mRNA_M-pyrifera_M_contig110657.2242.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110657.2242.1
Unique NamemRNA_M-pyrifera_M_contig110657.2242.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110657.2242.1 vs. uniprot
Match: A0A812YNW8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YNW8_9DINO)

HSP 1 Score: 115 bits (288), Expect = 2.450e-26
Identity = 57/112 (50.89%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 NLPVGSREDPKRRFDSAGRLVPYTNAMYLQDLQTDPRQTSNPWLFLYRDFERHSAGYRVVVMILKLLLIIPVIVLKDHVIAQVSTTLVLLGIFSILSWWFAPFINDQADLMD 336
            N PVGSREDP  R+D  G LV YT+AMY +D+QTDPRQ S+P+LFLY  +ER  A Y+V+VM++KL+L + V++L D V+ Q + +L +L I  + ++  +PF+N QAD+M+
Sbjct:  682 NKPVGSREDPNSRYDETGELVEYTDAMYEEDMQTDPRQLSSPYLFLYDSYERKWAFYKVLVMLVKLILALLVVLLFDKVLLQTALSLGVLVIMVVFAFIASPFLNAQADVME 793          
BLAST of mRNA_M-pyrifera_M_contig110657.2242.1 vs. uniprot
Match: A0A329RHP0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RHP0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.750e-17
Identity = 61/203 (30.05%), Postives = 104/203 (51.23%), Query Frame = 1
Query:    1 NLPVGSREDPKRRFDSAGRLVPYTNAMYLQDLQTDPRQTSNPWLFLYRDFERHSAGYRVVVMILKLLLIIPVIVLK--DHVIAQVSTTLVLLGIFSILSWWFAPFINDQADLMDLSGRITCLTT----ALFGFLGSDQVVANGAVPFAIVINIVXXXXXXXXXXXXXXSLKAVRSFLKNLSGQFSFSDTARMTEGRP-QTIIP 588
            N P GS EDP    D  G +VP+ + +Y + +  DP Q   P+  LY  FE+  + Y+V+ +++KL L + +++    D  I  + +  + + + +I S+   PF +   ++M++SG+IT LTT    AL  F+   Q  +      A ++++V               +K  R FLKNL G  +FSDT+R  E  P + ++P
Sbjct:  529 NRPTGSLEDPLVTHDLDGEIVPFDDKVYARLVARDPSQLRCPYRSLYAGFEQKWSYYKVLQLLVKLALALVIVLAATADDRIRGILSCAIYVTVVAISSYG-TPFSDPLNNVMEISGKITALTTCVGGALAAFIDMKQAKSKPLELVAAIVSVVHIVNFFVMLVVLLLGMKGARLFLKNLLGWITFSDTSRGLEDAPAKNVLP 730          
BLAST of mRNA_M-pyrifera_M_contig110657.2242.1 vs. uniprot
Match: A0A2P4WZW8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WZW8_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.340e-13
Identity = 50/199 (25.13%), Postives = 97/199 (48.74%), Query Frame = 1
Query:    1 NLPVGSREDPKRRFDSAGRLVPYTNAMYLQDLQTDPRQTSNPWLFLYRDFERHSAGYRVVVMILKLLLIIPVIVL-KDHVIAQVSTTLVLLGIFSILSWWFAPFINDQADLMDLSGRITCLTTALFGFLG-SDQVVANGAVPFAIVINIVXXXXXXXXXXXXXXSLKAVRSFLKNLSGQFSFSDTARMTEGRP-QTIIP 588
            N P GS E+ K  +D  G  VP+ + +Y + +Q DP Q   P+  LY  FE+  + ++V+ +++KL+L + +++   D ++ +             LS +  PF +   ++M++SG++T LTT + G +  S  +    +    +V  +                +   R ++KN+ G  +FSDT R  +  P + ++P
Sbjct:  537 NRPTGSLENSKITYDLDGEEVPFDDKVYERLVQRDPNQLRCPYRSLYAGFEQRWSYFKVLQLLVKLVLALVIVITPSDDMVLRAIILCAFYACVVALSSYSTPFTDPLNNVMEISGKVTALTTCIGGLVAVSSDIQKTKSRTLEVVAIVYCAHCQFFHHASLLLRMPNARLWVKNVLGWITFSDTCRGIDDAPAKDVLP 735          
BLAST of mRNA_M-pyrifera_M_contig110657.2242.1 vs. uniprot
Match: A0A7S0XXN8_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XXN8_HEMAN)

HSP 1 Score: 71.2 bits (173), Expect = 3.100e-11
Identity = 47/129 (36.43%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   52 GRLVPYTNAMYLQDLQTDPRQTSNPWLFLYRDFERHSAGYRVVVMILKLLLIIPVIVLKDHVIAQVSTTLVLLGIFSILSWWFAPFINDQADLMDLSGRITCLTTALFGFLGSDQVVANG-AVPFAIVI 435
