mRNA_M-pyrifera_M_contig110666.2245.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110666.2245.1
Unique NamemRNA_M-pyrifera_M_contig110666.2245.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig110666.2245.1 vs. uniprot
Match: A0A7S2MSY2_9DINO (Transmembrane 9 superfamily member n=2 Tax=Alexandrium TaxID=2924 RepID=A0A7S2MSY2_9DINO)

HSP 1 Score: 106 bits (265), Expect = 1.530e-24
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:   73 AAVMYLPGVAPVEYQEGQRVPIWVNKVLSAKTQIPYRYNSLPVCQPKHATKETENLGEILVGDRIESSDYVVRMKEDKYCSVLCRRVLT 339
            A+  YLPGVAP+EY EG +V + VNK+ S KTQ+PYRY +LP C P    +  ENLGEIL GD+IE+S YVVRM +++ C VLC++ L+
Sbjct:   18 ASAFYLPGVAPIEYLEGGQVDLKVNKLTSVKTQLPYRYYTLPYCVPSVVQESAENLGEILEGDQIENSPYVVRMLQNESCKVLCKKALS 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig110666.2245.1 vs. uniprot
Match: A0A7S2BHR4_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHR4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.300e-24
Identity = 50/97 (51.55%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:   40 VLLVAAYVEYVAAVMYLPGVAPVEYQEGQRVPIWVNKVLSAKTQIPYRYNSLPVCQPKHATKETENLGEILVGDRIESSDYVVRMKEDKYCSVLCRR 330
            VLL A  V    A  YLPGVAP  Y+   +VP++VNKV S KTQ+PY Y  LP C PK   + +ENLGE+L GD I+SS Y + MK    C +LCR+
Sbjct:    5 VLLAAVLVPLAEAAFYLPGVAPKSYKTRDQVPLFVNKVTSTKTQLPYAYYDLPFCMPKRPKEASENLGEVLEGDMIKSSLYEIEMKVPDACKILCRK 101
[Close]
BLAST of mRNA_M-pyrifera_M_contig110666.2245.1 vs. uniprot
Match: A0A446UJT8_TRITD (Transmembrane 9 superfamily member n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446UJT8_TRITD)

HSP 1 Score: 100 bits (250), Expect = 2.350e-24
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = 1 
Query:    4 ASLTIMRLGLVCVLLVAAYVEYVAAVMYLPGVAPVEYQEGQRVPIWVNKVLSAKTQIPYRYNSLPVCQPKHATKETENLGEILVGDRIESSDYVVRMKEDKYCSVLCRRVLT 339
            A L +   G+  V L+AA     AA  YLPGVAP ++ +G  + + VNK+ S KTQ+PY Y SLP C+P      +ENLGE+L GDRIE+S YV +M+E K C ++C+  +T
Sbjct:    5 AMLRLAAAGIALVALLAAAPP--AAAFYLPGVAPTDFAKGDELLVKVNKLTSIKTQLPYTYYSLPFCKPNTIVDSSENLGEVLRGDRIENSPYVFQMREPKMCQIICKITVT 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig110666.2245.1 vs. uniprot
Match: A0A7S3RYC6_9SPIT (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RYC6_9SPIT)

HSP 1 Score: 97.8 bits (242), Expect = 2.820e-24
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:   85 YLPGVAPVEYQEGQRVPIWVNKVLSAKTQIPYRYNSLPVCQPKHATKETENLGEILVGDRIESSDYVVRMKEDKYCSVLCRRVL 336
            YLPGVAP E+ +G RV + VNK+ S KTQ+PYRY  LP CQP       ENLGEIL+GD IE+S Y +RM  +  CS +C R L
Sbjct:   14 YLPGVAPQEFAQGDRVDLKVNKLTSVKTQLPYRYYVLPYCQPSELHVSAENLGEILLGDSIENSMYDIRMNVNASCSFMCERTL 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig110666.2245.1 vs. uniprot
Match: Q5ENL8_HETTR (Transmembrane 9 superfamily member (Fragment) n=3 Tax=Alveolata TaxID=33630 RepID=Q5ENL8_HETTR)

