mRNA_M-pyrifera_M_contig9756.22475.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9756.22475.1
Unique NamemRNA_M-pyrifera_M_contig9756.22475.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9756.22475.1 vs. uniprot
Match: D7G3X4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.070e-14
Identity = 43/95 (45.26%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  206 MFFSEVGTDALENLFAFVRTLTHACNVDAKDLADSLGPAVALEEVYNKHPCWTKASRRLNETLDHMN-LTWDTGGPAANCDVRGLDMTACWKGAR 487
            +FF ++GTD LE LFAFVRT TH  N D   LA     A  L ++Y+KHP W + S+RL  + D MN L+W  G    N  V G+D+  CW   R
Sbjct:  643 LFFFQLGTDRLEQLFAFVRTTTHDRNCDMLLLALRFASAYQLAKIYDKHPSWRRPSKRLEGSEDAMNTLSWMEGAEG-NTRVDGVDLRECWVNGR 736
[Close]
BLAST of mRNA_M-pyrifera_M_contig9756.22475.1 vs. uniprot
Match: A0A4Z0A4Z5_9AGAM (Uncharacterized protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A4Z5_9AGAM)

HSP 1 Score: 57.8 bits (138), Expect = 1.140e-6
Identity = 36/94 (38.30%), Postives = 46/94 (48.94%), Query Frame = 1 
Query:    1 LLAEICDPSKSVAQFFQGLSCVSHMVLILFRTHRTSFMTGQLYHDTHAMVRAFFHCVRPAQKFYPSAPNVFF--GSWHRCP*KFVRFRTDSDPC 276
            LL    DP  S++   + LS  +HM   LF  H+ SFMTGQLY DT A+V+A F C+       P+     +  GS  R    F   RT S  C
Sbjct:  648 LLQAFIDPMFSLSDQLRSLSTYAHMCFALFSRHKASFMTGQLYSDTQALVKAAFICIARQSLLDPTKAFYLYQLGS-DRLEEIFCEVRTMSHDC 740
[Close]
BLAST of mRNA_M-pyrifera_M_contig9756.22475.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.370e-6
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 2 
Query:  197 RRQMFFSEVGTDALENLFAFVRTLTHACNVDAKDLADSLGPAVALEEV-----YNKHPCWTKASRRLNETLDHM 403
            R +++   +GTD LENLFA VRTLTHA NVDAK+  +  G  + +E+V        HP +  +  R  ET+  +
Sbjct:  107 RERLYLWMIGTDGLENLFAIVRTLTHASNVDAKEAIERFGAVIGVEQVDAVDILRGHPSYEASVNR--ETISEL 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig9756.22475.1 vs. uniprot
Match: UPI001B8631CE (uncharacterized protein n=1 Tax=Suillus clintonianus TaxID=1904413 RepID=UPI001B8631CE)

HSP 1 Score: 53.5 bits (127), Expect = 3.240e-5
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:    1 LLAEICDPSKSVAQFFQGLSCVSHMVLILFRTHRTSFMTGQLYHDTHAMVRAFFHCVRPAQKFYPSAPNVFFG 219
            ++    D + S+ +  Q LS ++H+   LFR+HR SF++ QLY+DTH M++    CV   Q   P A + F G
Sbjct:  417 IILPFTDVNLSLTEQIQYLSRLAHLTFTLFRSHRRSFLSYQLYYDTHTMLKNVIFCVSKQQILDPQA-SFFLG 488
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9756.22475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G3X4_ECTSI1.070e-1445.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4Z0A4Z5_9AGAM1.140e-638.30Uncharacterized protein n=1 Tax=Hericium alpestre ... [more]
A0A6H5L2E6_9PHAE1.370e-640.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001B8631CE3.240e-536.99uncharacterized protein n=1 Tax=Suillus clintonian... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9756contigM-pyrifera_M_contig9756:6568..7063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue5.9e-13
Seed eggNOG ortholog2880.D7G3X4
Hectar predicted targeting categoryother localisation
EggNOG OGs2DMFT@1,2S64X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size496
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.8389232-UTR-M-pyrifera_M_contig9756:6567..67061622816892.8389232-UTR-M-pyrifera_M_contig9756:6567..6706Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9756 6568..6706 +
1692278240.4008887-UTR-M-pyrifera_M_contig9756:6567..67061692278240.4008887-UTR-M-pyrifera_M_contig9756:6567..6706Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9756 6568..6706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.85019-CDS-M-pyrifera_M_contig9756:6706..70631622816892.85019-CDS-M-pyrifera_M_contig9756:6706..7063Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9756 6707..7063 +
1692278240.4239855-CDS-M-pyrifera_M_contig9756:6706..70631692278240.4239855-CDS-M-pyrifera_M_contig9756:6706..7063Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9756 6707..7063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9756.22475.1prot_M-pyrifera_M_contig9756.22475.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9756 6707..7063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9756.22475.1

