mRNA_M-pyrifera_M_contig9713.22374.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9713.22374.1
Unique NamemRNA_M-pyrifera_M_contig9713.22374.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9713.22374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9713contigM-pyrifera_M_contig9713:3477..4131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size655
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9713.22374.1prot_M-pyrifera_M_contig9713.22374.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9713 3636..4013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.7682343-UTR-M-pyrifera_M_contig9713:3476..36351622816887.7682343-UTR-M-pyrifera_M_contig9713:3476..3635Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9713 3477..3635 +
1692278237.3694596-UTR-M-pyrifera_M_contig9713:3476..36351692278237.3694596-UTR-M-pyrifera_M_contig9713:3476..3635Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9713 3477..3635 +
1622816887.7917244-UTR-M-pyrifera_M_contig9713:4013..41311622816887.7917244-UTR-M-pyrifera_M_contig9713:4013..4131Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9713 4014..4131 +
1692278237.3866744-UTR-M-pyrifera_M_contig9713:4013..41311692278237.3866744-UTR-M-pyrifera_M_contig9713:4013..4131Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9713 4014..4131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.7806544-CDS-M-pyrifera_M_contig9713:3635..40131622816887.7806544-CDS-M-pyrifera_M_contig9713:3635..4013Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9713 3636..4013 +
1692278237.3785686-CDS-M-pyrifera_M_contig9713:3635..40131692278237.3785686-CDS-M-pyrifera_M_contig9713:3635..4013Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9713 3636..4013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9713.22374.1

>prot_M-pyrifera_M_contig9713.22374.1 ID=prot_M-pyrifera_M_contig9713.22374.1|Name=mRNA_M-pyrifera_M_contig9713.22374.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MSHFIKHASESLQRWPRRFFPVPSLGTTVPTPTYIYMVYREVQLEPHCTR
KKPLLDGHNMPCSVATLCPLNSACLLVFAKQTATTAGGALNNQTREETTR
TRQSPHSIPTSKQTLPDTLHSSSNR*
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mRNA from alignment at M-pyrifera_M_contig9713:3477..4131+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9713.22374.1 ID=mRNA_M-pyrifera_M_contig9713.22374.1|Name=mRNA_M-pyrifera_M_contig9713.22374.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=655bp|location=Sequence derived from alignment at M-pyrifera_M_contig9713:3477..4131+ (Macrocystis pyrifera P11B4 male)
GTGTCCTGCAAATCAGATTTATTTGCTTGGTTCCACAATGCAACGCAAAA
AGCAGACGCGCACGGTGGAGTCGCTTGAGAGCAAGCAAGTAACCCCAAGA
ATTGTGTATCGAAAGCAATCCCCACCTCTCTGGCCAATCCGCCATAAGAA
TATACGTGTATGTCACATTTCATAAAACATGCCTCCGAGAGCCTACAAAG
ATGGCCAAGGCGTTTTTTTCCAGTACCCTCCTTGGGAACTACGGTACCAA
CACCAACATATATCTATATGGTCTACCGTGAGGTCCAGCTCGAACCACAC
TGCACTCGAAAAAAGCCCCTTTTAGACGGCCACAACATGCCCTGCTCTGT
CGCTACATTGTGTCCGCTTAATTCGGCGTGCCTACTCGTGTTTGCAAAGC
AAACGGCAACCACCGCCGGGGGGGCTCTAAACAACCAAACGCGCGAGGAA
ACAACACGCACGCGACAATCACCACACTCAATTCCCACCTCAAAACAAAC
TCTACCCGACACACTGCACAGCAGCAGCAACCGATAGAGACACGGCAACC
GCACGAGCCCGGCTCTATCTGCTTGGATAATACCTGTCTACACGCTAGGC
GCGCCATCACAGGTTACATAGACGAACGTCCGCCGCAAATTATTTTCAAG
ACAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9713:3477..4131+

>mRNA_M-pyrifera_M_contig9713.22374.1 ID=mRNA_M-pyrifera_M_contig9713.22374.1|Name=mRNA_M-pyrifera_M_contig9713.22374.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig9713:3477..4131+ (Macrocystis pyrifera P11B4 male)
ATGTCACATTTCATAAAACATGCCTCCGAGAGCCTACAAAGATGGCCAAG
GCGTTTTTTTCCAGTACCCTCCTTGGGAACTACGGTACCAACACCAACAT
ATATCTATATGGTCTACCGTGAGGTCCAGCTCGAACCACACTGCACTCGA
AAAAAGCCCCTTTTAGACGGCCACAACATGCCCTGCTCTGTCGCTACATT
GTGTCCGCTTAATTCGGCGTGCCTACTCGTGTTTGCAAAGCAAACGGCAA
CCACCGCCGGGGGGGCTCTAAACAACCAAACGCGCGAGGAAACAACACGC
ACGCGACAATCACCACACTCAATTCCCACCTCAAAACAAACTCTACCCGA
CACACTGCACAGCAGCAGCAACCGATAGATGTCACATTTCATAAAACATG
CCTCCGAGAGCCTACAAAGATGGCCAAGGCGTTTTTTTCCAGTACCCTCC
TTGGGAACTACGGTACCAACACCAACATATATCTATATGGTCTACCGTGA
GGTCCAGCTCGAACCACACTGCACTCGAAAAAAGCCCCTTTTAGACGGCC
ACAACATGCCCTGCTCTGTCGCTACATTGTGTCCGCTTAATTCGGCGTGC
CTACTCGTGTTTGCAAAGCAAACGGCAACCACCGCCGGGGGGGCTCTAAA
CAACCAAACGCGCGAGGAAACAACACGCACGCGACAATCACCACACTCAA
TTCCCACCTCAAAACAAACTCTACCCGACACACTGCACAGCAGCAGCAAC
CGATAG
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