mRNA_M-pyrifera_M_contig110681.2247.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110681.2247.1
Unique NamemRNA_M-pyrifera_M_contig110681.2247.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110681.2247.1 vs. uniprot
Match: A0A7X5WT35_9ACTN (Beta-ketoacyl-ACP synthase II n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WT35_9ACTN)

HSP 1 Score: 332 bits (851), Expect = 2.360e-111
Identity = 168/198 (84.85%), Postives = 182/198 (91.92%), Query Frame = 1
Query:    1 AVAGFGNMTALSNSGVSRPFDADRDGFVIAEGAAILVLEEWDRAAARGATILGEILGSASTADAHHITAPAPGGTGAISCMQLAMEDAGITAGDVVHINAHGTSTDKNDAAEAAAVAKVFGTPGPAITSTKGVTGHALGAAGALEAVAILAAMAKGVIPPTVGHERMDADMPEIDLVVGDPRPWTPGPSLSNSFGFGG 594
            AVAGF NMTALS SGVSRPFDADRDGFV+AEG A+LVLEEW+RA ARGATIL EILGSASTADAHHITAPAPGGTGA+SCMQLAM+DAGITA DVVHINAHGT+TD NDAAEAAA+AK+FG PGPA+TSTKGVTGHALG AGALEA A++ AM +G+IPPT GHE  D D+PEIDLVVGDPRPWTPGPSLSNSFGFGG
Sbjct:  183 AVAGFANMTALSGSGVSRPFDADRDGFVMAEGCAVLVLEEWERAEARGATILAEILGSASTADAHHITAPAPGGTGAVSCMQLAMDDAGITAADVVHINAHGTATDMNDAAEAAAIAKLFGRPGPAVTSTKGVTGHALGGAGALEAAAVVLAMQRGLIPPTAGHETPDPDVPEIDLVVGDPRPWTPGPSLSNSFGFGG 380          
BLAST of mRNA_M-pyrifera_M_contig110681.2247.1 vs. uniprot
Match: A0A6B1AWU8_9ACTN (Beta-ketoacyl-ACP synthase II n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AWU8_9ACTN)

HSP 1 Score: 314 bits (804), Expect = 3.150e-104
Identity = 162/198 (81.82%), Postives = 179/198 (90.40%), Query Frame = 1
Query:    1 AVAGFGNMTALSNSGVSRPFDADRDGFVIAEGAAILVLEEWDRAAARGATILGEILGSASTADAHHITAPAPGGTGAISCMQLAMEDAGITAGDVVHINAHGTSTDKNDAAEAAAVAKVFGTPGPAITSTKGVTGHALGAAGALEAVAILAAMAKGVIPPTVGHERMDADMPEIDLVVGDPRPWTPGPSLSNSFGFGG 594
            AVAGF NMTALS+SGVSRPFD  RDGFV+AEGAA+LVLEE   A ARGATILGEILGSASTADAHHITAPAPGGTGAI+CM+LA+EDAGITA +VVHINAHGTSTDKNDAAEAAA+AK+FGTPGP ITSTKGVTGHALG AGALEA A+L +M+  +IPPT GHE +D +MP+IDLVVG+PR W PGPSLSNSFGFGG
Sbjct:  183 AVAGFSNMTALSSSGVSRPFDPRRDGFVMAEGAAVLVLEELSHAEARGATILGEILGSASTADAHHITAPAPGGTGAITCMRLAIEDAGITAEEVVHINAHGTSTDKNDAAEAAAIAKIFGTPGPVITSTKGVTGHALGGAGALEAAAVLLSMSHRLIPPTAGHETLDPEMPDIDLVVGEPRRWVPGPSLSNSFGFGG 380          
BLAST of mRNA_M-pyrifera_M_contig110681.2247.1 vs. uniprot
Match: A0A3M2H4K5_ACTSX (Beta-ketoacyl-ACP synthase II n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H4K5_ACTSX)