            G  VPYT+AMY  DL  D  Q SNP+ FL++ +ER  A Y+  VM++KL+  + +++L    +    T L +  IFS +S+   PFI    DLMD+  R++   T +   +    +V  G A P   VI
Sbjct:    2 GNRVPYTDAMYKDDLLRDKYQ-SNPFTFLFQGYERRFALYKEFVMLVKLITSMLLVILVHRQVVVAITVLAINVIFSGVSFATRPFIESTDDLMDMCARVSVSLTLVLALVSMPDLVDLGDARPVVSVI 129          
BLAST of mRNA_M-pyrifera_M_contig110657.2242.1 vs. uniprot
Match: A0A1J4KFH9_9EUKA (Uncharacterized protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KFH9_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 1.010e-10
Identity = 43/140 (30.71%), Postives = 74/140 (52.86%), Query Frame = 1
Query:   34 RRFDSAGRLVPYTN------AMYLQDLQTDPRQTSNPWLFLYRDFERHSAGYRVVVMILKLLLIIPVIVLKDHVIAQVSTTLVLLGIFSILSWWFAPFINDQADLMDLSGRITCLTTALFGFLGSDQVVANGAVPFAIVI 435
            +RFD+ GR +  +         Y + LQTD      P+ FLY  +E   + Y+V++M++K+LL+IP I      +  VS + +++ I+ +LS    PF+ND  D +D+S R+T L T +   L    V+      F +++
Sbjct:  242 QRFDAQGRRIDVSKNKEQYYEQYRELLQTD----QCPYNFLYAGYEYGWSAYKVIIMVVKVLLVIPCIPFIHSELLSVSLSTMIVFIYCLLSTIMRPFLNDSDDWLDISARVTSLLTLIMQILVLTGVIEGTFASFTLLV 377          
BLAST of mRNA_M-pyrifera_M_contig110657.2242.1 vs. uniprot
Match: A0A8J5M1V7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M1V7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.800e-10
Identity = 55/199 (27.64%), Postives = 95/199 (47.74%), Query Frame = 1
Query:    1 NLPVGSREDPKRRFDSAGRLVPYTNAMYLQDLQTDPRQTSNPWLFLYRDFERHSAGYRVVVMILKLLLIIPVIVLK--DHVIAQVSTTLVLLGIFSILSWWFAPFINDQADLMDLSGRITCLTTALFGFLGSDQVVANGAVPFAIVINIVXXXXXXXXXXXXXXSLKAVRSFLKNLSGQFSFSDTARMTEGRP-QTIIP 588
            N P GS EDP    D   ++       Y + +  DP Q   P+  LY  FE+  + Y+V+ +++KL L + +++    D  I  + +  + + + +I S+   PF +   ++M++SG+IT LTT + G L +        +      ++V               +K  R FLKNL G  +FSDT+R  E  P + ++P
Sbjct:   57 NRPTGSLEDPLVTHDLDDKV-------YARLVARDPSQLRCPYRSLYAGFEQKWSYYKVLQLLVKLALALVIVLAATADDRIRGILSCAIYVTVVAISSYG-TPFSDPFNNVMEISGKITALTTCVGGALAA-------FIDMKQAKSVVHIVNFFVMLVVLLLGMKGARLFLKNLLGWITFSDTSRGLEDAPAKNVLP 240          
BLAST of mRNA_M-pyrifera_M_contig110657.2242.1 vs. uniprot
Match: A0A0H5RAG9_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RAG9_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 1.090e-9
Identity = 51/185 (27.57%), Postives = 86/185 (46.49%), Query Frame = 1
Query:   40 FDSAGRLVP--YTNAMYLQDLQTDPRQTSNPWLFLYRDFERHSAGYRVVVMILKLLLIIPVIVL---------------KDHVIAQVSTTLVLLGIFSILSWWFAPFINDQADLMDLSGRITCLTTALFGFLGSDQVVANGAVPFAIVINIVXXXXXXXXXXXXXXSLKAVRSFLKNLSGQFSFS 543
            +D  G L    YT+A Y  DL+++     +P+  LY  +ER  A ++VVVM++KLL+++P+ ++                  +++Q   T+ +L +++I  W   PF+N   D++D   R+T L  +L G L S      G+  F    NI+               +   RS  KN   Q SF+
Sbjct:  224 YDKEGLLREGGYTDANYRDDLKSN----LSPFKGLYEPYERRWAYHKVVVMVMKLLIVLPMAIMVASNRVGSNLGSSGVSGLLLSQALATIAVLSVYAIWCWSTRPFLNSTDDVLDGVSRLTILIISLIGLLSSQT--DAGSKIFGAFANILAGISSLAAAVMIISGIPKFRSAFKNFREQASFT 402          
BLAST of mRNA_M-pyrifera_M_contig110657.2242.1 vs. uniprot
Match: A0A1J4JLH5_9EUKA (Uncharacterized protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4JLH5_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 3.920e-9
Identity = 47/139 (33.81%), Postives = 80/139 (57.55%), Query Frame = 1
