mRNA_M-pyrifera_M_contig97528.22468.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97528.22468.1
Unique NamemRNA_M-pyrifera_M_contig97528.22468.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97528.22468.1 vs. uniprot
Match: A0A1X2IF82_9FUNG (Uncharacterized protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IF82_9FUNG)

HSP 1 Score: 89.7 bits (221), Expect = 2.010e-18
Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    1 VLGSLFYPSEVDLLSGWVHHIAYTIIAFYMLRNNRCRVFRAMMLEELPTLLLALSKMHEPWR-DVLYIPFGISFILLRVLFHFLFHTYIYTHYGPEMNPVDHGLLIASLSMHLYWAYGFIKSQ 366
            ++G   YPS++D+L+GWVHHI Y  +  ++L  +   VF AM L E+PT LLAL  +H PWR D L   F  +F+  R++FH       +  Y     P+   L  A L +H+YW +GFIK Q
Sbjct:  111 IIGWYRYPSKIDMLTGWVHHITYFCLLSWVLNQHFTGVFIAMCLLEIPTFLLALGSIHSPWRRDYL---FASAFLSTRIVFHSFMIASAFRLY--RFGPITCALS-AFLPVHIYWFFGFIKQQ 227          
BLAST of mRNA_M-pyrifera_M_contig97528.22468.1 vs. uniprot
Match: A0A1X0S8G8_RHIZD (Uncharacterized protein n=2 Tax=Rhizopus TaxID=4842 RepID=A0A1X0S8G8_RHIZD)

HSP 1 Score: 86.3 bits (212), Expect = 1.010e-17
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 1
Query:    1 VLGSLFYPSEVDLLSGWVHHIAYTIIAFYMLRNNRCRVFRAMMLEELPTLLLALSKMHEPWR-DVLYIPFGISFILLRVLFHF--LFHTYIYTHYGPEMNPVDHGLLIASLSMHLYWAYGFIKSQI 369
            ++GSLFYP ++ LL+GW+HHI Y  +  + +    C +F  M L E+PT LLAL  +   +R D L   F  +F+L R+LFH   +   +    +GP M       L A   +H +W YGFIK Q+
Sbjct:   94 MIGSLFYPKKIGLLTGWIHHIVYIGVLTWAISQGYCSIFIMMCLLEVPTFLLALGSVRNQFRHDYL---FAFTFVLTRILFHAYTILCAFQLKPFGPIMIA-----LTAFFPLHCFWFYGFIKQQL 211          
BLAST of mRNA_M-pyrifera_M_contig97528.22468.1 vs. uniprot
Match: A0A2G4SUA5_RHIZD (Uncharacterized protein n=3 Tax=Rhizopus TaxID=4842 RepID=A0A2G4SUA5_RHIZD)

HSP 1 Score: 83.2 bits (204), Expect = 4.580e-17
Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 1
Query:    1 VLGSLFYPSEVDLLSGWVHHIAYTIIAFYMLRNNRCRVFRAMMLEELPTLLLALSKMHEPWR-DVLYIPFGISFILLRVLFHF--LFHTYIYTHYGPEMNPVDHGLLIASLSMHLYWAYGFIKSQI 369
            ++GSLFYP ++ +L+GW+HHI Y  +  + +    C +F  M L E+PT LLAL  +   +R D L   F  +F+L R+LFH   +   +    +GP M       L A   +H +W YGFI  Q+
Sbjct:   27 LIGSLFYPKKIGILTGWIHHIVYIGVLTWAISQRYCSIFVMMCLLEVPTFLLALGSVRNQFRHDYL---FAFTFVLTRILFHAYAILCAFQLKPFGPIMIA-----LTAFFPLHCFWFYGFIMQQL 144          
BLAST of mRNA_M-pyrifera_M_contig97528.22468.1 vs. uniprot
Match: A0A0G4EIY9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EIY9_VITBC)

