mRNA_M-pyrifera_M_contig9758.22476.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9758.22476.1
Unique NamemRNA_M-pyrifera_M_contig9758.22476.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9758.22476.1 vs. uniprot
Match: A0A6H5KJ68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ68_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 8.710e-51
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 1 
Query:    1 RYLLQQWSSDPEKLKYLSLWLRCVIERRKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGGLPVLVHSRRSPPEDNASQGSGTLALDNNDDDHDDDGRTLWDLRVKVTLHG 342
            RYLLQQWS+DP+K+KYLSLWLRCVIERRKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGG+PVLVHSRRSPPE++A  G+GT A     D H  +   LWDLRVKV L+G
Sbjct:  980 RYLLQQWSTDPDKIKYLSLWLRCVIERRKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGGIPVLVHSRRSPPEESAPAGAGTPAYP---DGHSKE-TALWDLRVKVDLNG 1089
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BLAST of mRNA_M-pyrifera_M_contig9758.22476.1 vs. uniprot
Match: D8LFB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB2_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 3.480e-50
Identity = 89/114 (78.07%), Postives = 98/114 (85.96%), Query Frame = 1 
Query:    1 RYLLQQWSSDPEKLKYLSLWLRCVIERRKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGGLPVLVHSRRSPPEDNASQGSGTLALDNNDDDHDDDGRTLWDLRVKVTLHG 342
            RYLLQQWS+DP+KLKYLSLWLRCVIERRKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGG+PVLVHSRRSPPE++   G+GT     + D H  +   LWDLRVKV L+G
Sbjct:  742 RYLLQQWSTDPDKLKYLSLWLRCVIERRKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGGIPVLVHSRRSPPEESIPAGAGTPT---SPDSHSKE-TALWDLRVKVDLNG 851
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BLAST of mRNA_M-pyrifera_M_contig9758.22476.1 vs. uniprot
Match: A0A7S2DMV1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DMV1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.920e-18
Identity = 34/64 (53.12%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 RYLLQQWSSDPEKLKYLSLWLRCVIERRKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGG 192
            ++LL  W+SDP+KL+Y+SLWL  +   +++ + FP+GLQLV L PEIKDGFLTL++P++R + G
Sbjct:   52 QHLLTNWTSDPQKLRYVSLWLTVLAGTKEIAETFPAGLQLVSLRPEIKDGFLTLIVPILRKSRG 115
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BLAST of mRNA_M-pyrifera_M_contig9758.22476.1 vs. uniprot
Match: A0A7S2DLI1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLI1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.950e-18
Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 RYLLQQWSSDPEKLKYLSLWLRCVIERRKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGGLPVLVHSR 216
            ++LL  W+SDP+KL+Y+SLWL  +   +++ + FP+GLQLV L PEIKDGFLTL++P++R + G  V V  R
Sbjct:   52 QHLLTNWTSDPQKLRYVSLWLTVLAGTKEIAETFPAGLQLVSLRPEIKDGFLTLIVPILRKSRGSRVSVKVR 123
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BLAST of mRNA_M-pyrifera_M_contig9758.22476.1 vs. uniprot
Match: A0A7S2SI89_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SI89_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.780e-17
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 RYLLQQWSSDPEKLKYLSLWLRCVIER---RKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIR 180
            ++LL  W+SDP+KL+Y+SLWL  +I       VP++FPSGLQL+GL PEIKDGFLTL++PM++
