mRNA_M-pyrifera_M_contig9751.22460.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9751.22460.1
Unique NamemRNA_M-pyrifera_M_contig9751.22460.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9751.22460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9751contigM-pyrifera_M_contig9751:8293..8709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-00_007710.1
Exons1
Model size417
Cds size387
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.1063194-UTR-M-pyrifera_M_contig9751:8292..83221622816892.1063194-UTR-M-pyrifera_M_contig9751:8292..8322Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9751 8293..8322 +
1692278239.927614-UTR-M-pyrifera_M_contig9751:8292..83221692278239.927614-UTR-M-pyrifera_M_contig9751:8292..8322Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9751 8293..8322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.1177204-CDS-M-pyrifera_M_contig9751:8322..87091622816892.1177204-CDS-M-pyrifera_M_contig9751:8322..8709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9751 8323..8709 +
1692278239.9382627-CDS-M-pyrifera_M_contig9751:8322..87091692278239.9382627-CDS-M-pyrifera_M_contig9751:8322..8709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9751 8323..8709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9751.22460.1prot_M-pyrifera_M_contig9751.22460.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9751 8323..8709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9751.22460.1

>prot_M-pyrifera_M_contig9751.22460.1 ID=prot_M-pyrifera_M_contig9751.22460.1|Name=mRNA_M-pyrifera_M_contig9751.22460.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MVNVVSPRCVEDECEKGPCYGFEGRRASFCAKHKRDGMVNVVSPRCVETD
CLRGPSYGLPGDRRASFCAKHKQEGMVNVVSRKCSAPGCGKGPSFGLDGD
RKASFCAVHKSDDMVNISANSRFFARTG*
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mRNA from alignment at M-pyrifera_M_contig9751:8293..8709+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9751.22460.1 ID=mRNA_M-pyrifera_M_contig9751.22460.1|Name=mRNA_M-pyrifera_M_contig9751.22460.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig9751:8293..8709+ (Macrocystis pyrifera P11B4 male)
GTATTCTGCGCAGGGCACCGGCTTCACGGGATGGTCAACGTGGTGAGCCC
GCGCTGCGTGGAGGACGAATGCGAGAAGGGACCGTGCTATGGGTTCGAGG
GGCGGAGGGCGTCCTTCTGCGCCAAGCACAAGCGGGACGGCATGGTGAAC
GTCGTCAGCCCCCGCTGCGTGGAGACCGACTGCCTGCGCGGACCCAGCTA
CGGGTTGCCCGGAGACCGGAGGGCGAGCTTCTGCGCCAAGCACAAGCAGG
AGGGGATGGTGAACGTGGTCAGCCGGAAGTGCTCGGCCCCCGGCTGCGGG
AAAGGCCCGAGCTTCGGCCTGGATGGGGACCGGAAGGCGAGCTTTTGTGC
GGTGCACAAGAGTGATGACATGGTCAACATTTCGGCCAACTCGCGTTTCT
TCGCACGGACGGGATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9751:8293..8709+

>mRNA_M-pyrifera_M_contig9751.22460.1 ID=mRNA_M-pyrifera_M_contig9751.22460.1|Name=mRNA_M-pyrifera_M_contig9751.22460.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig9751:8293..8709+ (Macrocystis pyrifera P11B4 male)
ATGGTCAACGTGGTGAGCCCGCGCTGCGTGGAGGACGAATGCGAGAAGGG
ACCGTGCTATGGGTTCGAGGGGCGGAGGGCGTCCTTCTGCGCCAAGCACA
AGCGGGACGGCATGGTGAACGTCGTCAGCCCCCGCTGCGTGGAGACCGAC
TGCCTGCGCGGACCCAGCTACGGGTTGCCCGGAGACCGGAGGGCGAGCTT
CTGCGCCAAGCACAAGCAGGAGGGGATGGTGAACGTGGTCAGCCGGAAGT
GCTCGGCCCCCGGCTGCGGGAAAGGCCCGAGCTTCGGCCTGGATGGGGAC
CGGAAGGCGAGCTTTTGTGCGGTGCACAAGAGTGATGACATGGTCAACAT
TTCGGCCAACTCGCGTTTCTTCGCACGGACGGGATAGATGGTCAACGTGG
TGAGCCCGCGCTGCGTGGAGGACGAATGCGAGAAGGGACCGTGCTATGGG
TTCGAGGGGCGGAGGGCGTCCTTCTGCGCCAAGCACAAGCGGGACGGCAT
GGTGAACGTCGTCAGCCCCCGCTGCGTGGAGACCGACTGCCTGCGCGGAC
CCAGCTACGGGTTGCCCGGAGACCGGAGGGCGAGCTTCTGCGCCAAGCAC
AAGCAGGAGGGGATGGTGAACGTGGTCAGCCGGAAGTGCTCGGCCCCCGG
CTGCGGGAAAGGCCCGAGCTTCGGCCTGGATGGGGACCGGAAGGCGAGCT
TTTGTGCGGTGCACAAGAGTGATGACATGGTCAACATTTCGGCCAACTCG
CGTTTCTTCGCACGGACGGGATAG
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