HSP 1 Score: 300 bits (767), Expect = 1.310e-98
Identity = 149/198 (75.25%), Postives = 174/198 (87.88%), Query Frame = 1
Query:    1 AVAGFGNMTALSNSGVSRPFDADRDGFVIAEGAAILVLEEWDRAAARGATILGEILGSASTADAHHITAPAPGGTGAISCMQLAMEDAGITAGDVVHINAHGTSTDKNDAAEAAAVAKVFGTPGPAITSTKGVTGHALGAAGALEAVAILAAMAKGVIPPTVGHERMDADMPEIDLVVGDPRPWTPGPSLSNSFGFGG 594
            A+AGF NMTALS+SG+SRPFDA+RDGFV+ EGAA+LVLEE +RA ARGAT+L EI GSASTADAHHITAPAPGG+GA+ CM+LA+ DAG+ A D+VH+NAHGTSTD NDAAEA A+AKVFG PGP +TSTKGVTGHALGAAGALEA A++ +M KGVIPPT G   +D  +PE+DLVVG+PR WTPGPS+SNSFGFGG
Sbjct:  183 AIAGFSNMTALSSSGISRPFDAERDGFVMGEGAAVLVLEERERALARGATVLAEIAGSASTADAHHITAPAPGGSGAVHCMELALADAGLAAADIVHVNAHGTSTDLNDAAEAEALAKVFGAPGPIVTSTKGVTGHALGAAGALEAAAVVLSMVKGVIPPTAGTRAVDPTLPELDLVVGEPRAWTPGPSISNSFGFGG 380          
BLAST of mRNA_M-pyrifera_M_contig110681.2247.1 vs. uniprot
Match: A0A3C0HQD3_9ACTN (Beta-ketoacyl synthase n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HQD3_9ACTN)

HSP 1 Score: 290 bits (742), Expect = 8.210e-95
Identity = 153/200 (76.50%), Postives = 170/200 (85.00%), Query Frame = 1
Query:    1 AVAGFGNMTALSNSGVSRPFDADRDGFVIAEGAAILVLEEWDRAAARGATILGEILGSASTADAHHITAPAPGGTGAISCMQLAMEDAGITAGDVVHINAHGTSTDKNDAAEAAAVAKVFGTP--GPAITSTKGVTGHALGAAGALEAVAILAAMAKGVIPPTVGHERMDADMPEIDLVVGDPRPWTPGPSLSNSFGFGG 594
            AVAGFGNMTALSNSG SRPFD++RDGFV+AEGAAILVLE W+ A ARGATILGE+LGSASTADAHHITAP+PGG GA++CMQLAM+DAGIT   V HINAHGTSTDKNDAAEA AVAKVFGT   GP +TSTKG+TGHALGAAGALEAVA+L AM  G +PPT G    D ++P I++V G P  W PGPSLSNSFGFGG
Sbjct:  183 AVAGFGNMTALSNSGDSRPFDSNRDGFVMAEGAAILVLEAWELAEARGATILGEVLGSASTADAHHITAPSPGGVGAVTCMQLAMDDAGITPDQVRHINAHGTSTDKNDAAEAEAVAKVFGTDDSGPLVTSTKGITGHALGAAGALEAVAVLLAMQHGKVPPTAGLTERDPELPAINIVEGGPADWEPGPSLSNSFGFGG 382          
BLAST of mRNA_M-pyrifera_M_contig110681.2247.1 vs. uniprot
Match: UPI001AA0546C (beta-ketoacyl-[acyl-carrier-protein] synthase family protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0546C)

HSP 1 Score: 290 bits (742), Expect = 1.080e-94
Identity = 144/197 (73.10%), Postives = 171/197 (86.80%), Query Frame = 1
Query:    4 VAGFGNMTALSNSGVSRPFDADRDGFVIAEGAAILVLEEWDRAAARGATILGEILGSASTADAHHITAPAPGGTGAISCMQLAMEDAGITAGDVVHINAHGTSTDKNDAAEAAAVAKVFGTPGPAITSTKGVTGHALGAAGALEAVAILAAMAKGVIPPTVGHERMDADMPEIDLVVGDPRPWTPGPSLSNSFGFGG 594
            +AGF NMTALS+SGVSRPFD DRDGFV+AEG A+LVLEEW+ A  RGATIL E+LGSASTADAHHITAP+P G+GAI+CMQLA+EDAG+   DV H+NAHGTST  NDAAEA A+AK+FGTPGP ITS KGVTGH+LGAAGALEAV+++ +M KG++PPT G+E  D ++P ID+V G+PRPW PGP+LSNSFGFGG
Sbjct:  190 IAGFTNMTALSSSGVSRPFDRDRDGFVMAEGGAVLVLEEWESAQRRGATILAEVLGSASTADAHHITAPSPDGSGAIACMQLALEDAGVDPSDVRHVNAHGTSTPLNDAAEAEAIAKLFGTPGPPITSIKGVTGHSLGAAGALEAVSVVLSMVKGLLPPTAGYEHPDPELPPIDVVHGEPRPWQPGPTLSNSFGFGG 386          
BLAST of mRNA_M-pyrifera_M_contig110681.2247.1 vs. uniprot
Match: A0A7Y2GRH0_9ACTN (Beta-ketoacyl-ACP synthase II n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GRH0_9ACTN)

