSDSVLESLRDLGTRLRHLRVLWVSRCGLTSLDGMGALENLEELYAAFNDIEDVSALAGHENLRVLDLEANRIRSAGALSLLGTCGELRELELATNPISTLPLFRRFCASRIPQLETLDGRDFDAEDREPL 489
            G V +LEM+VDS  +++ + G+ LPN++ L+L++S + S+RDLGT  ++L+VLW+SRCGL  L GM AL NL ELY +FND+ D++ LA  EN++V+DLE+NRI    ++  LG C +L +L L  NP+S    +R    S +PQL +LD       DR P+
Sbjct:    6 GEVQQLEMQVDSEEYNLTIAGEKLPNIQRLKLNESKIHSIRDLGTGWKNLKVLWLSRCGLEDLHGMTALPNLTELYVSFNDVCDITPLADLENIQVIDLESNRIEDLDSVGYLGFCRDLVQLTLEGNPVSNEAGYRAKVVSHVPQLLSLDDLPVTERDRAPV 167          
BLAST of mRNA_M-pyrifera_M_contig110684.2248.1 vs. uniprot
Match: T0SCL0_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0SCL0_SAPDV)

HSP 1 Score: 146 bits (369), Expect = 8.230e-38
Identity = 73/165 (44.24%), Postives = 106/165 (64.24%), Query Frame = 1
Query:   10 VTRLEMKVDSRRHSVELLGQVLPNVRELRLSDSVLESLRDLGTRLRHLRVLWVSRCGLTSLDGMGALENLEELYAAFNDIEDVSALAGHENLRVLDLEANRIRSAGALSLLGTCGELRELELATNPISTLPLFRRFCASRIPQLETLDGRDFDAEDREPLDAAVL 504
            VT L++ +D+ + SVE LG++LP++ +LRL +S L S RDLGT L  L+VLW+ RCG+T LDG+GAL  L ELY   N I D+S L+ H+ L V+DL+ N +     +  LG C +L  L+L  NP++++P +R    S IP L  LD +   A DR P+ +A +
Sbjct:   84 VTFLQLSIDTGKQSVEALGELLPSLLQLRLHESKLHSFRDLGTSLHSLQVLWLERCGVTDLDGIGALTGLRELYLNGNCISDISPLSMHDELSVVDLQGNAVMDIVQIEQLGLCPQLTALKLVENPVASIPQYRAIVISYIPHLTALDDKPITAADRTPVTSATI 248          
BLAST of mRNA_M-pyrifera_M_contig110684.2248.1 vs. uniprot
Match: A0A7S0T6A7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T6A7_9CHLO)

HSP 1 Score: 138 bits (348), Expect = 1.820e-37
Identity = 75/157 (47.77%), Postives = 98/157 (62.42%), Query Frame = 1
Query:   19 LEMKVDSRRHSVELLGQVLPNVRELRLSDSVLESLRDLGTRLRHLRVLWVSRCGLTSLDGMGALENLEELYAAFNDIEDVSALAGHENLRVLDLEANRIRSAGALSLLGTCGELRELELATNPISTLPLFRRFCASRIPQLETLDGRDFDAEDREPL 489
            LEM+ D+    +  +G  LP + +LRLS+SVL S R  G+  + LRVLWV+R GL  L G+ +L  L+ELYAAFN++ DVS LA  +NL+V+DLEAN++R   A   LG C  L  L L  NP+S    +RR  A  IP+LE LD R  D  DR  L
Sbjct:   61 LEMRADTTEDDLSGVGAALPALAQLRLSNSVLPSARSFGSTFQRLRVLWVARSGLEDLQGIASLVELKELYAAFNEVSDVSPLAELDNLQVVDLEANQVRDRDAADYLGMCPVLTTLSLEGNPVSNRMYYRRLVARAIPRLEVLDDRPVDDADRAEL 217          
BLAST of mRNA_M-pyrifera_M_contig110684.2248.1 vs. uniprot
Match: A0A1Y1HQI7_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HQI7_KLENI)

