mRNA_M-pyrifera_M_contig97507.22459.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97507.22459.1
Unique NamemRNA_M-pyrifera_M_contig97507.22459.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97507.22459.1 vs. uniprot
Match: A0A4P9ZQF4_9FUNG (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZQF4_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 1.110e-7
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   10 DLTVRIWDIQSATCLAVLRGHFEPVNGLAVPGLTLFSSSDDGTIRKWNL 156
            D  +RIW   +  CL VL GHF+ + GLAV   T++S+S DGT+RKW +
Sbjct:  233 DENIRIWSKATGKCLKVLVGHFDEITGLAVIDQTIYSTSLDGTLRKWQI 281          
BLAST of mRNA_M-pyrifera_M_contig97507.22459.1 vs. uniprot
Match: A0A4P9WIT2_9FUNG (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WIT2_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 4.800e-7
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 ASSDLTVRIWDIQSATCLAVLRGHFEPVNGLAVPGLTLFSSSDDGTIRKWNLSAVRLP 174
            AS+D ++R+WD+ S  C A+L+GH   V  + +   T+ S S D TIR+WNL+  RLP
Sbjct:   73 ASADRSIRVWDLSSQRCHALLQGHTGWVRTIQIMDRTVISGSGDHTIRQWNLN--RLP 128          
BLAST of mRNA_M-pyrifera_M_contig97507.22459.1 vs. uniprot
Match: A0A836H4P8_9TRYP (Guanine nucleotide-binding protein subunit beta-like protein n=1 Tax=Leishmania martiniquensis TaxID=1580590 RepID=A0A836H4P8_9TRYP)

HSP 1 Score: 54.3 bits (129), Expect = 6.550e-7
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    1 ASSDLTVRIWDIQSATCLAVLRGHFEPVNGLAVPGLTLFSSSDDGTIRKWNLSAVRLPL 177
            A  D+T+R+WD++S +CL VLRGH  P++ L V    ++S+   G I  W++ A R PL
Sbjct:  275 AGEDMTLRVWDMRSLSCLKVLRGHTAPISSLMVVESRVWSADKHGHILLWDI-ATRSPL 332          
BLAST of mRNA_M-pyrifera_M_contig97507.22459.1 vs. uniprot
Match: A0A7J6VCY7_THATH (Transducin beta-like protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VCY7_THATH)

HSP 1 Score: 51.6 bits (122), Expect = 1.130e-6
Identity = 27/60 (45.00%), Postives = 32/60 (53.33%), Query Frame = 1
Query:    4 SSDLTVRIWDIQSATCLAVLRGHFEPVNGLAVP--GLTLFSSSDDGTIRKWNLSAVRLPL 177
            S D TVR+WD+ S  CLAVL  HF  V  LAV   G TL S+  D  +  W+L      L
Sbjct:    5 SDDATVRVWDLVSKKCLAVLEKHFSTVTSLAVSENGWTLLSAGRDKIVNLWDLRNYEFKL 64          
BLAST of mRNA_M-pyrifera_M_contig97507.22459.1 vs. uniprot
Match: A0A453CWH6_AEGTS (Uncharacterized protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CWH6_AEGTS)

HSP 1 Score: 52.4 bits (124), Expect = 3.020e-6
Identity = 27/65 (41.54%), Postives = 37/65 (56.92%), Query Frame = 1
Query:    4 SSDLTVRIWDIQSATCLAVLRGHFEPVNGLAVP--GLTLFSSSDDGTIRKWNL----SAVRLPLY 180
            S D TVR+W+++S  C+AVL  HF  V  LA+   GLTL S+  D  +  W+L    S   +P Y
Sbjct:   35 SDDGTVRVWNLESKKCIAVLNAHFSTVTSLALSEDGLTLLSAGRDKVVNVWDLRKYASKKTIPAY 99          
BLAST of mRNA_M-pyrifera_M_contig97507.22459.1 vs. uniprot
Match: A0A446MP70_TRITD (Utp13 domain-containing protein n=2 Tax=Triticinae TaxID=1648030 RepID=A0A446MP70_TRITD)