Query:   31 KRRFDSAGRLVPYTNAMYLQDLQTDPRQTSNPWLFLYRDFERHSAGYRVVVMILKLLLIIPVIVLKDHVIAQVSTTLVLLGIFSILSWWFAPFINDQADLMDLSGRITCLTTALFGFLGSDQVVANGAVPFAIV-INIV 444
            K  FD    L+ Y   M L+      R T  P+ FLY+ +E   + Y+VV +++K+LL+IPV  L    IA VS +LV++ +++++S    PFI DQ D +D++ R+T + T +   L + +V+ +    + +V INI+
Sbjct:  247 KEGFDREKMLIQYR--MLLE------RDTC-PYKFLYQGYEYGRSVYKVVTLVVKMLLVIPVNPLVTSGIASVSMSLVIVFVYAVMSTIMKPFILDQDDWIDIAARVTAVLTLIVQILIACKVIDDIISGYILVAINII 376          
BLAST of mRNA_M-pyrifera_M_contig110657.2242.1 vs. uniprot
Match: A2DN42_TRIVA (Uncharacterized protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2DN42_TRIVA)

HSP 1 Score: 65.1 bits (157), Expect = 7.180e-9
Identity = 46/183 (25.14%), Postives = 90/183 (49.18%), Query Frame = 1
Query:    4 LPVGSREDPKRRFDSAGRL--VPYTNAMYLQDLQTDPRQTSNPWLFLYRDFERHSAGYRVVVMILKLLLIIPVIVLKDHVIAQVSTTLVLLGIFSILSWWFAPFINDQADLMDLSGRITCLTTALFGFLGSDQVVANGAVPF-AIVINIVXXXXXXXXXXXXXXSLKAVRSFLKNLSGQFSFS 543
            L +   +   +++D++G +  + Y    YL+  +        P+ FLY  +E   + Y+V+ M++K+LLIIP+I L    +A    +L ++ ++++ S   +PFI  Q D +DLS RIT + T +        V+     P+ ++ +++V              +L+ V+ F +   G+  FS
Sbjct:  217 LTINKYQPKPQKYDASGEIFDLSYDKDKYLEQYKELVAADKCPYNFLYSGYEYGWSAYKVITMVVKMLLIIPLIPLFTAALAPACVSLAIVTVYALCSIISSPFILPQDDWIDLSARITAVCTIVLQICVIKDVLYP---PWDSLALSVVNFANLGIMIIIFLSNLQFVKVFFRKKFGKLKFS 396          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110657.2242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A812YNW8_9DINO2.450e-2650.89Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A329RHP0_9STRA1.750e-1730.05Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A2P4WZW8_9STRA4.340e-1325.13Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A7S0XXN8_HEMAN3.100e-1136.43Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A1J4KFH9_9EUKA1.010e-1030.71Uncharacterized protein n=1 Tax=Tritrichomonas foe... [more]
A0A8J5M1V7_9STRA7.800e-1027.64Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A0H5RAG9_9EUKA1.090e-927.57Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A1J4JLH5_9EUKA3.920e-933.81Uncharacterized protein n=1 Tax=Tritrichomonas foe... [more]
A2DN42_TRIVA7.180e-925.14Uncharacterized protein n=1 Tax=Trichomonas vagina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110657contigM-pyrifera_M_contig110657:4..591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue6.7e-14
Seed eggNOG ortholog65071.PYU1_T012910
Hectar predicted targeting categoryother localisation
EggNOG free text desc.function. Source PGD
EggNOG OGs1MDD8@121069,28NVX@1,2QVFY@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size588
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.5389125-CDS-M-pyrifera_M_contig110657:3..5911622815618.5389125-CDS-M-pyrifera_M_contig110657:3..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110657 4..591 -
1692277490.133446-CDS-M-pyrifera_M_contig110657:3..5911692277490.133446-CDS-M-pyrifera_M_contig110657:3..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110657 4..591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110657.2242.1prot_M-pyrifera_M_contig110657.2242.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110657 4..591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110657.2242.1