HSP 1 Score: 100 bits (249), Expect = 3.650e-24
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:   43 LLVAAYVEYVAAVMYLPGVAPVEYQEGQRVPIWVNKVLSAKTQIPYRYNSLPVCQPKHATKET-ENLGEILVGDRIESSDYVVRMKEDKYCSVLCRRVLT 339
            L +A+ V   A   YLPGVAP+EYQ+G RV + VNK+ S KTQ+PY Y SLP C+P    +++ ENLGEIL GD IE+S Y + M+ ++ C VLC + LT
Sbjct:    6 LAIASAVSAPALGFYLPGVAPIEYQDGNRVDLKVNKLTSVKTQLPYAYYSLPYCKPNEGIQDSVENLGEILEGDLIENSPYEIFMRVNETCKVLCNQNLT 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig110666.2245.1 vs. uniprot
Match: A0A813JG54_POLGL (Transmembrane 9 superfamily member n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JG54_POLGL)

HSP 1 Score: 105 bits (262), Expect = 3.940e-24
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   85 YLPGVAPVEYQEGQRVPIWVNKVLSAKTQIPYRYNSLPVCQPKHATKETENLGEILVGDRIESSDYVVRMKEDKYCSVLCRRVLT 339
            YLPGVAP+EYQ+G RV + VNK+ S KTQ+PY Y +LP C+PK      ENLGEIL GD IE+S Y +RM+E+  C +LC++ LT
Sbjct:   30 YLPGVAPIEYQDGARVELKVNKLTSVKTQLPYGYYTLPYCRPKVIQDSVENLGEILEGDLIENSPYDIRMRENVICKILCKQKLT 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig110666.2245.1 vs. uniprot
Match: A0A6J0MGV8_RAPSA (Transmembrane 9 superfamily member n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0MGV8_RAPSA)

HSP 1 Score: 104 bits (260), Expect = 7.400e-24
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:   67 YVAAVMYLPGVAPVEYQEGQRVPIWVNKVLSAKTQIPYRYNSLPVCQPKHATKETENLGEILVGDRIESSDYVVRMKEDKYCSVLCRRVL 336
            +VA   YLPGVAP ++++G  + + VNK+ S KTQ+PY Y SLP CQPK     TENLGE+L GDRIE++ Y  +M+E K C+VLCR VL
Sbjct:   19 HVAHSFYLPGVAPQDFEKGDELKVKVNKLSSIKTQLPYSYYSLPFCQPKKIVDSTENLGEVLRGDRIENAPYSFKMREAKMCNVLCRVVL 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig110666.2245.1 vs. uniprot
Match: M4EIE8_BRARP (Transmembrane 9 superfamily member n=1 Tax=Brassica rapa subsp. pekinensis TaxID=51351 RepID=M4EIE8_BRARP)

HSP 1 Score: 103 bits (257), Expect = 1.880e-23
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:   67 YVAAVMYLPGVAPVEYQEGQRVPIWVNKVLSAKTQIPYRYNSLPVCQPKHATKETENLGEILVGDRIESSDYVVRMKEDKYCSVLCRRVL 336
            +VA   YLPGVAP ++++G  + + VNK+ S KTQ+PY Y SLP CQPK     TENLGE+L GDRIE++ Y  +M+E K C+VLCR  L
Sbjct:   19 HVAHSFYLPGVAPQDFEKGDELKVKVNKLTSIKTQLPYSYYSLPFCQPKKIVDSTENLGEVLRGDRIENAPYSFKMREAKMCNVLCRVTL 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig110666.2245.1 vs. uniprot
Match: A0A0D3AIH6_BRAOL (Transmembrane 9 superfamily member n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3AIH6_BRAOL)