HSP 1 Score: 288 bits (738), Expect = 3.020e-94
Identity = 145/198 (73.23%), Postives = 171/198 (86.36%), Query Frame = 1
Query:    1 AVAGFGNMTALSNSGVSRPFDADRDGFVIAEGAAILVLEEWDRAAARGATILGEILGSASTADAHHITAPAPGGTGAISCMQLAMEDAGITAGDVVHINAHGTSTDKNDAAEAAAVAKVFGTPGPAITSTKGVTGHALGAAGALEAVAILAAMAKGVIPPTVGHERMDADMPEIDLVVGDPRPWTPGPSLSNSFGFGG 594
            A+AGFGNMTALS  G+S PFDA RDGF++ EGAA+LVLEEWDRA  RGATI+GE+LG+ASTADAHHITAPAPGG+GA+  M+LAMEDAG+  GD+VHINAHGTST  NDAAEA A+AKVFG PGP +TSTKG+TGHALGAAGALEA A++ A+   +IP T G+E+ D ++P IDLVVG+PR WTPGPS+SNSFGFGG
Sbjct:  181 ALAGFGNMTALSTRGISVPFDARRDGFMMGEGAAVLVLEEWDRAVQRGATIIGEMLGAASTADAHHITAPAPGGSGAVRSMELAMEDAGLGPGDIVHINAHGTSTPLNDAAEAHAMAKVFGEPGPIVTSTKGITGHALGAAGALEAAAVVLAIEHELIPQTAGYEQPDPELPSIDLVVGEPRSWTPGPSMSNSFGFGG 378          
BLAST of mRNA_M-pyrifera_M_contig110681.2247.1 vs. uniprot
Match: A0A7K1YTJ4_9ACTN (Beta-ketoacyl-ACP synthase II n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1YTJ4_9ACTN)

HSP 1 Score: 287 bits (735), Expect = 1.030e-93
Identity = 146/199 (73.37%), Postives = 171/199 (85.93%), Query Frame = 1
Query:    1 AVAGFGNMTALSNSGVSRPFDADRDGFVIAEGAAILVLEEWDRAAARGATILGEILGSASTADAHHITAPAPGGTGAISCMQLAMEDAGITAGDVVHINAHGTSTDKNDAAEAAAVAKVFGT-PGPAITSTKGVTGHALGAAGALEAVAILAAMAKGVIPPTVGHERMDADMPEIDLVVGDPRPWTPGPSLSNSFGFGG 594
            AVAGF NMTALS+SGVSRPFDA RDGFV+AEGAA+LVLE+WD A ARGA IL E+LGSASTADAHHITAP+PGG+GA+ CMQLA++DAG+   DVVH+NAHGTSTD NDAAEA A++KVFGT PGP +TSTKGVTGHALGAAGALEA+A++  M KG+IPPT G   +D ++P I +V G+P PW PG S+SNSFGFGG
Sbjct:  186 AVAGFTNMTALSSSGVSRPFDAQRDGFVMAEGAAVLVLEDWDMAQARGAPILAEVLGSASTADAHHITAPSPGGSGAVHCMQLALDDAGVRPADVVHVNAHGTSTDLNDAAEAEALSKVFGTSPGPLVTSTKGVTGHALGAAGALEALAVVLGMQKGLIPPTAGLTELDPELPPIQVVTGEPAPWEPGVSISNSFGFGG 384          
BLAST of mRNA_M-pyrifera_M_contig110681.2247.1 vs. uniprot
Match: A0A432JN69_9ACTN (Beta-ketoacyl synthase n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A432JN69_9ACTN)