Sbjct:  223 QHLLASWTSDPQKLRYVSLWLSVLINEDPATPVPESFPSGLQLIGLKPEIKDGFLTLIVPMLK 285
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BLAST of mRNA_M-pyrifera_M_contig9758.22476.1 vs. uniprot
Match: A0A7S2SIB0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIB0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.340e-17
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 RYLLQQWSSDPEKLKYLSLWLRCVIER---RKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIR 180
            ++LL  W+SDP+KL+Y+SLWL  +I       VP++FPSGLQL+GL PEIKDGFLTL++PM++
Sbjct:  675 QHLLASWTSDPQKLRYVSLWLSVLINEDPATPVPESFPSGLQLIGLKPEIKDGFLTLIVPMLK 737
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BLAST of mRNA_M-pyrifera_M_contig9758.22476.1 vs. uniprot
Match: A0A8K1C2V5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2V5_PYTOL)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-13
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 RYLLQQWSSDPEKLKYLSLWL-RCVIERRKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGGLPVLVHSRR 219
            +YLLQ W+ + +KL+Y+  WL   V+E   +PD FP G++L  L PEI+DGFLTLV+P++R      + VH+R+
Sbjct:  291 QYLLQSWTQNIKKLQYIRTWLTHVVVETADLPDDFPMGIELPRLLPEIRDGFLTLVVPLLRKQTRREIQVHTRQ 364
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BLAST of mRNA_M-pyrifera_M_contig9758.22476.1 vs. uniprot
Match: A0A662Y4D6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4D6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.110e-12
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    4 YLLQQWSSDPEKLKYLSLWL-RCVIERRKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGGLPVLVHSRR 219
            YLL  W+++ +K++YL  WL + V+ R  +P  FP G++L  L PE++DGFLTLV+P++R      +L HSRR
Sbjct:  319 YLLHAWTANVKKMQYLRRWLTQVVVTRGPLPADFPMGVELPRLPPEVRDGFLTLVVPLLRRQTEREILAHSRR 391
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BLAST of mRNA_M-pyrifera_M_contig9758.22476.1 vs. uniprot
Match: A0A225W8L9_9STRA (RxLR effector protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W8L9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.840e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    4 YLLQQWSSDPEKLKYLSLWL-RCVIERRKVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGGLPVLVHSRR 219
            Y+L+ W+ + +K++YL  WL + V  +  +PD FP G++L  L PE++DGFLTLV+P++R      +L HSRR
Sbjct:  276 YILRAWTKNIKKMRYLRRWLIQVVTTKGPLPDDFPMGVELPRLPPEVRDGFLTLVLPLLRKQTEREILAHSRR 348
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BLAST of mRNA_M-pyrifera_M_contig9758.22476.1 vs. uniprot
Match: A0A484ECE1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECE1_BRELC)

HSP 1 Score: 71.6 bits (174), Expect = 2.390e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    4 YLLQQWSSDPEKLKYLSLWLRCVIERR-KVPDAFPSGLQLVGLAPEIKDGFLTLVIPMIRFTGGLPVLVHSRR 219
            YLL+ W+ D +K +YL  WL  V++ +  +PDAFP  ++L  L+PE++DGFLTLV+P++R      +L H R+
Sbjct:  262 YLLRAWTIDMKKWRYLRRWLLQVVQTKGPLPDAFPMAVELPRLSPEVRDGFLTLVLPLLRKQTERDILAHCRK 334