HSP 1 Score: 137 bits (346), Expect = 4.550e-35
Identity = 72/161 (44.72%), Postives = 101/161 (62.73%), Query Frame = 1
Query:    1 LGGVTRLEMKVDSRRHSVELLGQVLPNVRELRLSDSVLESLRDLGTRLRHLRVLWVSRCGLTSLDGMGALENLEELYAAFNDIEDVSALAGHENLRVLDLEANRIRSAGALSLLGTCGELRELELATNPISTLPLFRRFCASRIPQLETLDGRDFDAEDRE 483
            L  V+ LE+ V++    +  +GQ++P +REL+L DS L  +RDLGT L  L+VLWV RCGL  +DG+ +L  L ELYAAFNDIED++ +AG ENL +LDLEAN++     ++ LG C +L+ L L  N ++  P +R      IP L  LD       DR+
Sbjct:   29 LSTVSCLELSVNAAEACLFDVGQLVPQLRELKLLDSTLPQIRDLGTGLMQLQVLWVPRCGLQEVDGLSSLPKLRELYAAFNDIEDLAPIAGLENLEILDLEANKVADLDGVAFLGMCPKLQALTLEGNDVAAAPNYRSSVVELIPTLTMLDELPVGPSDRD 189          
BLAST of mRNA_M-pyrifera_M_contig110684.2248.1 vs. uniprot
Match: D8LM99_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM99_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.990e-34
Identity = 76/155 (49.03%), Postives = 100/155 (64.52%), Query Frame = 1
Query:    1 LGGVTRLEMKVDSRRHSVELLGQVLPNVRELRLS-DSVLESLRDLGTRLRHLRVLWVSRCGLTSLDGMGALENLEELYAAFNDIEDVSALAGHENLRVLDLEANRIRSAGALSLLGTCGELRELELATNPISTLPLFRRFCASRIPQLETLDGRD 462
            L  V  L + VD++   V+ LG VLP + ELRL   SVL S RDLG+ L +LRVLW+S CG+  LDG+GAL  LEELY AFND+ED++++A H+ L VLDLE+N ++ A     LGTC  L  L L  NP+     +RR     +PQL +LD +D
Sbjct:   34 LRDVRHLALAVDTKTTQVDHLGTVLPLLTELRLERGSVLASFRDLGSSLPNLRVLWLSACGVCHLDGVGALTGLEELYLAFNDVEDLTSIALHDRLEVLDLESNCLKDAEQAIHLGTCSRLWSLTLTANPLCRDHNYRRRMVEAVPQLASLDEKD 188          
BLAST of mRNA_M-pyrifera_M_contig110684.2248.1 vs. uniprot
Match: F0VZN0_9STRA (Uncharacterized protein AlNc14C2G368 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZN0_9STRA)