HSP 1 Score: 286 bits (733), Expect = 1.780e-93
Identity = 143/198 (72.22%), Postives = 169/198 (85.35%), Query Frame = 1
Query:    1 AVAGFGNMTALSNSGVSRPFDADRDGFVIAEGAAILVLEEWDRAAARGATILGEILGSASTADAHHITAPAPGGTGAISCMQLAMEDAGITAGDVVHINAHGTSTDKNDAAEAAAVAKVFGTPGPAITSTKGVTGHALGAAGALEAVAILAAMAKGVIPPTVGHERMDADMPEIDLVVGDPRPWTPGPSLSNSFGFGG 594
            A+AGF NMTALS++G+SRPFDADRDGFV+ EGA IL+LEEWD A  RGAT+L E+LG ASTADAHHITAP+PGG GAI+CM+LAME+AGI   DV HINAHGTST  ND AEA AV K+FG  GP +TSTKG+TGHALGAAGALEAVA+++AM + ++PPT GH   D +MP+I+LVVG+P PWTPGP+LSNSFGFGG
Sbjct:  183 AMAGFTNMTALSSAGISRPFDADRDGFVMGEGAGILLLEEWDIALERGATVLAEVLGGASTADAHHITAPSPGGVGAITCMELAMEEAGIKPADVTHINAHGTSTPLNDMAEAVAVNKLFGAAGPLLTSTKGITGHALGAAGALEAVAVVSAMQRRLVPPTAGHTTDDPEMPQINLVVGEPAPWTPGPALSNSFGFGG 380          
BLAST of mRNA_M-pyrifera_M_contig110681.2247.1 vs. uniprot
Match: A0A520Y0C7_9ACTN (Beta-ketoacyl-ACP synthase II n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y0C7_9ACTN)

HSP 1 Score: 285 bits (730), Expect = 5.210e-93
Identity = 148/199 (74.37%), Postives = 169/199 (84.92%), Query Frame = 1
Query:    1 AVAGFGNMTALSNSGVSRPFDADRDGFVIAEGAAILVLEEWDRAAARGATILGEILGSASTADAHHITAPAPGGTGAISCMQLAMEDAGITAGDVVHINAHGTSTDKNDAAEAAAVAKVFG-TPGPAITSTKGVTGHALGAAGALEAVAILAAMAKGVIPPTVGHERMDADMPEIDLVVGDPRPWTPGPSLSNSFGFGG 594
            A+AGF NMTALSN   SRPFD +RDGFV+AEGAA+L+LEEW+RA ARGATIL E+LG+ASTADAHHITAP+PGG GA++C++LA+EDAG++  D+ HINAHGTST  NDAAEA A+ KVFG T  PA+TSTKGVTGHALGAAGALEA AI+ AM  G IPPTVGH   D  MPEIDLVVG+ R WTPGPSLSNSFGFGG
Sbjct:  183 ALAGFRNMTALSNENFSRPFDLNRDGFVMAEGAAVLILEEWERAEARGATILAEVLGAASTADAHHITAPSPGGVGAVNCIELALEDAGLSPADITHINAHGTSTPLNDAAEAEAINKVFGGTDRPAVTSTKGVTGHALGAAGALEAAAIVLAMQHGKIPPTVGHTTPDPAMPEIDLVVGEARDWTPGPSLSNSFGFGG 381          
BLAST of mRNA_M-pyrifera_M_contig110681.2247.1 vs. uniprot
Match: A0A7Y2N895_9ACTN (Beta-ketoacyl-ACP synthase II n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N895_9ACTN)