>prot_M-pyrifera_M_contig9756.22475.1 ID=prot_M-pyrifera_M_contig9756.22475.1|Name=mRNA_M-pyrifera_M_contig9756.22475.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MRWSAPSSTVSAQHKSSTRRRQMFFSEVGTDALENLFAFVRTLTHACNVD
AKDLADSLGPAVALEEVYNKHPCWTKASRRLNETLDHMNLTWDTGGPAAN
CDVRGLDMTACWKGARADA
back to top

mRNA from alignment at M-pyrifera_M_contig9756:6568..7063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9756.22475.1 ID=mRNA_M-pyrifera_M_contig9756.22475.1|Name=mRNA_M-pyrifera_M_contig9756.22475.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=496bp|location=Sequence derived from alignment at M-pyrifera_M_contig9756:6568..7063+ (Macrocystis pyrifera P11B4 male)
CTTCTGGCCGAGATATGCGACCCTTCGAAGAGTGTGGCTCAATTTTTTCA
GGGACTGTCGTGCGTGTCGCACATGGTGCTCATTCTCTTTCGTACTCACC
GGACATCGTTCATGACGGGCCAGCTTTACCACGACACACATGCGATGGTC
CGCGCCTTCTTCCACTGTGTCCGCCCAGCACAAAAGTTCTACCCGTCGGC
GCCAAATGTTTTTTTCGGAAGTTGGCACCGATGCCCTTGAAAATTTGTTC
GCTTTCGTACGGACTCTGACCCATGCCTGCAATGTCGACGCCAAGGATCT
TGCTGATAGCCTCGGTCCTGCTGTTGCGCTGGAGGAGGTCTACAACAAGC
ACCCCTGCTGGACAAAGGCTTCAAGGCGCTTGAACGAGACTCTCGACCAC
ATGAACCTAACGTGGGATACGGGCGGACCCGCAGCGAATTGCGACGTGCG
GGGTTTGGACATGACCGCATGCTGGAAGGGGGCGAGGGCGGACGCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9756:6568..7063+

>mRNA_M-pyrifera_M_contig9756.22475.1 ID=mRNA_M-pyrifera_M_contig9756.22475.1|Name=mRNA_M-pyrifera_M_contig9756.22475.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig9756:6568..7063+ (Macrocystis pyrifera P11B4 male)
ATGCGATGGTCCGCGCCTTCTTCCACTGTGTCCGCCCAGCACAAAAGTTC
TACCCGTCGGCGCCAAATGTTTTTTTCGGAAGTTGGCACCGATGCCCTTG
AAAATTTGTTCGCTTTCGTACGGACTCTGACCCATGCCTGCAATGTCGAC
GCCAAGGATCTTGCTGATAGCCTCGGTCCTGCTGTTGCGCTGGAGGAGGT
CTACAACAAGCACCCCTGCTGGACAAAGGCTTCAAGGCGCTTGAACGAGA
CTCTCGACCACATGAACCTAACGTGGGATACGGGCGGACCCGCAGCGAAT
TGCGACGTGCGGGGTTTGGACATGACCGCATGCTGGAAGGGGGCGAGGGC
GGACGCTATGCGATGGTCCGCGCCTTCTTCCACTGTGTCCGCCCAGCACA
AAAGTTCTACCCGTCGGCGCCAAATGTTTTTTTCGGAAGTTGGCACCGAT
GCCCTTGAAAATTTGTTCGCTTTCGTACGGACTCTGACCCATGCCTGCAA
TGTCGACGCCAAGGATCTTGCTGATAGCCTCGGTCCTGCTGTTGCGCTGG
AGGAGGTCTACAACAAGCACCCCTGCTGGACAAAGGCTTCAAGGCGCTTG
AACGAGACTCTCGACCACATGAACCTAACGTGGGATACGGGCGGACCCGC
AGCGAATTGCGACGTGCGGGGTTTGGACATGACCGCATGCTGGAAGGGGG
CGAGGGCGGACGCT
back to top