HSP 1 Score: 84.7 bits (208), Expect = 8.680e-17
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    1 VLGSLFYPSEVDLLSGWVHHIAYTIIAFYMLRNNRCRVFRAMMLEELPTLLLALSKMHEPWRDVLYIPFGISFILLRVLFH------FLFHTYIYTHYGPEMNPVDHGLLIASLSMHLYWAYGFIKSQIYPKQKKKSE 396
            VLG+LFYP  +D+LSGWVHH  YT+I  Y L + +  +F    ++E+PT++L +  +H PWR      FGI+F L RV++H       L+H          +  V    +  SL+MH +W   +   ++   + KK E
Sbjct:  203 VLGTLFYPRTIDVLSGWVHHGVYTVIMLYALASKQVWIFMLFGIDEIPTVMLGIGNIHVPWRFDW--SFGIAFWLTRVVWHTCVLGLLLYHRIWMADVRLSVTLV---FVTLSLAMHCHWITNWASKKVKNHRNKKKE 335          
BLAST of mRNA_M-pyrifera_M_contig97528.22468.1 vs. uniprot
Match: A0A168H3Q2_MUCCL (Uncharacterized protein n=4 Tax=Mucor TaxID=4830 RepID=A0A168H3Q2_MUCCL)

HSP 1 Score: 81.3 bits (199), Expect = 1.010e-15
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    1 VLGSLFYPSEVDLLSGWVHHIAYTIIAFYMLRNNRCRVFRAMMLEELPTLLLALSKMHEPWRDVLYIPFGISFILLRVLFHF--LFHTYIYTHYGPEMNPVDHGLLIASLSMHLYWAYGFIKSQIYPKQKKKSES 399
            V+GS+FY S+++LL+GW+HHI Y     + + N    VF  M   ELPT +LAL  +    R   Y+ F  +F++ R+LFH   +   ++   YGP +  +      A   +H +W YGFIK QI    K+K E+
Sbjct:   97 VVGSIFYRSKIELLTGWIHHITYLGTLTWAIHNQYTAVFIMMCSLELPTFILALGSVRSQLRRD-YV-FASTFLVTRILFHAYAIKCAWVMKPYGPVVTALS-----AFFPVHCFWFYGFIKQQIRLAAKRKQEA 224          
BLAST of mRNA_M-pyrifera_M_contig97528.22468.1 vs. uniprot
Match: A0A6T8NGL7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8NGL7_HEMAN)

HSP 1 Score: 80.9 bits (198), Expect = 2.120e-15
Identity = 44/124 (35.48%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    4 LGSLFYPSEVDLLSGWVHHIAYTIIAFYMLRNNRCRVFRAMMLEELPTLLLALSKMHEPWR-DVLYIPFGISFILLRVLFH-FLFHTYIYTHYGPEMNPVDHGLLIASLSMHLYWAYGFIKSQI 369
            +G  FYP+++ LL+ W+HH AYT++  +ML+     +F   +LEELPTL+LA+  MH+P R D L   FG+S+ +LRV  H  L +  +  + G +   V       +  +H+ W Y +++ Q+
Sbjct:  193 VGLCFYPTQLHLLTTWIHHTAYTLLCSWMLQRGVSILFALCLLEELPTLILAIGSMHKPLRSDSL---FGLSYFVLRVSLHTVLAYNAVTYNGGDDRIHVVRFNFALTWCLHVNWFYAWVRQQL 313          
BLAST of mRNA_M-pyrifera_M_contig97528.22468.1 vs. uniprot
Match: A0A261XUB3_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XUB3_9FUNG)

HSP 1 Score: 78.6 bits (192), Expect = 5.050e-15
Identity = 41/123 (33.33%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 VLGSLFYPSEVDLLSGWVHHIAYTIIAFYMLRNNRCRVFRAMMLEELPTLLLALSKMHEPWRDVLYIPFGISFILLRVLFHFLFHTYIYTHYGPEMNPVDHGLLIASLSMHLYWAYGFIKSQI 369
            VLG++FYP ++D+L+ W+HHI Y+I   ++++    ++F    + E P+ +LAL  +++ WR      F   FI  R++FH     Y +  Y P  N     +++ +L +HL+W Y FI  QI
Sbjct:  113 VLGAIFYPDKMDILTAWIHHILYSIALIWVIKMKYTQLFIFACIMEAPSFMLALGSLNKDWRSDRI--FAALFISTRLVFHGWLEWY-FALYHP--NKEVWKIMVTALPVHLFWFYKFILQQI 230          
BLAST of mRNA_M-pyrifera_M_contig97528.22468.1 vs. uniprot
Match: A0A8J5Y3D9_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y3D9_DIALT)