HSP 1 Score: 103 bits (257), Expect = 1.890e-23
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:   67 YVAAVMYLPGVAPVEYQEGQRVPIWVNKVLSAKTQIPYRYNSLPVCQPKHATKETENLGEILVGDRIESSDYVVRMKEDKYCSVLCRRVL 336
            +VA   YLPGVAP ++++G  + + VNK+ S KTQ+PY Y SLP CQPK     TENLGE+L GDRIE++ Y  +M+E K C+VLCR  L
Sbjct:   19 HVAHSFYLPGVAPQDFEKGDELKVKVNKLTSIKTQLPYSYYSLPFCQPKKIVDSTENLGEVLRGDRIENAPYSFKMREAKMCNVLCRVTL 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig110666.2245.1 vs. uniprot
Match: UPI0006A704EF (transmembrane 9 superfamily member 8 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A704EF)

HSP 1 Score: 103 bits (257), Expect = 1.890e-23
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:   67 YVAAVMYLPGVAPVEYQEGQRVPIWVNKVLSAKTQIPYRYNSLPVCQPKHATKETENLGEILVGDRIESSDYVVRMKEDKYCSVLCRRVL 336
            +VA   YLPGVAP ++++G  + + VNK+ S KTQ+PY Y SLP CQPK     TENLGE+L GDRIE++ Y  +M+E K C+VLCR  L
Sbjct:   20 HVAHSFYLPGVAPQDFEKGDELKVKVNKLTSIKTQLPYSYYSLPFCQPKKIVDSTENLGEVLRGDRIENAPYSFKMREAKMCNVLCRVTL 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110666.2245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2MSY2_9DINO1.530e-2456.18Transmembrane 9 superfamily member n=2 Tax=Alexand... [more]
A0A7S2BHR4_9STRA2.300e-2451.55Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
A0A446UJT8_TRITD2.350e-2446.43Transmembrane 9 superfamily member n=1 Tax=Triticu... [more]
A0A7S3RYC6_9SPIT2.820e-2455.95Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
Q5ENL8_HETTR3.650e-2452.00Transmembrane 9 superfamily member (Fragment) n=3 ... [more]
A0A813JG54_POLGL3.940e-2457.65Transmembrane 9 superfamily member n=3 Tax=Polarel... [more]
A0A6J0MGV8_RAPSA7.400e-2455.56Transmembrane 9 superfamily member n=2 Tax=Raphanu... [more]
M4EIE8_BRARP1.880e-2354.44Transmembrane 9 superfamily member n=1 Tax=Brassic... [more]
A0A0D3AIH6_BRAOL1.890e-2354.44Transmembrane 9 superfamily member n=1 Tax=Brassic... [more]
UPI0006A704EF1.890e-2354.44transmembrane 9 superfamily member 8 n=1 Tax=Brass... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110666contigM-pyrifera_M_contig110666:30..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score105.9
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog29730.Gorai.009G056900.1
KEGG koko:K17086
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0031224,GO:0031410,GO:0031982,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0048518,GO:0050789,GO:0051049,GO:0051050,GO:0051222,GO:0051223,GO:0060341,GO:0065007,GO:0070201,GO:0070861,GO:0070863,GO:0090087,GO:0090316,GO:0097708,GO:1903827,GO:1903829,GO:1904951,GO:2000008,GO:2000010
EggNOG free text desc.Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family
EggNOG OGs37HDR@33090,3GB1I@35493,KOG1278@1,KOG1278@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons2
Model size339
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110666.2245.1prot_M-pyrifera_M_contig110666.2245.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110666 48..580 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.6554406-UTR-M-pyrifera_M_contig110666:29..471622815618.6554406-UTR-M-pyrifera_M_contig110666:29..47Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110666 30..47 +
1692277490.1813252-UTR-M-pyrifera_M_contig110666:29..471692277490.1813252-UTR-M-pyrifera_M_contig110666:29..47Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110666 30..47 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.6764688-CDS-M-pyrifera_M_contig110666:47..1581622815618.6764688-CDS-M-pyrifera_M_contig110666:47..158Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110666 48..158 +
1692277490.1918628-CDS-M-pyrifera_M_contig110666:47..1581692277490.1918628-CDS-M-pyrifera_M_contig110666:47..158Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110666 48..158 +
1622815618.6881466-CDS-M-pyrifera_M_contig110666:370..5801622815618.6881466-CDS-M-pyrifera_M_contig110666:370..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110666 371..580 +
1692277490.2011333-CDS-M-pyrifera_M_contig110666:370..5801692277490.2011333-CDS-M-pyrifera_M_contig110666:370..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110666 371..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110666.2245.1

