mRNA_M-pyrifera_M_contig110647.2239.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110647.2239.1
Unique NamemRNA_M-pyrifera_M_contig110647.2239.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110647.2239.1 vs. uniprot
Match: A0A2B4RIB4_STYPI (Thioredoxin domain-containing protein 17 n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RIB4_STYPI)

HSP 1 Score: 67.0 bits (162), Expect = 1.360e-11
Identity = 35/103 (33.98%), Postives = 50/103 (48.54%), Query Frame = 1 
Query:   88 VVLMLAERNEEGEYWCGDCTDADPVIRPALAALPKDTAVVECSVKRADYKDHPEYGLRTHPVAQLKGVPQLNRFQKGEDGTYTLTGPPLVEDDCKNSETVRKY 396
            +++ +   NE GE WC DC DA+PV+  AL   P D   +   V        P+   RT+P  +LK +P +  +     GT    G     +DCKNSE V K+
Sbjct:   30 IIMFIGAMNENGESWCPDCRDAEPVVEAALKKAPSDIVFILSIVGDKPEWKSPDNEFRTNPEFKLKEIPTIVDY-----GTDKRLGC----EDCKNSEIVDKF 123
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BLAST of mRNA_M-pyrifera_M_contig110647.2239.1 vs. uniprot
Match: G7DXL6_MIXOS (DUF953 domain-containing protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7DXL6_MIXOS)

HSP 1 Score: 55.1 bits (131), Expect = 6.300e-7
Identity = 34/108 (31.48%), Postives = 54/108 (50.00%), Query Frame = 1 
Query:   91 VLMLAERNEEG-EYWCGDCTDADPVIRPALAALPKDTAVVECSVKRADYKDHPEYGLRTHPVAQLKGVPQLNRFQ----KGEDGTYTLTGPPLVEDDCKNSETVRKYL 399
            VL L+ R+    E WCGDCT+A P+++ A    P+   ++  +  + ++KD     LR  P++ L  +P L + +     G D   +  G  L E DCK  E V  +L
Sbjct:   29 VLFLSSRDATTQEMWCGDCTEAWPILQAAFNVGPEKDCLIVWAGSKREWKDEAN-PLRALPLS-LTEIPTLIKLRAVTHSGSDSLASRIGGRLGEHDCKKVEEVIAFL 134
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BLAST of mRNA_M-pyrifera_M_contig110647.2239.1 vs. uniprot
Match: A0A1V9Y411_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y411_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.060e-5
Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 1 
Query:   88 VVLMLAERNEEGEYWCGDCTDADPVIRPALAALPKDTAVVECSVKRADYKDHPEYGLRTHPVAQLKGVPQLNRFQKGEDGTYTLTGPPLVEDDCKNSETVRKYL 399
            +VLM  +R  +GEYWCGDC +AD  I  A A  P +  ++E SV             R H +  +  +P +  + KG   T  L    L+E   K+ E + +YL
Sbjct:   82 IVLMSGKR--DGEYWCGDCRNADKPISEAFAKAPSNARLLEVSVGEPAQWRQASNPFRIHRLFTVSRIPAVLEY-KGNLKTSNL----LLEKFAKDKELL-EYL 177
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110647.2239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2B4RIB4_STYPI1.360e-1133.98Thioredoxin domain-containing protein 17 n=2 Tax=P... [more]
G7DXL6_MIXOS6.300e-731.48DUF953 domain-containing protein n=1 Tax=Mixia osm... [more]
A0A1V9Y411_9STRA3.060e-532.69Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110647contigM-pyrifera_M_contig110647:106..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue4e-13
Seed eggNOG ortholog691883.XP_009495772.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016684,GO:0019725,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748
EggNOG free text desc.protein-disulfide reductase activity
EggNOG OGsKOG3425@1,KOG3425@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.4291472-CDS-M-pyrifera_M_contig110647:105..5161622815618.4291472-CDS-M-pyrifera_M_contig110647:105..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110647 106..516 -
1692277490.0881646-CDS-M-pyrifera_M_contig110647:105..5161692277490.0881646-CDS-M-pyrifera_M_contig110647:105..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110647 106..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110647.2239.1prot_M-pyrifera_M_contig110647.2239.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110647 106..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110647.2239.1