HSP 1 Score: 284 bits (727), Expect = 1.440e-92
Identity = 142/198 (71.72%), Postives = 172/198 (86.87%), Query Frame = 1
Query:    1 AVAGFGNMTALSNSGVSRPFDADRDGFVIAEGAAILVLEEWDRAAARGATILGEILGSASTADAHHITAPAPGGTGAISCMQLAMEDAGITAGDVVHINAHGTSTDKNDAAEAAAVAKVFGTPGPAITSTKGVTGHALGAAGALEAVAILAAMAKGVIPPTVGHERMDADMPEIDLVVGDPRPWTPGPSLSNSFGFGG 594
            ++AGFGNMTALS++G+S PFDA RDGF++ EGA ++VLEEW+ A  RGATI+GE+LG+ASTADAHHITAPAPGG+GA+  M+LAME AG+ A D+VHINAHGTST  ND+AEA A+AKVFG PGP +TSTKG+TGHALGAAGALEAVA+L AM   +IPPT G E +D ++P I+LVVG+PRPWTPGPS+SNSFGFGG
Sbjct:  182 SLAGFGNMTALSSAGISVPFDARRDGFMMGEGAGVIVLEEWNHALDRGATIIGEMLGAASTADAHHITAPAPGGSGAVRSMELAMEHAGLRASDIVHINAHGTSTPLNDSAEAHAMAKVFGEPGPLVTSTKGITGHALGAAGALEAVAVLLAMEHKLIPPTAGFEIVDPELPAINLVVGEPRPWTPGPSMSNSFGFGG 379          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110681.2247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WT35_9ACTN2.360e-11184.85Beta-ketoacyl-ACP synthase II n=1 Tax=Actinomyceti... [more]
A0A6B1AWU8_9ACTN3.150e-10481.82Beta-ketoacyl-ACP synthase II n=1 Tax=Acidimicrobi... [more]
A0A3M2H4K5_ACTSX1.310e-9875.25Beta-ketoacyl-ACP synthase II n=1 Tax=Actinomyces ... [more]
A0A3C0HQD3_9ACTN8.210e-9576.50Beta-ketoacyl synthase n=4 Tax=Acidimicrobiaceae b... [more]
UPI001AA0546C1.080e-9473.10beta-ketoacyl-[acyl-carrier-protein] synthase fami... [more]
A0A7Y2GRH0_9ACTN3.020e-9473.23Beta-ketoacyl-ACP synthase II n=1 Tax=Acidimicrobi... [more]
A0A7K1YTJ4_9ACTN1.030e-9373.37Beta-ketoacyl-ACP synthase II n=7 Tax=Acidimicrobi... [more]
A0A432JN69_9ACTN1.780e-9372.22Beta-ketoacyl synthase n=3 Tax=Actinobacteria TaxI... [more]
A0A520Y0C7_9ACTN5.210e-9374.37Beta-ketoacyl-ACP synthase II n=1 Tax=Acidimicrobi... [more]
A0A7Y2N895_9ACTN1.440e-9271.72Beta-ketoacyl-ACP synthase II n=1 Tax=Acidimicrobi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110681contigM-pyrifera_M_contig110681:3..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score234.6
Seed ortholog evalue3.9e-59
Seed eggNOG ortholog1313172.YM304_21300
KEGG rclassRC00039,RC02728,RC02729,RC02888
KEGG koko:K09458
KEGG ReactionR04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119
KEGG Pathwayko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Beta-ketoacyl synthase, C-terminal domain
EggNOG OGs2GIY4@201174,4CMVV@84992,COG0304@1,COG0304@2
EC2.3.1.179
COG Functional cat.IQ
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Exons1
Model size594
Cds size573
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.8824413-UTR-M-pyrifera_M_contig110681:2..231622815618.8824413-UTR-M-pyrifera_M_contig110681:2..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110681 3..23 +
1692277490.3158038-UTR-M-pyrifera_M_contig110681:2..231692277490.3158038-UTR-M-pyrifera_M_contig110681:2..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110681 3..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.8954635-CDS-M-pyrifera_M_contig110681:23..5961622815618.8954635-CDS-M-pyrifera_M_contig110681:23..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110681 24..596 +
1692277490.3267963-CDS-M-pyrifera_M_contig110681:23..5961692277490.3267963-CDS-M-pyrifera_M_contig110681:23..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110681 24..596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110681.2247.1prot_M-pyrifera_M_contig110681.2247.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110681 24..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110681.2247.1

>prot_M-pyrifera_M_contig110681.2247.1 ID=prot_M-pyrifera_M_contig110681.2247.1|Name=mRNA_M-pyrifera_M_contig110681.2247.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
MTALSNSGVSRPFDADRDGFVIAEGAAILVLEEWDRAAARGATILGEILG
SASTADAHHITAPAPGGTGAISCMQLAMEDAGITAGDVVHINAHGTSTDK
NDAAEAAAVAKVFGTPGPAITSTKGVTGHALGAAGALEAVAILAAMAKGV
IPPTVGHERMDADMPEIDLVVGDPRPWTPGPSLSNSFGFGG
back to top

