mRNA_M-pyrifera_M_contig97585.22478.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97585.22478.1
Unique NamemRNA_M-pyrifera_M_contig97585.22478.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97585.22478.1 vs. uniprot
Match: A0A4D9D6Q4_9STRA (Nuclear transcription factor Y subunit n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6Q4_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.080e-7
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    1 QPWLHQSRHLHAKKRARGPGGKFLSAEEKEAYDKNQAMME 120
            +P+LH+SRHLHA KR RGPGG+FL+ EE+ A+D+ QA +E
Sbjct:  169 KPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLE 208          
BLAST of mRNA_M-pyrifera_M_contig97585.22478.1 vs. uniprot
Match: W7TNQ8_9STRA (Nuclear transcription factor Y subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNQ8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.370e-7
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    1 QPWLHQSRHLHAKKRARGPGGKFLSAEEKEAYDKNQAMME 120
            +P+LH+SRHLHA KR RGPGG+FL+ EE+ A+D+ QA +E
Sbjct:  169 KPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLE 208          
BLAST of mRNA_M-pyrifera_M_contig97585.22478.1 vs. uniprot
Match: A0A6A7BWU2_9PEZI (Transcriptional activator HAP2 (Fragment) n=1 Tax=Piedraia hortae CBS 480.64 TaxID=1314780 RepID=A0A6A7BWU2_9PEZI)

HSP 1 Score: 50.8 bits (120), Expect = 1.390e-6
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1
Query:    1 QPWLHQSRHLHAKKRARGPGGKFLSAEEKEAYDKNQA 111
            +P+LH+SRH HA +R RGPGG+FL+AEE  A DK Q+
Sbjct:   39 KPYLHESRHKHAMRRPRGPGGRFLTAEEVAAMDKGQS 75          
BLAST of mRNA_M-pyrifera_M_contig97585.22478.1 vs. uniprot
Match: J0DBJ2_AURST (Transcriptional activator HAP2 (Fragment) n=1 Tax=Auricularia subglabra (strain TFB-10046 / SS5) TaxID=717982 RepID=J0DBJ2_AURST)

HSP 1 Score: 49.7 bits (117), Expect = 3.520e-6
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    1 QPWLHQSRHLHAKKRARGPGGKFLSAEEKEAYDKNQ 108
            +P+LH+SRH HA +R RGPGG+FL+AEE+ A +++Q
Sbjct:   37 KPYLHESRHKHAMRRPRGPGGRFLTAEERAALERSQ 72          
BLAST of mRNA_M-pyrifera_M_contig97585.22478.1 vs. uniprot
Match: L2FBE6_COLFN (Transcriptional activator HAP2 n=8 Tax=Colletotrichum TaxID=5455 RepID=L2FBE6_COLFN)

HSP 1 Score: 52.4 bits (124), Expect = 4.880e-6
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 QPWLHQSRHLHAKKRARGPGGKFLSAEEKEAYDKNQAMMEQAKRDFQEASVGTPEKSVED 180
            +P+LH+SRH HA +R RGPGG+FL+AEE  A ++++A    A +D      G+  KS  D
Sbjct:  219 KPYLHESRHNHAMRRPRGPGGRFLTAEEVAAIERDKASGTDAPKDDSSPKAGSKRKSEAD 278          
BLAST of mRNA_M-pyrifera_M_contig97585.22478.1 vs. uniprot
Match: A0A168L0A1_ABSGL (Transcriptional activator HAP2 n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168L0A1_ABSGL)

HSP 1 Score: 51.2 bits (121), Expect = 7.620e-6
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 QPWLHQSRHLHAKKRARGPGGKFLSAEEKEAYDKNQAM-MEQAKRDFQEASVGTPEK-SVEDVVGEHPAEKDSNGN-LTNLSA 240
            +P+LH+SRH HA +R RGPGG+FL+A E    +KN  + M+  + D +  +  +P   S      + P+ K+++GN + NL +
Sbjct:  116 KPYLHESRHRHAMRRPRGPGGRFLTASEIAEMEKNGKLPMDDERHDMRNEATASPSNTSTTSEDQQQPSNKENHGNHMVNLQS 198          
BLAST of mRNA_M-pyrifera_M_contig97585.22478.1 vs. uniprot
Match: M1AUU4_SOLTU (Nuclear transcription factor Y subunit n=2 Tax=Solanum TaxID=4107 RepID=M1AUU4_SOLTU)

HSP 1 Score: 48.5 bits (114), Expect = 8.720e-6
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 QPWLHQSRHLHAKKRARGPGGKFLSAEEK-EAYDKNQA 111
            QP+LH+SRHLHA +RARG GG+F++A+EK E+ DK++A
Sbjct:   11 QPYLHESRHLHALRRARGCGGRFMTAKEKDESDDKSKA 48          
BLAST of mRNA_M-pyrifera_M_contig97585.22478.1 vs. uniprot
Match: V5G5H3_BYSSN (Transcriptional activator HAP2 n=2 Tax=Byssochlamys spectabilis TaxID=264951 RepID=V5G5H3_BYSSN)

HSP 1 Score: 51.6 bits (122), Expect = 9.620e-6
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    1 QPWLHQSRHLHAKKRARGPGGKFLSAEEKEAYDKNQAMMEQAKRDFQEASVGTPEKSVEDVVG 189
            +P+LH+SRH HA +R RGPGG+FL+A+E  A +KNQA     +         T +K   D +G
Sbjct:  262 KPYLHESRHNHAMRRPRGPGGRFLTADEVAAMEKNQAANPGKENANSSNDHSTAQKRKSDAIG 324          
BLAST of mRNA_M-pyrifera_M_contig97585.22478.1 vs. uniprot
Match: A0A165FCT8_9BASI (Transcriptional activator HAP2 (Fragment) n=1 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165FCT8_9BASI)

