mRNA_M-pyrifera_M_contig97218.22390.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97218.22390.1
Unique NamemRNA_M-pyrifera_M_contig97218.22390.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig97218.22390.1 vs. uniprot
Match: A0A7S2W437_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W437_9STRA)

HSP 1 Score: 153 bits (386), Expect = 6.400e-45
Identity = 72/108 (66.67%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:    1 LYRDAGCVALLYPGAFNLTTGPKHWELLQRARALDTQAFVLTCSPARNPDASYQAWGHSTISDPWGAVLATTDHEPAVLTATLDMASVAAVRTQIPTATQLRTDVYSM 324
            L R+ G   ++YPGAFNLTTGP HWELLQRARALD QAFVLT SPARNPDASYQAWGHS++  PWG V+A+TDH P ++ A+LD+A+V  VR  IP + Q R+DVYS+
Sbjct:   89 LMRNRGAKIIVYPGAFNLTTGPAHWELLQRARALDNQAFVLTASPARNPDASYQAWGHSSVVSPWGDVVASTDHTPGIVFASLDLANVQEVRAGIPVSNQRRSDVYSL 196
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BLAST of mRNA_M-pyrifera_M_contig97218.22390.1 vs. uniprot
Match: A0A813B3D6_9DINO (Nit2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B3D6_9DINO)

HSP 1 Score: 149 bits (376), Expect = 1.130e-43
Identity = 69/105 (65.71%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:    4 YRDAGCVALLYPGAFNLTTGPKHWELLQRARALDTQAFVLTCSPARNPDASYQAWGHSTISDPWGAVLATTDHEPAVLTATLDMASVAAVRTQIPTATQLRTDVY 318
            YRD+GC  L+YPGAFN TTGP HWELLQR RA+D QAFV+T SP RNPD+ YQAWGHSTI DPWGA++ATT+HE A   A LD+  V  VR QIP   Q R  +Y
Sbjct:   65 YRDSGCSLLVYPGAFNTTTGPLHWELLQRGRAVDNQAFVITASPCRNPDSKYQAWGHSTIVDPWGAIVATTEHEAATFVADLDLGQVETVRKQIPIMKQERLSLY 169
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BLAST of mRNA_M-pyrifera_M_contig97218.22390.1 vs. uniprot
Match: A0A7S1G4D5_9STRA (Hypothetical protein n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4D5_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.200e-40
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    1 LYRDAGCVALLYPGAFNLTTGPKHWELLQRARALDTQAFVLTCSPARNPDASYQAWGHSTISDPWGAVLATTDHEPAVLTATLDMASVAAVRTQIPTATQLRTDVYSM 324
            L R AGC  LLYPGAFN TTGP HWELLQR RA+D Q +V T SPARNP+++YQAWGHS++ +PWG V+ATT+H PAV+ A +D+A   A+R QIP   Q R+D+Y +
Sbjct:  192 LMRKAGCKVLLYPGAFNTTTGPAHWELLQRGRAVDNQVYVATASPARNPESAYQAWGHSSLVNPWGEVVATTEHGPAVVVADVDVARADAIRGQIPVGVQARSDLYEL 299
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BLAST of mRNA_M-pyrifera_M_contig97218.22390.1 vs. uniprot
Match: A0A6H5L491_9PHAE (CN hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L491_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.540e-40
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    7 RDAGCVALLYPGAFNLTTGPKHWELLQRARALDTQAFVLTCSPARNPDASYQAWGHSTISDPWGAVLATTDHEPAVLTATLDMASVAAVRTQIPTATQLRTDVYSM 324
            R AG V L +PGAFN+TTGP HWELLQRARALD Q +V+T SPARNPD+ YQAWGHS+I DPWG ++ATT+HE A+L A +D+  VA VRT IP + Q R D+Y +
Sbjct:  263 RAAGSVLLCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSIVDPWGTIVATTEHEEAMLVAEVDVGRVAEVRTSIPVSLQKRPDLYRL 368
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BLAST of mRNA_M-pyrifera_M_contig97218.22390.1 vs. uniprot
Match: A9UP13_MONBE (CN hydrolase domain-containing protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UP13_MONBE)