>prot_M-pyrifera_M_contig110647.2239.1 ID=prot_M-pyrifera_M_contig110647.2239.1|Name=mRNA_M-pyrifera_M_contig110647.2239.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MAGSESALVKDPSGFDAAWDAACAGSSTVVVLMLAERNEEGEYWCGDCTD
ADPVIRPALAALPKDTAVVECSVKRADYKDHPEYGLRTHPVAQLKGVPQL
NRFQKGEDGTYTLTGPPLVEDDCKNSETVRKYLGLA*
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mRNA from alignment at M-pyrifera_M_contig110647:106..516-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110647.2239.1 ID=mRNA_M-pyrifera_M_contig110647.2239.1|Name=mRNA_M-pyrifera_M_contig110647.2239.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig110647:106..516- (Macrocystis pyrifera P11B4 male)
ATGGCTGGGAGCGAATCTGCGCTTGTGAAGGATCCTTCTGGGTTTGATGC
TGCTTGGGACGCAGCCTGTGCTGGTAGCAGCACGGTGGTGGTGTTGATGC
TGGCAGAAAGGAACGAAGAAGGCGAGTATTGGTGTGGAGATTGTACCGAC
GCTGATCCAGTGATCCGGCCAGCTCTTGCAGCCTTGCCAAAGGACACAGC
AGTCGTGGAGTGCTCTGTGAAGCGCGCAGACTACAAGGACCATCCAGAAT
ACGGCTTACGCACCCATCCCGTGGCACAGCTCAAAGGAGTTCCCCAATTG
AACAGATTCCAGAAAGGGGAGGACGGAACCTACACTCTCACGGGACCGCC
ACTTGTAGAAGACGACTGCAAGAACTCCGAAACTGTCAGAAAATACCTGG
GGCTTGCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110647:106..516-

>mRNA_M-pyrifera_M_contig110647.2239.1 ID=mRNA_M-pyrifera_M_contig110647.2239.1|Name=mRNA_M-pyrifera_M_contig110647.2239.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig110647:106..516- (Macrocystis pyrifera P11B4 male)
ATGGCTGGGAGCGAATCTGCGCTTGTGAAGGATCCTTCTGGGTTTGATGC
TGCTTGGGACGCAGCCTGTGCTGGTAGCAGCACGGTGGTGGTGTTGATGC
TGGCAGAAAGGAACGAAGAAGGCGAGTATTGGTGTGGAGATTGTACCGAC
GCTGATCCAGTGATCCGGCCAGCTCTTGCAGCCTTGCCAAAGGACACAGC
AGTCGTGGAGTGCTCTGTGAAGCGCGCAGACTACAAGGACCATCCAGAAT
ACGGCTTACGCACCCATCCCGTGGCACAGCTCAAAGGAGTTCCCCAATTG
AACAGATTCCAGAAAGGGGAGGACGGAACCTACACTCTCACGGGACCGCC
ACTTGTAGAAGACGACTGCAAGAACTCCGAAACTGTCAGAAAATACCTGG
GGCTTGCATGAATGGCTGGGAGCGAATCTGCGCTTGTGAAGGATCCTTCT
GGGTTTGATGCTGCTTGGGACGCAGCCTGTGCTGGTAGCAGCACGGTGGT
GGTGTTGATGCTGGCAGAAAGGAACGAAGAAGGCGAGTATTGGTGTGGAG
ATTGTACCGACGCTGATCCAGTGATCCGGCCAGCTCTTGCAGCCTTGCCA
AAGGACACAGCAGTCGTGGAGTGCTCTGTGAAGCGCGCAGACTACAAGGA
CCATCCAGAATACGGCTTACGCACCCATCCCGTGGCACAGCTCAAAGGAG
TTCCCCAATTGAACAGATTCCAGAAAGGGGAGGACGGAACCTACACTCTC
ACGGGACCGCCACTTGTAGAAGACGACTGCAAGAACTCCGAAACTGTCAG
AAAATACCTGGGGCTTGCATGA
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