mRNA_M-pyrifera_M_contig97580.22477.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig97580.22477.1 vs. uniprot
Match: A0A7Y2IQ80_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2IQ80_9ACTN) HSP 1 Score: 60.5 bits (145), Expect = 1.220e-9 Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 1 DSTLVERDDISGTAVFLVPFVGMPPLWVDDGDWWKLAVLAAVLSAAGYTSR 153
DS +V + ++G VFLVPF+G+P +W D+G+W +L L + GYTSR
Sbjct: 156 DSGIVAPESVNGIGVFLVPFIGLPRIWFDNGEWLRLGALVTLFVVVGYTSR 206
BLAST of mRNA_M-pyrifera_M_contig97580.22477.1 vs. uniprot
Match: UPI000F9A981F (signal peptidase I n=1 Tax=Curtobacterium sp. PhB130 TaxID=2485178 RepID=UPI000F9A981F) HSP 1 Score: 52.4 bits (124), Expect = 1.550e-6 Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 1
Query: 1 DSTLVERDDISGTAVFLVPFVGMPPLWVDDGDWWKLAVLAAVLSAAGY 144
DST +ER + G A +PFVG P +W+ DG+W K+ +LA L+A Y
Sbjct: 128 DSTPIERSAVHGVAFLRIPFVGTPIVWLRDGEWHKVVLLALALTAMLY 175
BLAST of mRNA_M-pyrifera_M_contig97580.22477.1 vs. uniprot
Match: UPI00188A9BB5 (signal peptidase I n=1 Tax=Curtobacterium sp. VKM Ac-1393 TaxID=2783814 RepID=UPI00188A9BB5) HSP 1 Score: 52.4 bits (124), Expect = 1.690e-6 Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1
Query: 1 DSTLVERDDISGTAVFLVPFVGMPPLWVDDGDWWKLAVLAAVLSA 135
DST +ER D+ G A +PFVG P LW+ G+W K+ VLA L+A
Sbjct: 125 DSTPLERSDVHGVAFLRIPFVGAPVLWLRQGEWAKVLVLALGLTA 169
BLAST of mRNA_M-pyrifera_M_contig97580.22477.1 vs. uniprot
Match: A0A2W1Z8E7_9MICO (Signal peptidase I n=7 Tax=Curtobacterium TaxID=2034 RepID=A0A2W1Z8E7_9MICO) HSP 1 Score: 52.0 bits (123), Expect = 2.320e-6 Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query: 1 DSTLVERDDISGTAVFLVPFVGMPPLWVDDGDWWKLAVLAAVLSAAGYTS 150
DST + R + G VP++GMP +W+ DG+W K+A+L L+A + S
Sbjct: 131 DSTPITRSAVHGVGFIRVPYIGMPVMWLRDGEWKKVAILVLALTAMAFLS 180
BLAST of mRNA_M-pyrifera_M_contig97580.22477.1 vs. uniprot
Match: A0A3N1JAH3_9MICO (Signal peptidase n=2 Tax=unclassified Curtobacterium TaxID=257496 RepID=A0A3N1JAH3_9MICO) HSP 1 Score: 51.2 bits (121), Expect = 4.320e-6 Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1
Query: 1 DSTLVERDDISGTAVFLVPFVGMPPLWVDDGDWWKLAVLAAVLSAAGY 144
DST +ER + G A +P+VG P +W+ DG+W K+ +LA L+A Y
Sbjct: 128 DSTPIERSAVHGVAFLRIPYVGTPIVWLRDGEWHKVVLLALALTAMLY 175
BLAST of mRNA_M-pyrifera_M_contig97580.22477.1 vs. uniprot
Match: UPI001C4E9A05 (Ig-like domain-containing protein n=2 Tax=unclassified Arthrobacter TaxID=235627 RepID=UPI001C4E9A05) HSP 1 Score: 51.2 bits (121), Expect = 4.370e-6 Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 1 DSTLVERDDISGTAVFLVPFVGMPPLWVDDGDW-----WKLAVLAAVLSAA-GYTSRR 156
DST + R+ ISG A L+P+VG+P LW+ GD+ W L L AV +A G T+RR
Sbjct: 69 DSTPITREQISGQARLLIPWVGLPGLWLASGDFPSLALWSLLTLTAVAAAVLGVTNRR 126
BLAST of mRNA_M-pyrifera_M_contig97580.22477.1 vs. uniprot
Match: UPI00188AE1A5 (S26 family signal peptidase n=1 Tax=Curtobacterium sp. VKM Ac-1395 TaxID=2783815 RepID=UPI00188AE1A5) HSP 1 Score: 50.4 bits (119), Expect = 8.110e-6 Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 1
Query: 1 DSTLVERDDISGTAVFLVPFVGMPPLWVDDGDWWKLAVLAAVLSA 135
DST + R D+ G A +P VG P +W+ DG W KLA+LA ++A
Sbjct: 125 DSTAISRSDVHGVAFLRIPVVGTPIVWMRDGAWSKLALLALAVAA 169
BLAST of mRNA_M-pyrifera_M_contig97580.22477.1 vs. uniprot
Match: A0A2W1U2U8_9MICO (Ig-like domain-containing protein n=21 Tax=Curtobacterium TaxID=2034 RepID=A0A2W1U2U8_9MICO) HSP 1 Score: 49.7 bits (117), Expect = 1.520e-5 Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1
Query: 1 DSTLVERDDISGTAVFLVPFVGMPPLWVDDGDWWKLAVLAAVLSA 135
DST +ER + G A +PFVG P LW+ G+W K+ VLA L+A
Sbjct: 125 DSTPLERSAVRGVAFLRIPFVGSPVLWLRQGEWVKVVVLALGLTA 169
BLAST of mRNA_M-pyrifera_M_contig97580.22477.1 vs. uniprot
Match: A0A2S3ZR14_ARTGL (Signal peptidase I n=3 Tax=Arthrobacter glacialis TaxID=1664 RepID=A0A2S3ZR14_ARTGL) HSP 1 Score: 47.8 bits (112), Expect = 7.360e-5 Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query: 1 DSTLVERDDISGTAVFLVPFVGMPPLWVDDGD-----WWKLAVLAAVLSA 135
DST ++R+ I+G A LVPFVG+P LW+ G+ WW + L AV+ A
Sbjct: 133 DSTPLKREQITGQARLLVPFVGLPGLWLGLGNLPALAWWSVLTLIAVVLA 182 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97580.22477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig97580.22477.1 >prot_M-pyrifera_M_contig97580.22477.1 ID=prot_M-pyrifera_M_contig97580.22477.1|Name=mRNA_M-pyrifera_M_contig97580.22477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp DSTLVERDDISGTAVFLVPFVGMPPLWVDDGDWWKLAVLAAVLSAAGYTSback to top mRNA from alignment at M-pyrifera_M_contig97580:1..156+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig97580.22477.1 ID=mRNA_M-pyrifera_M_contig97580.22477.1|Name=mRNA_M-pyrifera_M_contig97580.22477.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig97580:1..156+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig97580:1..156+ >mRNA_M-pyrifera_M_contig97580.22477.1 ID=mRNA_M-pyrifera_M_contig97580.22477.1|Name=mRNA_M-pyrifera_M_contig97580.22477.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig97580:1..156+ (Macrocystis pyrifera P11B4 male)back to top |