HSP 1 Score: 141 bits (355), Expect = 2.850e-39
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:    1 LYRDAGCVALLYPGAFNLTTGPKHWELLQRARALDTQAFVLTCSPARNPDASYQAWGHSTISDPWGAVLATTDHEPAVLTATLDMASVAAVRTQIPTATQLRTDVYSM 324
            LY + GC  LLYPGAFN+TTGP HWELLQR RALD Q FV T SPARN  A YQAWGHS+  DPWG V+ATTD +P ++ A LDM+ V+ VR  IP   Q R D+Y +
Sbjct:  177 LYAEQGCSLLLYPGAFNMTTGPAHWELLQRGRALDNQLFVATASPARNASADYQAWGHSSCVDPWGTVIATTDEQPGLVYADLDMSKVSEVRHNIPIREQKRHDLYRL 284
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BLAST of mRNA_M-pyrifera_M_contig97218.22390.1 vs. uniprot
Match: A0A5A8DES6_CAFRO (CN hydrolase domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DES6_CAFRO)

HSP 1 Score: 140 bits (353), Expect = 8.330e-39
Identity = 65/107 (60.75%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:    1 LYRDAGCVALLYPGAFNLTTGPKHWELLQRARALDTQAFVLTCSPARNPDASYQAWGHSTISDPWGAVLATTDHEPAVLTATLDMASVAAVRTQIPTATQLRTDVYS 321
            L     C  L++PGAFN TTGP HWELL RARALD Q FV  CSPARNPDA YQA+GHST+ DPWGAV+ATT+H+ A++ A +++   A VRT IP + Q+RTD+Y+
Sbjct:  187 LRHKEDCSVLVFPGAFNTTTGPAHWELLLRARALDNQVFVCACSPARNPDAGYQAYGHSTVVDPWGAVVATTEHDEAIVLADMNVPRAAEVRTNIPISKQVRTDLYT 293
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BLAST of mRNA_M-pyrifera_M_contig97218.22390.1 vs. uniprot
Match: A0A2R5GC91_9STRA (Omega-amidase NIT2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GC91_9STRA)

HSP 1 Score: 140 bits (352), Expect = 9.960e-39
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:    1 LYRDAGCVALLYPGAFNLTTGPKHWELLQRARALDTQAFVLTCSPARNPDASYQAWGHSTISDPWGAVLATTDHEPAVLTATLDMASVAAVRTQIPTATQLRTDVYS 321
            L R  GC  +++PGAFN TTGP HWELLQRARA+D Q F  T SPARNPD+ YQAWGHS+I  PWG VLATT+H+  ++ A +D+     VRT IP + Q+RTDVYS
Sbjct:  183 LLRQQGCKLIVWPGAFNTTTGPAHWELLQRARAVDNQLFCATASPARNPDSKYQAWGHSSIISPWGEVLATTEHDADIVYAEIDLGRADEVRTNIPISKQVRTDVYS 289
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BLAST of mRNA_M-pyrifera_M_contig97218.22390.1 vs. uniprot
Match: A0A836C5E9_9CHLO (CN hydrolase domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C5E9_9CHLO)

HSP 1 Score: 140 bits (353), Expect = 1.070e-38
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    1 LYRDAGCVALLYPGAFNLTTGPKHWELLQRARALDTQAFVLTCSPARNPDASYQAWGHSTISDPWGAVLATTDHEPAVLTATLDMASVAAVRTQIPTATQLRTDVYSM 324
            +Y   GC  L+YPGAFN TTGP HWELL +ARA+D Q FVLTCSPARNPD+SYQAWGHST   P+  +LATT+H+PA + A LD A +   RT +P  TQ R D+Y++
Sbjct:  201 IYAQRGCQVLVYPGAFNTTTGPLHWELLAKARAVDNQLFVLTCSPARNPDSSYQAWGHSTAVGPFAEILATTEHQPATVYAELDYAHIGERRTNMPLRTQKRHDLYAL 308
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BLAST of mRNA_M-pyrifera_M_contig97218.22390.1 vs. uniprot
Match: A0A151ZFY7_9MYCE (Nitrilase 2 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZFY7_9MYCE)