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9758.22476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ68_9PHAE8.710e-5178.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFB2_ECTSI3.480e-5078.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2DMV1_9STRA1.920e-1853.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2DLI1_9STRA1.950e-1851.39Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SI89_9STRA2.780e-1758.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SIB0_9STRA3.340e-1758.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K1C2V5_PYTOL1.120e-1345.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662Y4D6_9STRA1.110e-1245.21Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A225W8L9_9STRA1.840e-1243.84RxLR effector protein n=1 Tax=Phytophthora megakar... [more]
A0A484ECE1_BRELC2.390e-1243.84Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9758contigM-pyrifera_M_contig9758:133..2599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue2.3e-43
Seed eggNOG ortholog2880.D8LFB2
Hectar predicted targeting categoryother localisation
EggNOG OGs28PZD@1,2RY8W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size342
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9758.22476.1prot_M-pyrifera_M_contig9758.22476.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9758 133..2599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.8813322-CDS-M-pyrifera_M_contig9758:132..2191622816892.8813322-CDS-M-pyrifera_M_contig9758:132..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9758 133..219 +
1692278240.437313-CDS-M-pyrifera_M_contig9758:132..2191692278240.437313-CDS-M-pyrifera_M_contig9758:132..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9758 133..219 +
1622816892.8931608-CDS-M-pyrifera_M_contig9758:1236..12931622816892.8931608-CDS-M-pyrifera_M_contig9758:1236..1293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9758 1237..1293 +
1692278240.450582-CDS-M-pyrifera_M_contig9758:1236..12931692278240.450582-CDS-M-pyrifera_M_contig9758:1236..1293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9758 1237..1293 +
1622816892.9046407-CDS-M-pyrifera_M_contig9758:2401..25991622816892.9046407-CDS-M-pyrifera_M_contig9758:2401..2599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9758 2402..2599 +
1692278240.4610488-CDS-M-pyrifera_M_contig9758:2401..25991692278240.4610488-CDS-M-pyrifera_M_contig9758:2401..2599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9758 2402..2599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9758.22476.1

>prot_M-pyrifera_M_contig9758.22476.1 ID=prot_M-pyrifera_M_contig9758.22476.1|Name=mRNA_M-pyrifera_M_contig9758.22476.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
RYLLQQWSSDPEKLKYLSLWLRCVIERRKVPDAFPSGLQLVGLAPEIKDG
FLTLVIPMIRFTGGLPVLVHSRRSPPEDNASQGSGTLALDNNDDDHDDDG
RTLWDLRVKVTLHG
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mRNA from alignment at M-pyrifera_M_contig9758:133..2599+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9758.22476.1 ID=mRNA_M-pyrifera_M_contig9758.22476.1|Name=mRNA_M-pyrifera_M_contig9758.22476.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2467bp|location=Sequence derived from alignment at M-pyrifera_M_contig9758:133..2599+ (Macrocystis pyrifera P11B4 male)
AGGTACCTGTTGCAGCAGTGGTCGTCCGACCCTGAGAAACTGAAGTACCT
CTCCCTCTGGCTCCGTTGTGTCATCGAGCGTCGAAAGGTGAGCGTCCCTA
TTTTTAGACGCGGTGCAATTTGGTGATTGGCCTGCGTAGTTCCGCCGCTG
GAACCGCGTTCCCCACGCTGTGGCCGGCGGCGCCCCGTCATAAAACACTG
CCCTCTTGCTCTCTGTGGAAGGCACCGCTTCGTTTGGGGGGTTTGTGCGG
GGTTTGGTTGGCCTTGCGGTGGGAGCTGCGTCCATAGTTACGTTTTTGTG