HSP 1 Score: 135 bits (341), Expect = 5.930e-34
Identity = 67/152 (44.08%), Postives = 97/152 (63.82%), Query Frame = 1
Query:   25 MKVDSRRHSVELLGQVLPNVRELRLSDSVLESLRDLGTRLRHLRVLWVSRCGLTSLDGMGALENLEELYAAFNDIEDVSALAGHENLRVLDLEANRIRSAGALSLLGTCGELRELELATNPISTLPLFRRFCASRIPQLETLDGRDFDAEDR 480
            + +DSR+ S EL+GQ+LP+++ L+  +S + S RDLGT LR L++L    CG+  LDG+ AL NLEELY ++NDI ++     H+ LRVLDLE N+I     +  L  C  LR++ L  NP++ LP +R+   + IPQ+E LDG      DR
Sbjct:  135 ISIDSRKQSTELIGQLLPSLKRLQFCNSFIASFRDLGTSLRVLKILDARECGIKHLDGISALANLEELYLSYNDITEIDYCFKHDELRVLDLEGNKIADENQVQHLAFCTHLRDVHLRKNPMTKLPHYRQLVVTMIPQVEILDGARVTEADR 286          
BLAST of mRNA_M-pyrifera_M_contig110684.2248.1 vs. uniprot
Match: A0A6H5JTQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ1_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 7.570e-34
Identity = 76/155 (49.03%), Postives = 99/155 (63.87%), Query Frame = 1
Query:    1 LGGVTRLEMKVDSRRHSVELLGQVLPNVRELRLS-DSVLESLRDLGTRLRHLRVLWVSRCGLTSLDGMGALENLEELYAAFNDIEDVSALAGHENLRVLDLEANRIRSAGALSLLGTCGELRELELATNPISTLPLFRRFCASRIPQLETLDGRD 462
            L  V  L + VD+    V+ LG VLP + ELRL   SVL S RDLG+ L +LRVLW+S CG+  LDG+GAL  LEELY AFND+ED++++A H+ L VLDLE+N ++ A     LGTC  L  L L  NP+     +RR     +PQL +LD +D
Sbjct:   34 LRDVRHLALAVDTNTTQVDHLGIVLPLLSELRLERGSVLASFRDLGSSLPNLRVLWLSACGVRHLDGVGALTGLEELYLAFNDVEDLTSIALHDRLEVLDLESNCVKDAEQAIHLGTCSHLWSLTLTANPVCRDLHYRRRMVEAVPQLASLDEKD 188          
BLAST of mRNA_M-pyrifera_M_contig110684.2248.1 vs. uniprot
Match: A0A485KIX1_9STRA (Aste57867_7880 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIX1_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.090e-33
Identity = 72/166 (43.37%), Postives = 99/166 (59.64%), Query Frame = 1
Query:    1 LGGVTRLEMKVDSRRHSVELLGQVLPNVRELRLSDSVLESLRDLGTRLRHLRVLWVSRCGLTSLDGMGALENLEELYAAFNDIEDVSALAGHENLRVLDLEANRIRSAGALSLLGT-------------CGELRELELATNPISTLPLFRRFCASRIPQLETLDGR 459
            L  V  L++ VD+++ SVE LG++LP++ +LRL  S+L S RDLGT L  L+VLW+ R G+  LDG+GAL  L ELY  FN+I D+S L+ H+ L V+DL+ N +     L  LG              C  L  L LA NP++++P +R    S IP LE LD R
Sbjct:   75 LNKVNYLQLTVDTQKQSVEALGELLPSMTQLRLHQSILHSFRDLGTSLHGLQVLWLMRSGVKDLDGIGALTGLRELYLQFNEIADISPLSMHDELHVIDLQGNCVEDIVQLEQLGRSIQVLSTNYHSGLCPHLASLNLADNPVASIPQYRPIVCSYIPHLEKLDER 240          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110684.2248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3BZ52_9VIRI1.710e-3945.83Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A1V9ZB88_9STRA1.710e-3846.06Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A5B8MXV2_9CHLO2.150e-3845.68Uncharacterized protein n=1 Tax=Chloropicon primus... [more]
T0SCL0_SAPDV8.230e-3844.24Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S0T6A7_9CHLO1.820e-3747.77Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A1Y1HQI7_KLENI4.550e-3544.72Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
D8LM99_ECTSI2.990e-3449.03Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
F0VZN0_9STRA5.930e-3444.08Uncharacterized protein AlNc14C2G368 n=1 Tax=Albug... [more]
A0A6H5JTQ1_9PHAE7.570e-3449.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485KIX1_9STRA5.090e-3343.37Aste57867_7880 protein n=1 Tax=Aphanomyces stellat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110684contigM-pyrifera_M_contig110684:34..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue1.2e-32
Seed eggNOG ortholog112098.XP_008606261.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size504
Cds size480
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.9715948-UTR-M-pyrifera_M_contig110684:33..571622815618.9715948-UTR-M-pyrifera_M_contig110684:33..57Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110684 34..57 +
1692277490.3415902-UTR-M-pyrifera_M_contig110684:33..571692277490.3415902-UTR-M-pyrifera_M_contig110684:33..57Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110684 34..57 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.9913445-CDS-M-pyrifera_M_contig110684:57..5371622815618.9913445-CDS-M-pyrifera_M_contig110684:57..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110684 58..537 +
1692277490.36302-CDS-M-pyrifera_M_contig110684:57..5371692277490.36302-CDS-M-pyrifera_M_contig110684:57..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110684 58..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110684.2248.1prot_M-pyrifera_M_contig110684.2248.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110684 58..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110684.2248.1