HSP 1 Score: 48.5 bits (114), Expect = 1.120e-5
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 QPWLHQSRHLHAKKRARGPGGKFLSAEEKEAYDK 102
            +P+LH+SRH HA +R RGPGG+FL+AEE +A +K
Sbjct:   39 KPYLHESRHRHAMRRPRGPGGRFLTAEEVQAMEK 72          
BLAST of mRNA_M-pyrifera_M_contig97585.22478.1 vs. uniprot
Match: A0A1L9SG54_9EURO (Transcriptional activator HAP2 n=1 Tax=Penicilliopsis zonata CBS 506.65 TaxID=1073090 RepID=A0A1L9SG54_9EURO)

HSP 1 Score: 51.2 bits (121), Expect = 1.320e-5
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 QPWLHQSRHLHAKKRARGPGGKFLSAEEKEAYDKNQA 111
            +P+LH+SRH HA +R RGPGG+FL+A+E  A +KNQA
Sbjct:  257 KPYLHESRHNHAMRRPRGPGGRFLTADEVAAMEKNQA 293          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97585.22478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9D6Q4_9STRA5.080e-762.50Nuclear transcription factor Y subunit n=1 Tax=Nan... [more]
W7TNQ8_9STRA5.370e-762.50Nuclear transcription factor Y subunit n=1 Tax=Nan... [more]
A0A6A7BWU2_9PEZI1.390e-662.16Transcriptional activator HAP2 (Fragment) n=1 Tax=... [more]
J0DBJ2_AURST3.520e-658.33Transcriptional activator HAP2 (Fragment) n=1 Tax=... [more]
L2FBE6_COLFN4.880e-645.00Transcriptional activator HAP2 n=8 Tax=Colletotric... [more]
A0A168L0A1_ABSGL7.620e-636.14Transcriptional activator HAP2 n=1 Tax=Absidia gla... [more]
M1AUU4_SOLTU8.720e-663.16Nuclear transcription factor Y subunit n=2 Tax=Sol... [more]
V5G5H3_BYSSN9.620e-642.86Transcriptional activator HAP2 n=2 Tax=Byssochlamy... [more]
A0A165FCT8_9BASI1.120e-561.76Transcriptional activator HAP2 (Fragment) n=1 Tax=... [more]
A0A1L9SG54_9EURO1.320e-562.16Transcriptional activator HAP2 n=1 Tax=Penicilliop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97585contigM-pyrifera_M_contig97585:176..415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.9739182-CDS-M-pyrifera_M_contig97585:175..4151622816892.9739182-CDS-M-pyrifera_M_contig97585:175..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97585 176..415 +
1692278240.4934552-CDS-M-pyrifera_M_contig97585:175..4151692278240.4934552-CDS-M-pyrifera_M_contig97585:175..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97585 176..415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97585.22478.1prot_M-pyrifera_M_contig97585.22478.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97585 176..415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97585.22478.1

>prot_M-pyrifera_M_contig97585.22478.1 ID=prot_M-pyrifera_M_contig97585.22478.1|Name=mRNA_M-pyrifera_M_contig97585.22478.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
QPWLHQSRHLHAKKRARGPGGKFLSAEEKEAYDKNQAMMEQAKRDFQEAS
VGTPEKSVEDVVGEHPAEKDSNGNLTNLSA
back to top

mRNA from alignment at M-pyrifera_M_contig97585:176..415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97585.22478.1 ID=mRNA_M-pyrifera_M_contig97585.22478.1|Name=mRNA_M-pyrifera_M_contig97585.22478.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig97585:176..415+ (Macrocystis pyrifera P11B4 male)
CAGCCATGGCTGCACCAATCCCGCCACTTGCACGCGAAGAAGAGGGCGCG AGGCCCGGGCGGCAAGTTCCTTTCTGCTGAAGAGAAGGAGGCATACGACA AGAACCAGGCCATGATGGAGCAGGCGAAGAGAGACTTCCAAGAAGCGTCT GTGGGCACGCCCGAGAAGAGCGTGGAAGACGTGGTGGGCGAGCACCCTGC GGAGAAGGACAGCAACGGAAACCTCACCAACCTCTCGGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig97585:176..415+

>mRNA_M-pyrifera_M_contig97585.22478.1 ID=mRNA_M-pyrifera_M_contig97585.22478.1|Name=mRNA_M-pyrifera_M_contig97585.22478.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig97585:176..415+ (Macrocystis pyrifera P11B4 male)
CAGCCATGGCTGCACCAATCCCGCCACTTGCACGCGAAGAAGAGGGCGCG
AGGCCCGGGCGGCAAGTTCCTTTCTGCTGAAGAGAAGGAGGCATACGACA
AGAACCAGGCCATGATGGAGCAGGCGAAGAGAGACTTCCAAGAAGCGTCT
GTGGGCACGCCCGAGAAGAGCGTGGAAGACGTGGTGGGCGAGCACCCTGC
GGAGAAGGACAGCAACGGAAACCTCACCAACCTCTCGGCCCAGCCATGGC
TGCACCAATCCCGCCACTTGCACGCGAAGAAGAGGGCGCGAGGCCCGGGC
GGCAAGTTCCTTTCTGCTGAAGAGAAGGAGGCATACGACAAGAACCAGGC
CATGATGGAGCAGGCGAAGAGAGACTTCCAAGAAGCGTCTGTGGGCACGC
CCGAGAAGAGCGTGGAAGACGTGGTGGGCGAGCACCCTGCGGAGAAGGAC
AGCAACGGAAACCTCACCAACCTCTCGGCC
back to top