HSP 1 Score: 77.4 bits (189), Expect = 1.160e-14
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 1
Query:    7 GSLFYPSEVDLLSGWVHHIAYTIIAFYMLRNNRCRVFRAMMLEELPTLLLALSKMHEPWRDVLYIPFGISFILLRVLFHFLFHTYIYTHYGPEMNPVDHGLLIASLSMHLYWAYGFIKSQI 369
            G LFYP ++DLL+GWVHH  Y  + +Y+  ++    F   ++EELPT LLAL  +   WR      FG +F   R+ +H    +  +        P+   L+  +L++HL+W YGF   Q+
Sbjct:  100 GMLFYPKQIDLLTGWVHHSVYLWLMYYVHVHHIQGGFALFLVEELPTFLLALGNVSREWRT--NFAFGAAFFATRIAWHGWLLSKFWAARRTIAQPLW-PLVTLTLALHLHWFYGFTLQQM 217          
BLAST of mRNA_M-pyrifera_M_contig97528.22468.1 vs. uniprot
Match: A0A168GED2_MUCCL (TLC domain-containing protein n=2 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A168GED2_MUCCL)

HSP 1 Score: 76.3 bits (186), Expect = 3.590e-14
Identity = 41/123 (33.33%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    1 VLGSLFYPSEVDLLSGWVHHIAYTIIAFYMLRNNRCRVFRAMMLEELPTLLLALSKMHEPWRDVLYIPFGISFILLRVLFHFLFHTYIYTHYGPEMNPVDHGLLIASLSMHLYWAYGFIKSQI 369
            VLG ++YP  + L++GWVHH+ Y     + LR     +F    + ELPTL+LA   M   WR  L   FG +F +LR++ H      +  H+      +   + +    +H+YW YG I+ QI
Sbjct:  107 VLGCIYYPKRITLMTGWVHHLFYIFTLSWFLRLQISSLFTVTSILELPTLILAAGSMVHEWRSDLL--FGSTFFVLRLVAHAWMMVALKRHHRIHFMWI---VALVIYPLHMYWFYGIIQIQI 224          
BLAST of mRNA_M-pyrifera_M_contig97528.22468.1 vs. uniprot
Match: S2JDG5_MUCC1 (TLC domain-containing protein n=2 Tax=Mucor TaxID=4830 RepID=S2JDG5_MUCC1)

HSP 1 Score: 76.3 bits (186), Expect = 3.700e-14
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    1 VLGSLFYPSEVDLLSGWVHHIAYTIIAFYMLRNNRCRVFRAMMLEELPTLLLALSKMHEPWRDVLYIPFGISFILLRVLFHFLFHTYIYTHYGPEMNPVDHGLLIASLSMHLYWAYGFIKSQ 366
            VLGS++YP  + L++GWVHH+ Y     + LR     +F    + ELPTL+LA   M   WR  L   FG +F +LR++ H      +  H+      +   + +    +HLYW YG ++ Q
Sbjct:  109 VLGSVYYPKRITLMTGWVHHLFYIFTLSWFLRLQISSLFTVTSILELPTLILAAGSMVHEWRSDLL--FGSTFFVLRLVAHAWMMVALKRHHRIPFMWI---VALVIYPLHLYWFYGIVQIQ 225          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97528.22468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X2IF82_9FUNG2.010e-1840.65Uncharacterized protein n=1 Tax=Absidia repens Tax... [more]
A0A1X0S8G8_RHIZD1.010e-1738.10Uncharacterized protein n=2 Tax=Rhizopus TaxID=484... [more]
A0A2G4SUA5_RHIZD4.580e-1736.51Uncharacterized protein n=3 Tax=Rhizopus TaxID=484... [more]
A0A0G4EIY9_VITBC8.680e-1734.78Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A168H3Q2_MUCCL1.010e-1536.30Uncharacterized protein n=4 Tax=Mucor TaxID=4830 R... [more]
A0A6T8NGL7_HEMAN2.120e-1535.48Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A261XUB3_9FUNG5.050e-1533.33Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
A0A8J5Y3D9_DIALT1.160e-1434.71Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A168GED2_MUCCL3.590e-1433.33TLC domain-containing protein n=2 Tax=Mucor circin... [more]
S2JDG5_MUCC13.700e-1433.61TLC domain-containing protein n=2 Tax=Mucor TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97528contigM-pyrifera_M_contig97528:210..626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score79.7
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog81824.XP_001745102.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2DQYB@1,2S83H@2759,3A8VH@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.4738004-CDS-M-pyrifera_M_contig97528:209..6261622816892.4738004-CDS-M-pyrifera_M_contig97528:209..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97528 210..626 +
1692278240.1561246-CDS-M-pyrifera_M_contig97528:209..6261692278240.1561246-CDS-M-pyrifera_M_contig97528:209..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97528 210..626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97528.22468.1prot_M-pyrifera_M_contig97528.22468.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97528 210..626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97528.22468.1