>prot_M-pyrifera_M_contig110657.2242.1 ID=prot_M-pyrifera_M_contig110657.2242.1|Name=mRNA_M-pyrifera_M_contig110657.2242.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=196bp
NLPVGSREDPKRRFDSAGRLVPYTNAMYLQDLQTDPRQTSNPWLFLYRDF
ERHSAGYRVVVMILKLLLIIPVIVLKDHVIAQVSTTLVLLGIFSILSWWF
APFINDQADLMDLSGRITCLTTALFGFLGSDQVVANGAVPFAIVINIVNA
INLLLLILLLLYSLKAVRSFLKNLSGQFSFSDTARMTEGRPQTIIP
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mRNA from alignment at M-pyrifera_M_contig110657:4..591-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110657.2242.1 ID=mRNA_M-pyrifera_M_contig110657.2242.1|Name=mRNA_M-pyrifera_M_contig110657.2242.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig110657:4..591- (Macrocystis pyrifera P11B4 male)
AACTTGCCAGTTGGATCACGGGAGGACCCGAAACGCCGATTCGACAGTGC AGGACGCCTTGTTCCGTACACCAACGCAATGTACTTGCAAGACCTGCAAA CGGACCCTCGTCAAACTTCGAATCCTTGGTTGTTCTTGTACAGAGACTTT GAGCGGCATTCCGCTGGATATCGCGTGGTGGTGATGATTTTGAAACTGCT TCTCATTATTCCAGTCATCGTGTTGAAGGATCATGTGATCGCACAAGTCT CTACAACTCTTGTTCTCCTCGGCATCTTTTCGATCCTTTCGTGGTGGTTT GCACCATTTATCAATGACCAAGCAGATTTGATGGATCTGTCTGGTCGCAT TACTTGTTTGACAACAGCATTGTTTGGATTCTTGGGCTCTGATCAAGTGG TTGCAAATGGTGCCGTTCCGTTTGCCATTGTGATCAACATCGTCAACGCA ATCAACCTCCTCCTTCTCATCCTCCTTCTTCTCTACTCTCTCAAAGCTGT GCGCTCCTTCCTCAAGAACCTCTCTGGCCAATTCTCCTTCAGTGACACTG CAAGGATGACCGAGGGGCGTCCACAAACGATTATTCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110657:4..591-

>mRNA_M-pyrifera_M_contig110657.2242.1 ID=mRNA_M-pyrifera_M_contig110657.2242.1|Name=mRNA_M-pyrifera_M_contig110657.2242.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1176bp|location=Sequence derived from alignment at M-pyrifera_M_contig110657:4..591- (Macrocystis pyrifera P11B4 male)
AACTTGCCAGTTGGATCACGGGAGGACCCGAAACGCCGATTCGACAGTGC
AGGACGCCTTGTTCCGTACACCAACGCAATGTACTTGCAAGACCTGCAAA
CGGACCCTCGTCAAACTTCGAATCCTTGGTTGTTCTTGTACAGAGACTTT
GAGCGGCATTCCGCTGGATATCGCGTGGTGGTGATGATTTTGAAACTGCT
TCTCATTATTCCAGTCATCGTGTTGAAGGATCATGTGATCGCACAAGTCT
CTACAACTCTTGTTCTCCTCGGCATCTTTTCGATCCTTTCGTGGTGGTTT
GCACCATTTATCAATGACCAAGCAGATTTGATGGATCTGTCTGGTCGCAT
TACTTGTTTGACAACAGCATTGTTTGGATTCTTGGGCTCTGATCAAGTGG
TTGCAAATGGTGCCGTTCCGTTTGCCATTGTGATCAACATCGTCAACGCA
ATCAACCTCCTCCTTCTCATCCTCCTTCTTCTCTACTCTCTCAAAGCTGT
GCGCTCCTTCCTCAAGAACCTCTCTGGCCAATTCTCCTTCAGTGACACTG
CAAGGATGACCGAGGGGCGTCCACAAACGATTATTCCAAACTTGCCAGTT
GGATCACGGGAGGACCCGAAACGCCGATTCGACAGTGCAGGACGCCTTGT
TCCGTACACCAACGCAATGTACTTGCAAGACCTGCAAACGGACCCTCGTC
AAACTTCGAATCCTTGGTTGTTCTTGTACAGAGACTTTGAGCGGCATTCC
GCTGGATATCGCGTGGTGGTGATGATTTTGAAACTGCTTCTCATTATTCC
AGTCATCGTGTTGAAGGATCATGTGATCGCACAAGTCTCTACAACTCTTG
TTCTCCTCGGCATCTTTTCGATCCTTTCGTGGTGGTTTGCACCATTTATC
AATGACCAAGCAGATTTGATGGATCTGTCTGGTCGCATTACTTGTTTGAC
AACAGCATTGTTTGGATTCTTGGGCTCTGATCAAGTGGTTGCAAATGGTG
CCGTTCCGTTTGCCATTGTGATCAACATCGTCAACGCAATCAACCTCCTC
CTTCTCATCCTCCTTCTTCTCTACTCTCTCAAAGCTGTGCGCTCCTTCCT
CAAGAACCTCTCTGGCCAATTCTCCTTCAGTGACACTGCAAGGATGACCG
AGGGGCGTCCACAAACGATTATTCCA
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