TTTGTGTTTTTAAAACGGCTACCAGGTATACGATACATGCCGGGTATGCT
CCATATACAGTCTAGGGTTATGTTTGTGGTTATTCAGTGATGTAGTTGGT
TGGTGGTTATTTGGGTAGGTGTGTGGGAGGGAGCAGAGGCGGCTCAGGGC
GGGGGGCGTTTTAGGGCATGGTAGACCGTTTTGAGGGTTGGGGGGACACG
AAAAACGGCCTGGGAGAAAAAACGGCTTTTTAAAAACAAATCTATGAACC
AGTAATACGACTTCTCCGTATGGTACATACCCTCACCAAAGGCTTTGATC
GGGTTTTTTCCCCTTTTTGCCTTTTATTGTGTATGGTGGATGTTGCGTGA
TGTTCGTAGCGGTTATGAAAGACCTCAGCTGCGAGACCGAGTGAAATAGA
ATATCGTCGAACCGCACACCAGGTACATCGTCGCAAGCGATATACGTGTG
TGATGCTTCGACTGCGCGTGCTATTACGATTTTTTATATACTCTACGTGC
ATGTATGTACGGTATTAAAAGTGTGTGATTTGGTGCTGCCCGGGGATACT
GCTGCATTTTCTTATCTAAAAGCCGGGCCTTTCAATAGTGTGCTTATTCC
CCGGCGGTGGTCCGAGCTTCCTTTCGCCTGTATCCCGGCCTGTTTTGTTC
CGCGCGTTGCTCGCGGAACGTTCCACACCGCCCATCTTGAGTACGTTCCA
GCTCGACTCTCTGGCTGGATTTGCGCCATCCGTTGCTGCGTTTTTTTTTC
TTTTTCTTTCTCACCCATCGCCGCATATTGTTTGTGTGTGTGTTTCTGTT
CCAGGTGCCGGATGCTTTCCCGTCAGGCTTGCAGCTGGTCGGGCTTGCCC
CCGAGATCAAGGTGTGCGTGCTATGTGGTGTTTGGGGCGCGAGTGCCGGA
GTTACAGCACGCTACCGTAGTCTAGTTGACTCCCGACCCGAAGTTTAGTT
AATTTCAGCCCGTGCGCCTGTGGGCCTGTCGAGGCGCACACGCCATTTTT
CTTCGGAATTTTCTATATTTGCGCAGATCTCTACATACGTACCCCACCGA
ACAAAAAAAAAAACAGATATGAGAGGGGAGACGAAGGGCGAACCCAGGGG
TCCAACGAAAAAAAAGAAGTCCCGACACCCCCACAACCCATTTTCGAGAC
CCAGACAGGGGGGGGGGGGAAGGGAACACTCACGCAAAGGGTAGAATACA
TGTGTGAAAAAAACTCGTTTTTGGTGGTTTCGTCCATAAATCCCAACGCA
CTGCTTTGTTTTTTAATTTTGAGGCGTTCTACGATAGAGGTCCACCCTAA
TTTTTCTGAGGCGCCCTTCCTCACTTGACCTTAAGGAGCTCCACACCTCA
CCCGAAAACTGACTTCGAGCAAAAATCAAACTGCATCCCGATGAATATTC
CCGTGGTCTAAGTATACGATTACGTCATTTTCCGAAACAAGATTGGTATT
TGGACTATTTTGAGTTAAGGGTCCCCGTCTTTCAGAAAAAAAAATCGCGG
AAATGTGCTACCTGTATCGTAGAACGCGTCTTTGACGCTGGGAAGGAGTG
TAGAACGTTTTCTCCCTATGTGGAGCACCGTTGGCATAGCCCGATGAAAG
CTCCCATGGTCTCGTGGGCGTGTGCCAAATAATAGTCCTGTACTATAAGC
TAAACGATATTGGATATGGCTCTCGTACCTCTCACCCAAAAAAAGACAAA
AGTCAAAACCCAGTGAAACGCTCCTATTACGCCCGAGATCGACAATTGTT
TTCAGGTGGAAACAACATGAGCTGGGAGATCGAGAAAAGGATCGAAACTC
ATATTTTCGAGCTGCGCGCGCGTGTAGCTAAAAGACTTGAATCGCGCATA
CGGGTTTTAGACTTGCCCTCTTTTGCTGGCGCCTCTTGTGCAGCAGTAGA
TTTGACACTCCCGTCTCGCCCTTGTTTTGCTCATCCGTTTTTTCTTCTCC
ATTCTGTTTTGGCGCTAAGGACGGCTTCTTGACCCTGGTCATCCCGATGA
TCAGGTTCACCGGCGGCCTCCCCGTGCTGGTGCACAGCCGCCGCTCCCCG
CCGGAAGACAACGCGTCCCAAGGCAGTGGAACTCTCGCTCTTGACAATAA
TGATGATGACCACGACGACGATGGAAGGACTTTATGGGACTTGAGAGTGA
AAGTGACTCTGCACGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9758:133..2599+

>mRNA_M-pyrifera_M_contig9758.22476.1 ID=mRNA_M-pyrifera_M_contig9758.22476.1|Name=mRNA_M-pyrifera_M_contig9758.22476.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig9758:133..2599+ (Macrocystis pyrifera P11B4 male)
AGGTACCTGTTGCAGCAGTGGTCGTCCGACCCTGAGAAACTGAAGTACCT
CTCCCTCTGGCTCCGTTGTGTCATCGAGCGTCGAAAGAGGTACCTGTTGC
AGCAGTGGTCGTCCGACCCTGAGAAACTGAAGTACCTCTCCCTCTGGCTC
CGTTGTGTCATCGAGCGTCGAAAGGTGCCGGATGCTTTCCCGTCAGGCTT
GCAGCTGGTCGGGCTTGCCCCCGAGATCAAGGTGCCGGATGCTTTCCCGT
CAGGCTTGCAGCTGGTCGGGCTTGCCCCCGAGATCAAGGACGGCTTCTTG
ACCCTGGTCATCCCGATGATCAGGTTCACCGGCGGCCTCCCCGTGCTGGT
GCACAGCCGCCGCTCCCCGCCGGAAGACAACGCGTCCCAAGGCAGTGGAA
CTCTCGCTCTTGACAATAATGATGATGACCACGACGACGATGGAAGGACT
TTATGGGACTTGAGAGTGAAAGTGACTCTGCACGGAGACGGCTTCTTGAC
CCTGGTCATCCCGATGATCAGGTTCACCGGCGGCCTCCCCGTGCTGGTGC
ACAGCCGCCGCTCCCCGCCGGAAGACAACGCGTCCCAAGGCAGTGGAACT
CTCGCTCTTGACAATAATGATGATGACCACGACGACGATGGAAGGACTTT
ATGGGACTTGAGAGTGAAAGTGACTCTGCACGGA
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