HSP 1 Score: 138 bits (347), Expect = 6.270e-38
Identity = 57/108 (52.78%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    1 LYRDAGCVALLYPGAFNLTTGPKHWELLQRARALDTQAFVLTCSPARNPDASYQAWGHSTISDPWGAVLATTDHEPAVLTATLDMASVAAVRTQIPTATQLRTDVYSM 324
            LY+  GC  ++YPGAFN+TTGP HWELLQR+RA+D Q ++ T SP RNPD+SY AWGHST+  PWG VL TTDH+ +++ + +D++ +  +R+ IP   Q R+D+Y +
Sbjct:  189 LYQQEGCKMIVYPGAFNMTTGPAHWELLQRSRAVDNQLYIATVSPCRNPDSSYTAWGHSTVVSPWGEVLTTTDHQESIIYSDIDLSKIDEIRSSIPVLQQKRSDIYQI 296
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BLAST of mRNA_M-pyrifera_M_contig97218.22390.1 vs. uniprot
Match: A0A024UPC5_9STRA (CN hydrolase domain-containing protein n=11 Tax=Aphanomyces TaxID=100860 RepID=A0A024UPC5_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.360e-38
Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    1 LYRDAGCVALLYPGAFNLTTGPKHWELLQRARALDTQAFVLTCSPARNPDASYQAWGHSTISDPWGAVLATTDHEPAVLTATLDMASVAAVRTQIPTATQLRTDVYSM 324
            L ++AG   L+YPGAFNLTTGP HWELLQRARA+D+Q FV   SPAR P++ YQAWGHS++  PWG V+ATT HE A++ A +D+  V  +R  IPTA Q RTD+Y +
Sbjct:  177 LMKEAGAKFLMYPGAFNLTTGPAHWELLQRARAVDSQLFVAATSPARGPESGYQAWGHSSVVSPWGDVVATTSHEEAIVYADIDIEQVDEMRRNIPTAMQKRTDLYKL 284
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97218.22390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2W437_9STRA6.400e-4566.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A813B3D6_9DINO1.130e-4365.71Nit2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S1G4D5_9STRA1.200e-4061.11Hypothetical protein n=2 Tax=Bicosoecida sp. CB-20... [more]
A0A6H5L491_9PHAE1.540e-4064.15CN hydrolase domain-containing protein n=2 Tax=Ect... [more]
A9UP13_MONBE2.850e-3962.04CN hydrolase domain-containing protein n=1 Tax=Mon... [more]
A0A5A8DES6_CAFRO8.330e-3960.75CN hydrolase domain-containing protein n=3 Tax=Caf... [more]
A0A2R5GC91_9STRA9.960e-3960.75Omega-amidase NIT2 n=1 Tax=Hondaea fermentalgiana ... [more]
A0A836C5E9_9CHLO1.070e-3860.19CN hydrolase domain-containing protein n=1 Tax=Eda... [more]
A0A151ZFY7_9MYCE6.270e-3852.78Nitrilase 2 n=1 Tax=Tieghemostelium lacteum TaxID=... [more]
A0A024UPC5_9STRA6.360e-3859.26CN hydrolase domain-containing protein n=11 Tax=Ap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97218contigM-pyrifera_M_contig97218:3..326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue9.4e-34
Seed eggNOG ortholog2880.D7FVW3
Preferred nameNIT2
KEGG rclassRC00010,RC00021,RC00053,RC00315,RC00325,RC00617,RC00959,RC02811
KEGG koko:K00797,ko:K01501,ko:K13101,ko:K13566
KEGG ReactionR00269,R00348,R00540,R01887,R01920,R02869,R03093,R03542,R05591,R07855,R08359
KEGG Pathwayko00250,ko00270,ko00330,ko00380,ko00410,ko00460,ko00480,ko00627,ko00643,ko00910,ko01100,ko01120,map00250,map00270,map00330,map00380,map00410,map00460,map00480,map00627,map00643,map00910,map01100,map01120
KEGG ModuleM00034,M00133
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006107,GO:0006108,GO:0006520,GO:0006528,GO:0006541,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0009064,GO:0009066,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009636,GO:0009987,GO:0012505,GO:0015630,GO:0016192,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032787,GO:0032940,GO:0034641,GO:0034774,GO:0035580,GO:0036230,GO:0042119,GO:0042221,GO:0042581,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046872,GO:0046903,GO:0046914,GO:0050152,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0060205,GO:0070013,GO:0070820,GO:0070887,GO:0071704,GO:0097237,GO:0097708,GO:0098754,GO:0099503,GO:1901564,GO:1901605,GO:1904724,GO:1990748
EggNOG free text desc.hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
EggNOG OGsCOG0388@1,KOG0806@2759
EC2.5.1.16,3.5.1.3,3.5.5.1
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.6504662-CDS-M-pyrifera_M_contig97218:2..3261622816888.6504662-CDS-M-pyrifera_M_contig97218:2..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97218 3..326 +
1692278237.9323306-CDS-M-pyrifera_M_contig97218:2..3261692278237.9323306-CDS-M-pyrifera_M_contig97218:2..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97218 3..326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97218.22390.1prot_M-pyrifera_M_contig97218.22390.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97218 3..326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97218.22390.1