HSP 1 Score: 52.4 bits (124), Expect = 3.100e-6
Identity = 27/65 (41.54%), Postives = 37/65 (56.92%), Query Frame = 1
Query:    4 SSDLTVRIWDIQSATCLAVLRGHFEPVNGLAVP--GLTLFSSSDDGTIRKWNL----SAVRLPLY 180
            S D TVR+W+++S  C+AVL  HF  V  LA+   GLTL S+  D  +  W+L    S   +P Y
Sbjct:   80 SDDGTVRVWNLESKKCIAVLNAHFSTVTSLALSEDGLTLLSAGRDKVVNVWDLRKYASKKTIPAY 144          
BLAST of mRNA_M-pyrifera_M_contig97507.22459.1 vs. uniprot
Match: M7ZTX0_TRIUA (Transducin beta-like protein 3 n=2 Tax=Triticum TaxID=4564 RepID=M7ZTX0_TRIUA)

HSP 1 Score: 52.0 bits (123), Expect = 4.240e-6
Identity = 27/65 (41.54%), Postives = 37/65 (56.92%), Query Frame = 1
Query:    4 SSDLTVRIWDIQSATCLAVLRGHFEPVNGLAVP--GLTLFSSSDDGTIRKWNL----SAVRLPLY 180
            S D TVR+W+++S  C+AVL  HF  V  LA+   GLTL S+  D  +  W+L    S   +P Y
Sbjct:   80 SDDGTVRVWNLESKKCIAVLNAHFSTVTSLALSEDGLTLLSAGRDKVVNVWDLRKYASKKTVPAY 144          
BLAST of mRNA_M-pyrifera_M_contig97507.22459.1 vs. uniprot
Match: A9TRZ2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TRZ2_PHYPA)

HSP 1 Score: 52.0 bits (123), Expect = 4.270e-6
Identity = 27/67 (40.30%), Postives = 36/67 (53.73%), Query Frame = 1
Query:    4 SSDLTVRIWDIQSATCLAVLRGHFEPVNGLAVP--GLTLFSSSDDGTIRKWNLS----AVRLPLYSA 186
            S D TVR+WD+ + TC A+L  HF  V  L V   G TL S+  D  +  WNL      + +P+Y A
Sbjct:  166 SDDGTVRVWDLVTKTCAAILNKHFSAVTSLDVSRNGWTLVSAGRDKVVNVWNLRDYSLQIAVPIYEA 232          
BLAST of mRNA_M-pyrifera_M_contig97507.22459.1 vs. uniprot
Match: A0A4P9Y1L7_9FUNG (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y1L7_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 5.660e-6
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    1 ASSDLTVRIWDIQSATCLAVLRGHFEPVNGLAVPGLT---LFSSSDDGTIRKWNLS 159
            ASSD T+R+WD++S  CL VL GH   +  L VPG+    L+S S D  + +W+L+
Sbjct:  197 ASSDRTIRVWDVESGVCLRVLEGHLTTIYAL-VPGMDGSDLWSGSADKDVLQWDLT 251          
BLAST of mRNA_M-pyrifera_M_contig97507.22459.1 vs. uniprot
Match: A0A177WP13_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WP13_BATDL)