mRNA from alignment at M-pyrifera_M_contig110681:3..596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110681.2247.1 ID=mRNA_M-pyrifera_M_contig110681.2247.1|Name=mRNA_M-pyrifera_M_contig110681.2247.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig110681:3..596+ (Macrocystis pyrifera P11B4 male)
GCGGTCGCCGGATTCGGCAACATGACCGCGCTTTCCAACTCTGGCGTGAG CCGCCCCTTCGACGCCGACCGCGACGGATTCGTGATCGCCGAAGGCGCCG CCATCCTGGTGCTCGAGGAATGGGACCGTGCCGCCGCACGAGGCGCCACC ATCCTCGGCGAGATCCTCGGCTCGGCCTCCACCGCCGACGCCCACCACAT CACGGCGCCTGCGCCCGGCGGCACCGGCGCCATCAGCTGCATGCAGCTGG CTATGGAAGACGCCGGCATCACCGCAGGCGACGTGGTCCACATCAACGCT CACGGCACGTCCACCGACAAGAACGACGCCGCCGAGGCCGCTGCGGTCGC CAAGGTCTTCGGGACCCCCGGCCCCGCGATCACGTCCACCAAGGGCGTCA CCGGCCACGCCCTGGGCGCTGCGGGTGCGCTCGAGGCCGTCGCCATCCTC GCCGCCATGGCCAAGGGCGTCATCCCGCCCACGGTGGGCCACGAGCGTAT GGACGCCGACATGCCCGAGATCGATCTCGTGGTCGGCGATCCCCGCCCCT GGACCCCCGGCCCGTCGCTGTCCAACAGCTTCGGCTTCGGCGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110681:3..596+

>mRNA_M-pyrifera_M_contig110681.2247.1 ID=mRNA_M-pyrifera_M_contig110681.2247.1|Name=mRNA_M-pyrifera_M_contig110681.2247.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig110681:3..596+ (Macrocystis pyrifera P11B4 male)
ATGACCGCGCTTTCCAACTCTGGCGTGAGCCGCCCCTTCGACGCCGACCG
CGACGGATTCGTGATCGCCGAAGGCGCCGCCATCCTGGTGCTCGAGGAAT
GGGACCGTGCCGCCGCACGAGGCGCCACCATCCTCGGCGAGATCCTCGGC
TCGGCCTCCACCGCCGACGCCCACCACATCACGGCGCCTGCGCCCGGCGG
CACCGGCGCCATCAGCTGCATGCAGCTGGCTATGGAAGACGCCGGCATCA
CCGCAGGCGACGTGGTCCACATCAACGCTCACGGCACGTCCACCGACAAG
AACGACGCCGCCGAGGCCGCTGCGGTCGCCAAGGTCTTCGGGACCCCCGG
CCCCGCGATCACGTCCACCAAGGGCGTCACCGGCCACGCCCTGGGCGCTG
CGGGTGCGCTCGAGGCCGTCGCCATCCTCGCCGCCATGGCCAAGGGCGTC
ATCCCGCCCACGGTGGGCCACGAGCGTATGGACGCCGACATGCCCGAGAT
CGATCTCGTGGTCGGCGATCCCCGCCCCTGGACCCCCGGCCCGTCGCTGT
CCAACAGCTTCGGCTTCGGCGGCATGACCGCGCTTTCCAACTCTGGCGTG
AGCCGCCCCTTCGACGCCGACCGCGACGGATTCGTGATCGCCGAAGGCGC
CGCCATCCTGGTGCTCGAGGAATGGGACCGTGCCGCCGCACGAGGCGCCA
CCATCCTCGGCGAGATCCTCGGCTCGGCCTCCACCGCCGACGCCCACCAC
ATCACGGCGCCTGCGCCCGGCGGCACCGGCGCCATCAGCTGCATGCAGCT
GGCTATGGAAGACGCCGGCATCACCGCAGGCGACGTGGTCCACATCAACG
CTCACGGCACGTCCACCGACAAGAACGACGCCGCCGAGGCCGCTGCGGTC
GCCAAGGTCTTCGGGACCCCCGGCCCCGCGATCACGTCCACCAAGGGCGT
CACCGGCCACGCCCTGGGCGCTGCGGGTGCGCTCGAGGCCGTCGCCATCC
TCGCCGCCATGGCCAAGGGCGTCATCCCGCCCACGGTGGGCCACGAGCGT
ATGGACGCCGACATGCCCGAGATCGATCTCGTGGTCGGCGATCCCCGCCC
CTGGACCCCCGGCCCGTCGCTGTCCAACAGCTTCGGCTTCGGCGGC
back to top