>prot_M-pyrifera_M_contig97218.22390.1 ID=prot_M-pyrifera_M_contig97218.22390.1|Name=mRNA_M-pyrifera_M_contig97218.22390.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
LYRDAGCVALLYPGAFNLTTGPKHWELLQRARALDTQAFVLTCSPARNPD
ASYQAWGHSTISDPWGAVLATTDHEPAVLTATLDMASVAAVRTQIPTATQ
LRTDVYSM
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mRNA from alignment at M-pyrifera_M_contig97218:3..326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97218.22390.1 ID=mRNA_M-pyrifera_M_contig97218.22390.1|Name=mRNA_M-pyrifera_M_contig97218.22390.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig97218:3..326+ (Macrocystis pyrifera P11B4 male)
TTGTATCGCGACGCAGGCTGTGTGGCGCTGCTCTACCCAGGGGCCTTCAA
CCTCACCACGGGCCCCAAGCACTGGGAGCTGCTGCAGCGCGCACGTGCGT
TGGACACGCAGGCCTTTGTGCTCACCTGCTCCCCAGCCCGCAACCCAGAC
GCCAGCTACCAGGCCTGGGGCCACTCCACCATCTCAGACCCGTGGGGCGC
CGTCCTCGCTACCACCGACCACGAGCCAGCAGTCCTCACTGCCACCCTCG
ACATGGCCTCCGTCGCCGCTGTCAGGACGCAAATCCCAACCGCCACGCAG
CTCAGAACAGACGTCTACTCCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97218:3..326+

>mRNA_M-pyrifera_M_contig97218.22390.1 ID=mRNA_M-pyrifera_M_contig97218.22390.1|Name=mRNA_M-pyrifera_M_contig97218.22390.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig97218:3..326+ (Macrocystis pyrifera P11B4 male)
TTGTATCGCGACGCAGGCTGTGTGGCGCTGCTCTACCCAGGGGCCTTCAA
CCTCACCACGGGCCCCAAGCACTGGGAGCTGCTGCAGCGCGCACGTGCGT
TGGACACGCAGGCCTTTGTGCTCACCTGCTCCCCAGCCCGCAACCCAGAC
GCCAGCTACCAGGCCTGGGGCCACTCCACCATCTCAGACCCGTGGGGCGC
CGTCCTCGCTACCACCGACCACGAGCCAGCAGTCCTCACTGCCACCCTCG
ACATGGCCTCCGTCGCCGCTGTCAGGACGCAAATCCCAACCGCCACGCAG
CTCAGAACAGACGTCTACTCCATGTTGTATCGCGACGCAGGCTGTGTGGC
GCTGCTCTACCCAGGGGCCTTCAACCTCACCACGGGCCCCAAGCACTGGG
AGCTGCTGCAGCGCGCACGTGCGTTGGACACGCAGGCCTTTGTGCTCACC
TGCTCCCCAGCCCGCAACCCAGACGCCAGCTACCAGGCCTGGGGCCACTC
CACCATCTCAGACCCGTGGGGCGCCGTCCTCGCTACCACCGACCACGAGC
CAGCAGTCCTCACTGCCACCCTCGACATGGCCTCCGTCGCCGCTGTCAGG
ACGCAAATCCCAACCGCCACGCAGCTCAGAACAGACGTCTACTCCATG
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