>prot_M-pyrifera_M_contig110666.2245.1 ID=prot_M-pyrifera_M_contig110666.2245.1|Name=mRNA_M-pyrifera_M_contig110666.2245.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MRLGLVCVLLVAAYVEYVAAVMYLPGVAPVEYQEGQRVPIWVNKVLSAKT
QIPYRYNSLPVCQPKHATKETENLGEILVGDRIESSDYVVRMKEDKYCSV
LCRRVLT
back to top

mRNA from alignment at M-pyrifera_M_contig110666:30..580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110666.2245.1 ID=mRNA_M-pyrifera_M_contig110666.2245.1|Name=mRNA_M-pyrifera_M_contig110666.2245.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=551bp|location=Sequence derived from alignment at M-pyrifera_M_contig110666:30..580+ (Macrocystis pyrifera P11B4 male)
TTGGCTTCTTTGACGATAATGCGGTTGGGGTTGGTGTGTGTGCTTCTTGT
TGCAGCATATGTTGAGTATGTTGCAGCTGTGATGTACTTACCAGGTGTCG
CGCCCGTAGAATACCAAGAAGGCCAACGAGTACGTTGCACCGCACCCCAC
ACACCTTATTCGCAACAGATACACTTGTTTTCACAATTACACACTGTGTT
TAGTGGGAATGAGAGGAAATTGGGGTGGAGATGTGATGGTTTATGTGGAG
AAACGGACGCACGTTTGAGTCTTGCCTTGTTTTGTTCCCATTTTTCACAT
GTACCCGTCACCAAACCCCCCGAATCCTCTTTTCTTTACAGGTTCCGATT
TGGGTGAACAAGGTTTTGTCTGCAAAGACGCAAATTCCGTATCGTTACAA
CTCACTCCCAGTTTGCCAGCCAAAACACGCGACAAAGGAGACGGAAAACC
TTGGTGAGATTCTAGTTGGTGATCGCATTGAATCGTCTGATTATGTGGTT
CGGATGAAGGAAGACAAATACTGCTCTGTGCTTTGTAGAAGAGTCCTTAC
A
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110666:30..580+

>mRNA_M-pyrifera_M_contig110666.2245.1 ID=mRNA_M-pyrifera_M_contig110666.2245.1|Name=mRNA_M-pyrifera_M_contig110666.2245.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig110666:30..580+ (Macrocystis pyrifera P11B4 male)
ATGCGGTTGGGGTTGGTGTGTGTGCTTCTTGTTGCAGCATATGTTGAGTA
TGTTGCAGCTGTGATGTACTTACCAGGTGTCGCGCCCGTAGAATACCAAG
AAGGCCAACGAATGCGGTTGGGGTTGGTGTGTGTGCTTCTTGTTGCAGCA
TATGTTGAGTATGTTGCAGCTGTGATGTACTTACCAGGTGTCGCGCCCGT
AGAATACCAAGAAGGCCAACGAGTTCCGATTTGGGTGAACAAGGTTTTGT
CTGCAAAGACGCAAATTCCGTATCGTTACAACTCACTCCCAGTTTGCCAG
CCAAAACACGCGACAAAGGAGACGGAAAACCTTGGTGAGATTCTAGTTGG
TGATCGCATTGAATCGTCTGATTATGTGGTTCGGATGAAGGAAGACAAAT
ACTGCTCTGTGCTTTGTAGAAGAGTCCTTACAGTTCCGATTTGGGTGAAC
AAGGTTTTGTCTGCAAAGACGCAAATTCCGTATCGTTACAACTCACTCCC
AGTTTGCCAGCCAAAACACGCGACAAAGGAGACGGAAAACCTTGGTGAGA
TTCTAGTTGGTGATCGCATTGAATCGTCTGATTATGTGGTTCGGATGAAG
GAAGACAAATACTGCTCTGTGCTTTGTAGAAGAGTCCTTACA
back to top