>prot_M-pyrifera_M_contig97528.22468.1 ID=prot_M-pyrifera_M_contig97528.22468.1|Name=mRNA_M-pyrifera_M_contig97528.22468.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
VLGSLFYPSEVDLLSGWVHHIAYTIIAFYMLRNNRCRVFRAMMLEELPTL
LLALSKMHEPWRDVLYIPFGISFILLRVLFHFLFHTYIYTHYGPEMNPVD
HGLLIASLSMHLYWAYGFIKSQIYPKQKKKSESEKKQE*
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mRNA from alignment at M-pyrifera_M_contig97528:210..626+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97528.22468.1 ID=mRNA_M-pyrifera_M_contig97528.22468.1|Name=mRNA_M-pyrifera_M_contig97528.22468.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig97528:210..626+ (Macrocystis pyrifera P11B4 male)
GTTCTTGGTTCTCTGTTCTACCCGAGTGAGGTCGATTTGTTGAGTGGATG GGTGCATCACATTGCGTACACTATCATTGCCTTCTACATGTTGCGCAACA ATCGTTGCCGTGTGTTCCGTGCAATGATGCTGGAGGAATTGCCTACCTTG CTCCTAGCACTTTCGAAGATGCATGAACCATGGCGTGATGTGCTCTACAT TCCCTTTGGCATCTCCTTTATCCTCCTTCGTGTATTGTTTCATTTCCTCT TCCACACTTACATTTATACACATTATGGACCAGAAATGAACCCCGTCGAC CATGGTCTTCTTATTGCATCCCTCTCCATGCATCTCTACTGGGCCTATGG ATTCATCAAGTCACAAATCTATCCAAAACAGAAGAAGAAGAGTGAATCTG AAAAGAAGCAGGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97528:210..626+

>mRNA_M-pyrifera_M_contig97528.22468.1 ID=mRNA_M-pyrifera_M_contig97528.22468.1|Name=mRNA_M-pyrifera_M_contig97528.22468.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig97528:210..626+ (Macrocystis pyrifera P11B4 male)
GTTCTTGGTTCTCTGTTCTACCCGAGTGAGGTCGATTTGTTGAGTGGATG
GGTGCATCACATTGCGTACACTATCATTGCCTTCTACATGTTGCGCAACA
ATCGTTGCCGTGTGTTCCGTGCAATGATGCTGGAGGAATTGCCTACCTTG
CTCCTAGCACTTTCGAAGATGCATGAACCATGGCGTGATGTGCTCTACAT
TCCCTTTGGCATCTCCTTTATCCTCCTTCGTGTATTGTTTCATTTCCTCT
TCCACACTTACATTTATACACATTATGGACCAGAAATGAACCCCGTCGAC
CATGGTCTTCTTATTGCATCCCTCTCCATGCATCTCTACTGGGCCTATGG
ATTCATCAAGTCACAAATCTATCCAAAACAGAAGAAGAAGAGTGAATCTG
AAAAGAAGCAGGAATGAGTTCTTGGTTCTCTGTTCTACCCGAGTGAGGTC
GATTTGTTGAGTGGATGGGTGCATCACATTGCGTACACTATCATTGCCTT
CTACATGTTGCGCAACAATCGTTGCCGTGTGTTCCGTGCAATGATGCTGG
AGGAATTGCCTACCTTGCTCCTAGCACTTTCGAAGATGCATGAACCATGG
CGTGATGTGCTCTACATTCCCTTTGGCATCTCCTTTATCCTCCTTCGTGT
ATTGTTTCATTTCCTCTTCCACACTTACATTTATACACATTATGGACCAG
AAATGAACCCCGTCGACCATGGTCTTCTTATTGCATCCCTCTCCATGCAT
CTCTACTGGGCCTATGGATTCATCAAGTCACAAATCTATCCAAAACAGAA
GAAGAAGAGTGAATCTGAAAAGAAGCAGGAATGA
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