>prot_M-pyrifera_M_contig110684.2248.1 ID=prot_M-pyrifera_M_contig110684.2248.1|Name=mRNA_M-pyrifera_M_contig110684.2248.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
MKVDSRRHSVELLGQVLPNVRELRLSDSVLESLRDLGTRLRHLRVLWVSR
CGLTSLDGMGALENLEELYAAFNDIEDVSALAGHENLRVLDLEANRIRSA
GALSLLGTCGELRELELATNPISTLPLFRRFCASRIPQLETLDGRDFDAE
DREPLDAAVL
back to top

mRNA from alignment at M-pyrifera_M_contig110684:34..537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110684.2248.1 ID=mRNA_M-pyrifera_M_contig110684.2248.1|Name=mRNA_M-pyrifera_M_contig110684.2248.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig110684:34..537+ (Macrocystis pyrifera P11B4 male)
CTGGGAGGAGTGACACGGTTAGAAATGAAAGTGGATAGTCGTAGACATAG CGTGGAGTTGCTCGGACAGGTCCTTCCCAACGTTCGTGAGCTCCGTTTGT CGGACAGCGTCCTCGAATCGTTGCGTGACTTGGGTACTCGGTTACGTCAT CTTCGTGTCTTGTGGGTATCTCGATGTGGCCTCACGAGTTTGGATGGAAT GGGTGCGTTGGAGAACCTGGAAGAGTTGTATGCTGCTTTCAATGACATTG AGGATGTTTCTGCACTAGCAGGACATGAAAATCTACGTGTATTAGACTTA GAAGCCAATCGCATCCGTTCAGCAGGTGCATTGTCACTCCTAGGTACATG TGGAGAGCTACGAGAATTAGAGCTTGCTACCAACCCCATCTCTACGCTTC CTCTCTTTCGCCGGTTTTGTGCATCAAGAATTCCACAACTGGAAACCTTG GATGGCCGTGATTTTGACGCAGAGGACAGAGAACCGCTCGATGCTGCAGT GTTA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110684:34..537+

>mRNA_M-pyrifera_M_contig110684.2248.1 ID=mRNA_M-pyrifera_M_contig110684.2248.1|Name=mRNA_M-pyrifera_M_contig110684.2248.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig110684:34..537+ (Macrocystis pyrifera P11B4 male)
ATGAAAGTGGATAGTCGTAGACATAGCGTGGAGTTGCTCGGACAGGTCCT
TCCCAACGTTCGTGAGCTCCGTTTGTCGGACAGCGTCCTCGAATCGTTGC
GTGACTTGGGTACTCGGTTACGTCATCTTCGTGTCTTGTGGGTATCTCGA
TGTGGCCTCACGAGTTTGGATGGAATGGGTGCGTTGGAGAACCTGGAAGA
GTTGTATGCTGCTTTCAATGACATTGAGGATGTTTCTGCACTAGCAGGAC
ATGAAAATCTACGTGTATTAGACTTAGAAGCCAATCGCATCCGTTCAGCA
GGTGCATTGTCACTCCTAGGTACATGTGGAGAGCTACGAGAATTAGAGCT
TGCTACCAACCCCATCTCTACGCTTCCTCTCTTTCGCCGGTTTTGTGCAT
CAAGAATTCCACAACTGGAAACCTTGGATGGCCGTGATTTTGACGCAGAG
GACAGAGAACCGCTCGATGCTGCAGTGTTAATGAAAGTGGATAGTCGTAG
ACATAGCGTGGAGTTGCTCGGACAGGTCCTTCCCAACGTTCGTGAGCTCC
GTTTGTCGGACAGCGTCCTCGAATCGTTGCGTGACTTGGGTACTCGGTTA
CGTCATCTTCGTGTCTTGTGGGTATCTCGATGTGGCCTCACGAGTTTGGA
TGGAATGGGTGCGTTGGAGAACCTGGAAGAGTTGTATGCTGCTTTCAATG
ACATTGAGGATGTTTCTGCACTAGCAGGACATGAAAATCTACGTGTATTA
GACTTAGAAGCCAATCGCATCCGTTCAGCAGGTGCATTGTCACTCCTAGG
TACATGTGGAGAGCTACGAGAATTAGAGCTTGCTACCAACCCCATCTCTA
CGCTTCCTCTCTTTCGCCGGTTTTGTGCATCAAGAATTCCACAACTGGAA
ACCTTGGATGGCCGTGATTTTGACGCAGAGGACAGAGAACCGCTCGATGC
TGCAGTGTTA
back to top