HSP 1 Score: 51.6 bits (122), Expect = 5.810e-6
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    4 SSDLTVRIWDIQSATCLAVLRGHFEPVNGLAVPGLTLFSSSDDGTIRKWNLS 159
            S+D TVR+WD+ +  C AVL GH   +  + V G T+ S S D T+R+W ++
Sbjct:  316 SADKTVRVWDLTTYGCAAVLTGHTGWIRAVQVRGTTVISGSSDHTLRQWKVN 367          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97507.22459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P9ZQF4_9FUNG1.110e-748.98WD40-repeat-containing domain protein (Fragment) n... [more]
A0A4P9WIT2_9FUNG4.800e-744.83WD40-repeat-containing domain protein (Fragment) n... [more]
A0A836H4P8_9TRYP6.550e-742.37Guanine nucleotide-binding protein subunit beta-li... [more]
A0A7J6VCY7_THATH1.130e-645.00Transducin beta-like protein n=1 Tax=Thalictrum th... [more]
A0A453CWH6_AEGTS3.020e-641.54Uncharacterized protein n=3 Tax=Aegilops tauschii ... [more]
A0A446MP70_TRITD3.100e-641.54Utp13 domain-containing protein n=2 Tax=Triticinae... [more]
M7ZTX0_TRIUA4.240e-641.54Transducin beta-like protein 3 n=2 Tax=Triticum Ta... [more]
A9TRZ2_PHYPA4.270e-640.30Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A4P9Y1L7_9FUNG5.660e-644.64WD40-repeat-containing domain protein (Fragment) n... [more]
A0A177WP13_BATDL5.810e-642.31Uncharacterized protein n=1 Tax=Batrachochytrium d... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97507contigM-pyrifera_M_contig97507:2..199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.072826-CDS-M-pyrifera_M_contig97507:1..1991622816892.072826-CDS-M-pyrifera_M_contig97507:1..199Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97507 2..199 +
1692278239.9172974-CDS-M-pyrifera_M_contig97507:1..1991692278239.9172974-CDS-M-pyrifera_M_contig97507:1..199Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97507 2..199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97507.22459.1prot_M-pyrifera_M_contig97507.22459.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97507 2..199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97507.22459.1

>prot_M-pyrifera_M_contig97507.22459.1 ID=prot_M-pyrifera_M_contig97507.22459.1|Name=mRNA_M-pyrifera_M_contig97507.22459.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
ASSDLTVRIWDIQSATCLAVLRGHFEPVNGLAVPGLTLFSSSDDGTIRKW
NLSAVRLPLYSARWL*
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mRNA from alignment at M-pyrifera_M_contig97507:2..199+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97507.22459.1 ID=mRNA_M-pyrifera_M_contig97507.22459.1|Name=mRNA_M-pyrifera_M_contig97507.22459.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig97507:2..199+ (Macrocystis pyrifera P11B4 male)
GCTAGCAGTGATCTGACTGTGAGGATTTGGGACATCCAGTCTGCAACGTG CCTGGCCGTGCTGCGAGGCCACTTCGAGCCCGTCAACGGCCTGGCGGTGC CCGGCTTGACTCTCTTTTCGTCCTCCGATGACGGCACGATCAGGAAGTGG AACTTGTCTGCAGTACGTCTCCCTCTTTACAGCGCTCGCTGGCTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97507:2..199+

>mRNA_M-pyrifera_M_contig97507.22459.1 ID=mRNA_M-pyrifera_M_contig97507.22459.1|Name=mRNA_M-pyrifera_M_contig97507.22459.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig97507:2..199+ (Macrocystis pyrifera P11B4 male)
GCTAGCAGTGATCTGACTGTGAGGATTTGGGACATCCAGTCTGCAACGTG
CCTGGCCGTGCTGCGAGGCCACTTCGAGCCCGTCAACGGCCTGGCGGTGC
CCGGCTTGACTCTCTTTTCGTCCTCCGATGACGGCACGATCAGGAAGTGG
AACTTGTCTGCAGTACGTCTCCCTCTTTACAGCGCTCGCTGGCTGTGAGC
TAGCAGTGATCTGACTGTGAGGATTTGGGACATCCAGTCTGCAACGTGCC
TGGCCGTGCTGCGAGGCCACTTCGAGCCCGTCAACGGCCTGGCGGTGCCC
GGCTTGACTCTCTTTTCGTCCTCCGATGACGGCACGATCAGGAAGTGGAA
CTTGTCTGCAGTACGTCTCCCTCTTTACAGCGCTCGCTGGCTGTGA
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